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Sequence, Chains, Asymmetric and Biological Units

Title AVIAN RESPIRATORY COMPLEX II WITH OXALOACETATE AND UBIQUINON
Keywords COMPLEX II, MEMBRANE PROTEIN, HEME PROTEIN, IRON SULFUR PROT CYTOCHROME B, OXIDOREDUCTASE, REDOX ENZYME, RESPIRATORY CHA OXALOACETATE UBIQUINONE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1YQ3     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT  A 614 4736 0
2  Protein   SUCCINATE DEHYDROGENASE IP SUBUNIT  B 242 1930 0
3  Protein    C 140 1071 0
4  Protein    D 102 770 0
5  Ligand   SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT  A 17 0 77
6  Ligand   SUCCINATE DEHYDROGENASE IP SUBUNIT  B 11 0 45
7  Ligand    C 7 0 84
8  Ligand    D 6 0 29
9 Water     834 0 834
total       1973 8507 1069

Proteins
Unit 1 ILE8 SER9 THR10 GLN11 TYR12 PRO13 VAL14 VAL15 ASP16 HIS17 GLU18 PHE19 ASP20 ALA21 VAL22 VAL23 VAL24 GLY25 ALA26 GLY27 GLY28 ALA29 GLY30 LEU31 ARG32 ALA33 ALA34 PHE35 GLY36 LEU37 SER38 GLU39 ALA40 GLY41 PHE42 ASN43 THR44 ALA45 CYS46 VAL47 THR48 LYS49 LEU50 PHE51 PRO52 THR53 ARG54 SER55 HIS56 THR57 VAL58 ALA59 ALA60 GLN61 GLY62 GLY63 ILE64 ASN65 ALA66 ALA67 LEU68 GLY69 ASN70 MET71 GLU72 ASP73 ASP74 ASN75 TRP76 ARG77 TRP78 HIS79 PHE80 TYR81 ASP82 THR83 VAL84 LYS85 GLY86 SER87 ASP88 TRP89 LEU90 GLY91 ASP92 GLN93 ASP94 ALA95 ILE96 HIS97 TYR98 MET99 THR100 GLU101 GLN102 ALA103 PRO104 ALA105 ALA106 VAL107 ILE108 GLU109 LEU110 GLU111 ASN112 TYR113 GLY114 MET115 PRO116 PHE117 SER118 ARG119 THR120 GLU121 GLU122 GLY123 LYS124 ILE125 TYR126 GLN127 ARG128 ALA129 PHE130 GLY131 GLY132 GLN133 SER134 LEU135 GLN136 PHE137 GLY138 LYS139 GLY140 GLY141 GLN142 ALA143 HIS144 ARG145 CYS146 CYS147 CYS148 VAL149 ALA150 ASP151 ARG152 THR153 GLY154 HIS155 SER156 LEU157 LEU158 HIS159 THR160 LEU161 TYR162 GLY163 ARG164 SER165 LEU166 ARG167 TYR168 ASP169 THR170 SER171 TYR172 PHE173 VAL174 GLU175 TYR176 PHE177 ALA178 LEU179 ASP180 LEU181 LEU182 MET183 GLU184 ASN185 GLY186 GLU187 CYS188 ARG189 GLY190 VAL191 ILE192 ALA193 LEU194 CYS195 ILE196 GLU197 ASP198 GLY199 THR200 ILE201 HIS202 ARG203 PHE204 ARG205 ALA206 LYS207 ASN208 THR209 VAL210 ILE211 ALA212 THR213 GLY214 GLY215 TYR216 GLY217 ARG218 THR219 TYR220 PHE221 SER222 CYS223 THR224 SER225 ALA226 HIS227 THR228 SER229 THR230 GLY231 ASP232 GLY233 THR234 ALA235 MET236 VAL237 THR238 ARG239 ALA240 GLY241 LEU242 PRO243 CYS244 GLN245 ASP246 LEU247 GLU248 PHE249 VAL250 GLN251 PHE252 HIS253 PRO254 THR255 GLY256 ILE257 TYR258 GLY259 ALA260 GLY261 CYS262 LEU263 ILE264 THR265 GLU266 GLY267 CYS268 ARG269 GLY270 GLU271 GLY272 GLY273 ILE274 LEU275 ILE276 ASN277 SER278 GLN279 GLY280 GLU281 ARG282 PHE283 MET284 GLU285 ARG286 TYR287 ALA288 PRO289 VAL290 ALA291 LYS292 ASP293 LEU294 ALA295 SER296 ARG297 ASP298 VAL299 VAL300 SER301 ARG302 SER303 MET304 THR305 ILE306 GLU307 ILE308 ARG309 GLU310 GLY311 ARG312 GLY313 CYS314 GLY315 PRO316 GLU317 LYS318 ASP319 HIS320 VAL321 TYR322 LEU323 GLN324 LEU325 HIS326 HIS327 LEU328 PRO329 PRO330 GLN331 GLN332 LEU333 ALA334 THR335 ARG336 LEU337 PRO338 GLY339 ILE340 SER341 GLU342 THR343 ALA344 MET345 ILE346 PHE347 ALA348 GLY349 VAL350 ASP351 VAL352 THR353 LYS354 GLU355 PRO356 ILE357 PRO358 VAL359 LEU360 PRO361 THR362 VAL363 HIS364 TYR365 ASN366 MET367 GLY368 GLY369 ILE370 PRO371 THR372 ASN373 TYR374 LYS375 GLY376 GLN377 VAL378 ILE379 THR380 HIS381 VAL382 ASN383 GLY384 GLU385 ASP386 LYS387 VAL388 VAL389 PRO390 GLY391 LEU392 TYR393 ALA394 CYS395 GLY396 GLU397 ALA398 ALA399 SER400 ALA401 SER402 VAL403 HIS404 GLY405 ALA406 ASN407 ARG408 LEU409 GLY410 ALA411 ASN412 SER413 LEU414 LEU415 ASP416 LEU417 VAL418 VAL419 PHE420 GLY421 ARG422 ALA423 CYS424 ALA425 LEU426 THR427 ILE428 ALA429 GLU430 THR431 CYS432 LYS433 PRO434 GLY435 GLU436 PRO437 VAL438 PRO439 SER440 ILE441 LYS442 PRO443 ASN444 ALA445 GLY446 GLU447 GLU448 SER449 VAL450 ALA451 ASN452 LEU453 ASP454 LYS455 LEU456 ARG457 PHE458 ALA459 ASP460 GLY461 THR462 ILE463 ARG464 THR465 SER466 GLU467 ALA468 ARG469 LEU470 ASN471 MET472 GLN473 LYS474 THR475 MET476 GLN477 SER478 HIS479 ALA480 ALA481 VAL482 PHE483 ARG484 THR485 GLY486 SER487 ILE488 LEU489 GLN490 GLU491 GLY492 CYS493 GLU494 LYS495 LEU496 SER497 GLN498 ILE499 TYR500 ARG501 ASP502 LEU503 ALA504 HIS505 LEU506 LYS507 THR508 PHE509 ASP510 ARG511 GLY512 ILE513 VAL514 TRP515 ASN516 THR517 ASP518 LEU519 VAL520 GLU521 THR522 LEU523 GLU524 LEU525 GLN526 ASN527 LEU528 MET529 LEU530 CYS531 ALA532 LEU533 GLN534 THR535 ILE536 TYR537 GLY538 ALA539 GLU540 ALA541 ARG542 LYS543 GLU544 SER545 ARG546 GLY547 ALA548 HIS549 ALA550 ARG551 GLU552 ASP553 TYR554 LYS555 LEU556 ARG557 ILE558 ASP559 GLU560 PHE561 ASP562 TYR563 SER564 LYS565 PRO566 LEU567 GLN568 GLY569 GLN570 GLN571 LYS572 ARG573 PRO574 PHE575 GLU576 GLU577 HIS578 TRP579 ARG580 LYS581 HIS582 THR583 LEU584 SER585 TYR586 VAL587 ASP588 VAL589 LYS590 SER591 GLY592 LYS593 VAL594 THR595 LEU596 LYS597 TYR598 ARG599 PRO600 VAL601 ILE602 ASP603 ARG604 THR605 LEU606 ASN607 GLU608 GLU609 ASP610 CYS611 SER612 SER613 VAL614 PRO615 PRO616 ALA617 ILE618 ARG619 SER620 TYR621
Unit 2 ALA6 ALA7 THR8 SER9 ARG10 ILE11 LYS12 LYS13 PHE14 SER15 ILE16 TYR17 ARG18 TRP19 ASP20 PRO21 ASP22 LYS23 PRO24 GLY25 ASP26 LYS27 PRO28 ARG29 MET30 GLN31 THR32 TYR33 GLU34 VAL35 ASP36 LEU37 ASN38 LYS39 CYS40 GLY41 PRO42 MET43 VAL44 LEU45 ASP46 ALA47 LEU48 ILE49 LYS50 ILE51 LYS52 ASN53 GLU54 LEU55 ASP56 SER57 THR58 LEU59 THR60 PHE61 ARG62 ARG63 SER64 CYS65 ARG66 GLU67 GLY68 ILE69 CYS70 GLY71 SER72 CYS73 ALA74 MET75 ASN76 ILE77 ALA78 GLY79 GLY80 ASN81 THR82 LEU83 ALA84 CYS85 THR86 LYS87 LYS88 ILE89 ASP90 PRO91 ASP92 LEU93 SER94 LYS95 THR96 THR97 LYS98 ILE99 TYR100 PRO101 LEU102 PRO103 HIS104 MET105 TYR106 VAL107 VAL108 LYS109 ASP110 LEU111 VAL112 PRO113 ASP114 LEU115 SER116 ASN117 PHE118 TYR119 ALA120 GLN121 TYR122 LYS123 SER124 ILE125 GLU126 PRO127 TYR128 LEU129 LYS130 LYS131 LYS132 ASP133 GLU134 SER135 LYS136 GLN137 GLY138 LYS139 GLU140 GLN141 TYR142 LEU143 GLN144 SER145 ILE146 GLU147 ASP148 ARG149 GLN150 LYS151 LEU152 ASP153 GLY154 LEU155 TYR156 GLU157 CYS158 ILE159 LEU160 CYS161 ALA162 CYS163 CYS164 SER165 THR166 SER167 CYS168 PRO169 SER170 TYR171 TRP172 TRP173 ASN174 GLY175 ASP176 LYS177 TYR178 LEU179 GLY180 PRO181 ALA182 VAL183 LEU184 MET185 GLN186 ALA187 TYR188 ARG189 TRP190 MET191 ILE192 ASP193 SER194 ARG195 ASP196 ASP197 TYR198 THR199 GLU200 GLU201 ARG202 LEU203 ALA204 GLN205 LEU206 GLN207 ASP208 PRO209 PHE210 SER211 LEU212 TYR213 ARG214 CYS215 HIS216 THR217 ILE218 MET219 ASN220 CYS221 THR222 ARG223 THR224 CYS225 PRO226 LYS227 GLY228 LEU229 ASN230 PRO231 GLY232 LYS233 ALA234 ILE235 ALA236 GLU237 ILE238 LYS239 LYS240 MET241 MET242 ALA243 THR244 TYR245 LYS246 GLU247
Unit 3 ALA2 THR3 THR4 ALA5 LYS6 GLU7 GLU8 MET9 ALA10 ARG11 PHE12 TRP13 GLU14 LYS15 ASN16 THR17 LYS18 SER19 SER20 ARG21 PRO22 LEU23 SER24 PRO25 HIS26 ILE27 SER28 ILE29 TYR30 LYS31 TRP32 SER33 LEU34 PRO35 MET36 ALA37 MET38 SER39 ILE40 THR41 HIS42 ARG43 GLY44 THR45 GLY46 VAL47 ALA48 LEU49 SER50 LEU51 GLY52 VAL53 SER54 LEU55 PHE56 SER57 LEU58 ALA59 ALA60 LEU61 LEU62 LEU63 PRO64 GLU65 GLN66 PHE67 PRO68 HIS69 TYR70 VAL71 ALA72 VAL73 VAL74 LYS75 SER76 LEU77 SER78 LEU79 SER80 PRO81 ALA82 LEU83 ILE84 TYR85 SER86 ALA87 LYS88 PHE89 ALA90 LEU91 VAL92 PHE93 PRO94 LEU95 SER96 TYR97 HIS98 THR99 TRP100 ASN101 GLY102 ILE103 ARG104 HIS105 LEU106 VAL107 TRP108 ASP109 MET110 GLY111 LYS112 GLY113 PHE114 LYS115 LEU116 SER117 GLN118 VAL119 GLU120 GLN121 SER122 GLY123 VAL124 VAL125 VAL126 LEU127 ILE128 LEU129 THR130 LEU131 LEU132 SER133 SER134 ALA135 GLY136 ILE137 ALA138 ALA139 ILE140 SER141
Unit 4 SER2 SER3 LYS4 ALA5 ALA6 SER7 LEU8 HIS9 TRP10 THR11 SER12 GLU13 ARG14 ALA15 VAL16 SER17 ALA18 LEU19 LEU20 LEU21 GLY22 LEU23 LEU24 PRO25 ALA26 ALA27 TYR28 LEU29 TYR30 PRO31 GLY32 PRO33 ALA34 VAL35 ASP36 TYR37 SER38 LEU39 ALA40 ALA41 ALA42 LEU43 THR44 LEU45 HIS46 GLY47 HIS48 TRP49 GLY50 LEU51 GLY52 GLN53 VAL54 ILE55 THR56 ASP57 TYR58 VAL59 HIS60 GLY61 ASP62 THR63 PRO64 ILE65 LYS66 VAL67 ALA68 ASN69 THR70 GLY71 LEU72 TYR73 VAL74 LEU75 SER76 ALA77 ILE78 THR79 PHE80 THR81 GLY82 LEU83 CYS84 TYR85 PHE86 ASN87 TYR88 TYR89 ASP90 VAL91 GLY92 ILE93 CYS94 LYS95 ALA96 VAL97 ALA98 MET99 LEU100 TRP101 SER102 ILE103

Ligands
Unit 5 FAD1001 TEO1002 UNL1003 UNL1004 UNL1005 UNL1006 UNL1007 UNL1008 UNL1009 UNL1010 UNL1011 UNL1012 UNL1013 UNL1014 UNL1015 UNL1016 UNL1017
Unit 6 FES1002 SF41003 F3S1004 UQ1005 UNL1006 UNL1007 UNL1008 UNL1009 UNL1010 UNL1011 GOL1012
Unit 7 JZR142 HEM143 PEE144 UNL203 UNL211 UNL212 UNL226
Unit 8 PEE104 UNL204 UNL205 UNL209 UNL218 UNL228

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany