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Sequence, Chains, Asymmetric and Biological Units

Title IMMUNE RECEPTOR
Keywords H2-T22 PROTEIN, BETA-2-MICROGLOBULIN, T CELL RECEPTOR DELTA, RECEPTOR GAMMA CHAIN, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1YPZ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   H2-T22 PROTEIN  A 260 2106 0
2  Protein   BETA-2-MICROGLOBULIN  B 102 849 0
3  Protein   H2-T22 PROTEIN  C 260 2106 0
4  Protein   BETA-2-MICROGLOBULIN  D 102 849 0
5  Protein   T CELL RECEPTOR DELTA  E 207 1603 0
6  Protein   T-CELL RECEPTOR GAMMA CHAIN  F 230 1852 0
7  Protein   T CELL RECEPTOR DELTA  G 207 1592 0
8  Protein   T-CELL RECEPTOR GAMMA CHAIN  H 230 1844 0
9  Ligand    I 3 0 42
10  Ligand    J 2 0 30
11  Ligand    K 2 0 30
12  Ligand    L 3 0 42
13  Ligand    M 3 0 39
total       1611 12801 183
Proteins
Unit 1 GLY1 SER2 HIS3 SER4 LEU5 ARG6 TYR7 PHE8 TYR9 THR10 ALA11 VAL12 SER13 ARG14 PRO15 GLY16 LEU17 GLY18 GLU19 PRO20 TRP21 PHE22 ILE23 ILE24 VAL25 GLY26 TYR27 VAL28 ASP29 ASP30 MET31 GLN32 VAL33 LEU34 ARG35 PHE36 SER37 SER38 LYS39 GLU40 GLU41 THR42 PRO43 ARG44 MET45 ALA49 PRO50 TRP51 LEU52 GLU53 GLN54 GLU55 GLU56 ALA57 ASP58 ASN59 TRP60 GLU61 GLN62 GLN63 THR64 ARG65 ILE66 VAL67 THR68 ILE69 GLN70 GLY71 GLN72 LEU73 SER74 GLU75 ARG76 ASN77 LEU78 MET79 THR80 LEU81 VAL82 HIS83 PHE84 TYR85 ASN86 LYS87 SER88 MET89 ASP90 ASP91 SER92 HIS93 THR94 LEU95 GLN96 TRP97 LEU98 GLN99 GLY100 CYS101 ASP102 VAL103 GLU104 PRO105 ASP106 ARG107 HIS108 LEU109 CYS110 LEU111 TRP112 TYR113 ASN114 GLN115 LEU116 ALA117 TYR118 ASP119 SER120 GLU121 ASP122 LEU123 PRO124 THR125 LEU126 ASN127 GLU128 ASN129 PRO130 SER131 SER132 CYS133 THR134 VAL148 GLY149 ASN150 SER151 THR152 VAL153 PRO154 HIS155 ILE156 SER157 GLN158 ASP159 LEU160 LYS161 SER162 HIS163 CYS164 SER165 ASP166 LEU167 LEU168 GLN169 LYS170 TYR171 LEU172 GLU173 LYS174 GLY175 LYS176 GLU177 ARG178 LEU179 LEU180 ARG181 SER182 ASP183 PRO184 PRO185 LYS186 ALA187 HIS188 VAL189 THR190 ARG191 HIS192 PRO193 ARG194 PRO195 GLU196 GLY197 ASP198 VAL199 THR200 LEU201 ARG202 CYS203 TRP204 ALA205 LEU206 GLY207 PHE208 TYR209 PRO210 ALA211 ASP212 ILE213 THR214 LEU215 THR216 TRP217 GLN218 LEU219 ASN220 GLY221 GLU222 GLU223 LEU224 THR225 GLN226 ASP227 MET228 GLU229 LEU230 VAL231 GLU232 THR233 ARG234 PRO235 ALA236 GLY237 ASP238 GLY239 THR240 PHE241 GLN242 LYS243 TRP244 ALA245 ALA246 VAL247 VAL248 VAL249 PRO250 LEU251 GLY252 LYS253 GLU254 GLN255 SER256 TYR257 THR258 CYS259 HIS260 VAL261 TYR262 HIS263 GLU264 GLY265 LEU266 PRO267 GLU268 PRO269 LEU270 ILE271 LEU272 ARG273 TRP274 GLY275 GLY276
Unit 2 ALA-2 ASP-1 PRO0 ILE1 GLN2 ARG3 THR4 PRO5 LYS6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 ALA15 GLU16 ASN17 GLY18 LYS19 SER20 ASN21 PHE22 LEU23 ASN24 CYS25 TYR26 VAL27 SER28 GLY29 PHE30 HIS31 PRO32 SER33 ASP34 ILE35 GLU36 VAL37 ASP38 LEU39 LEU40 LYS41 ASN42 GLY43 GLU44 ARG45 ILE46 GLU47 LYS48 VAL49 GLU50 HIS51 SER52 ASP53 LEU54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 LEU64 LEU65 TYR66 TYR67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 LYS75 ASP76 GLU77 TYR78 ALA79 CYS80 ARG81 VAL82 ASN83 HIS84 VAL85 THR86 LEU87 SER88 GLN89 PRO90 LYS91 ILE92 VAL93 LYS94 TRP95 ASP96 ARG97 ASP98 MET99
Unit 3 GLY1 SER2 HIS3 SER4 LEU5 ARG6 TYR7 PHE8 TYR9 THR10 ALA11 VAL12 SER13 ARG14 PRO15 GLY16 LEU17 GLY18 GLU19 PRO20 TRP21 PHE22 ILE23 ILE24 VAL25 GLY26 TYR27 VAL28 ASP29 ASP30 MET31 GLN32 VAL33 LEU34 ARG35 PHE36 SER37 SER38 LYS39 GLU40 GLU41 THR42 PRO43 ARG44 MET45 ALA49 PRO50 TRP51 LEU52 GLU53 GLN54 GLU55 GLU56 ALA57 ASP58 ASN59 TRP60 GLU61 GLN62 GLN63 THR64 ARG65 ILE66 VAL67 THR68 ILE69 GLN70 GLY71 GLN72 LEU73 SER74 GLU75 ARG76 ASN77 LEU78 MET79 THR80 LEU81 VAL82 HIS83 PHE84 TYR85 ASN86 LYS87 SER88 MET89 ASP90 ASP91 SER92 HIS93 THR94 LEU95 GLN96 TRP97 LEU98 GLN99 GLY100 CYS101 ASP102 VAL103 GLU104 PRO105 ASP106 ARG107 HIS108 LEU109 CYS110 LEU111 TRP112 TYR113 ASN114 GLN115 LEU116 ALA117 TYR118 ASP119 SER120 GLU121 ASP122 LEU123 PRO124 THR125 LEU126 ASN127 GLU128 ASN129 PRO130 SER131 SER132 CYS133 THR134 VAL148 GLY149 ASN150 SER151 THR152 VAL153 PRO154 HIS155 ILE156 SER157 GLN158 ASP159 LEU160 LYS161 SER162 HIS163 CYS164 SER165 ASP166 LEU167 LEU168 GLN169 LYS170 TYR171 LEU172 GLU173 LYS174 GLY175 LYS176 GLU177 ARG178 LEU179 LEU180 ARG181 SER182 ASP183 PRO184 PRO185 LYS186 ALA187 HIS188 VAL189 THR190 ARG191 HIS192 PRO193 ARG194 PRO195 GLU196 GLY197 ASP198 VAL199 THR200 LEU201 ARG202 CYS203 TRP204 ALA205 LEU206 GLY207 PHE208 TYR209 PRO210 ALA211 ASP212 ILE213 THR214 LEU215 THR216 TRP217 GLN218 LEU219 ASN220 GLY221 GLU222 GLU223 LEU224 THR225 GLN226 ASP227 MET228 GLU229 LEU230 VAL231 GLU232 THR233 ARG234 PRO235 ALA236 GLY237 ASP238 GLY239 THR240 PHE241 GLN242 LYS243 TRP244 ALA245 ALA246 VAL247 VAL248 VAL249 PRO250 LEU251 GLY252 LYS253 GLU254 GLN255 SER256 TYR257 THR258 CYS259 HIS260 VAL261 TYR262 HIS263 GLU264 GLY265 LEU266 PRO267 GLU268 PRO269 LEU270 ILE271 LEU272 ARG273 TRP274 GLY275 GLY276
Unit 4 ALA-2 ASP-1 PRO0 ILE1 GLN2 ARG3 THR4 PRO5 LYS6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 ALA15 GLU16 ASN17 GLY18 LYS19 SER20 ASN21 PHE22 LEU23 ASN24 CYS25 TYR26 VAL27 SER28 GLY29 PHE30 HIS31 PRO32 SER33 ASP34 ILE35 GLU36 VAL37 ASP38 LEU39 LEU40 LYS41 ASN42 GLY43 GLU44 ARG45 ILE46 GLU47 LYS48 VAL49 GLU50 HIS51 SER52 ASP53 LEU54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 LEU64 LEU65 TYR66 TYR67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 LYS75 ASP76 GLU77 TYR78 ALA79 CYS80 ARG81 VAL82 ASN83 HIS84 VAL85 THR86 LEU87 SER88 GLN89 PRO90 LYS91 ILE92 VAL93 LYS94 TRP95 ASP96 ARG97 ASP98 MET99
Unit 5 GLY1 ASP2 GLN3 VAL4 GLU5 GLN6 SER7 PRO8 SER9 ALA10 LEU11 SER12 LEU13 HIS14 GLU15 GLY16 THR17 ASP18 SER19 ALA20 LEU21 ARG22 CYS23 ASN24 PHE25 THR26 THR27 THR28 MET29 ARG30 SER31 VAL32 GLN33 TRP34 PHE35 ARG36 GLN37 ASN38 SER39 ARG40 GLY41 SER42 LEU43 ILE44 SER45 LEU46 PHE47 TYR48 LEU49 ALA50 SER51 GLY52 THR53 LYS54 GLU55 ASN56 GLY57 ARG58 LEU59 LYS60 SER61 ALA62 PHE63 ASP64 SER65 LYS66 GLU67 ARG68 ARG69 TYR70 SER71 THR72 LEU73 HIS74 ILE75 ARG76 ASP77 ALA78 GLN79 LEU80 GLU81 ASP82 SER83 GLY84 THR85 TYR86 PHE87 CYS88 ALA89 ALA90 ASP91 THR92 TRP93 HIS94 ILE95 SER96 GLU97 GLY98 TYR99 GLU100 LEU101 GLY102 THR103 ASP104 LYS105 LEU106 VAL107 PHE108 GLY109 GLN110 GLY111 THR112 GLN113 VAL114 THR115 VAL116 GLU117 PRO118 LYS119 SER120 GLN121 PRO122 PRO123 ALA124 LYS125 PRO126 SER127 VAL128 PHE129 ILE130 MET131 LYS132 ASN133 GLY134 THR135 ASN136 VAL137 ALA138 CYS139 LEU140 VAL141 LYS142 ASP143 PHE144 TYR145 PRO146 LYS147 GLU148 VAL149 THR150 ILE151 SER152 LEU153 ARG154 SER155 SER156 LYS157 LYS158 ILE159 VAL160 GLU161 PHE162 ASP163 PRO164 ALA165 ILE166 VAL167 ILE168 SER169 PRO170 SER171 GLY172 LYS173 TYR174 SER175 ALA176 VAL177 LYS178 LEU179 GLY180 GLN181 TYR182 GLY183 ASP184 SER185 ASN186 SER187 VAL188 THR189 CYS190 SER191 VAL192 GLN193 HIS194 ASN195 SER196 GLU197 THR198 VAL199 HIS200 SER201 THR202 ASP203 PHE204 GLU205 ALA206 ALA207
Unit 6 HIS1 GLY2 LYS3 LEU4 GLU5 GLN6 PRO7 GLU8 ILE9 SER10 ILE11 SER12 ARG13 PRO14 ARG15 ASP16 GLU17 THR18 ALA19 GLN20 ILE21 SER22 CYS23 LYS24 VAL25 PHE26 ILE27 GLU28 SER29 PHE30 ARG31 SER32 VAL33 THR34 ILE35 HIS36 TRP37 TYR38 ARG39 GLN40 LYS41 PRO42 ASN43 GLN44 GLY45 LEU46 GLU47 PHE48 LEU49 LEU50 TYR51 VAL52 LEU53 ALA54 THR55 PRO56 THR57 HIS58 ILE59 PHE60 LEU61 ASP62 LYS63 GLU64 TYR65 LYS66 LYS67 MET68 GLU69 ALA70 SER71 LYS72 ASN73 PRO74 SER75 ALA76 SER77 THR78 SER79 ILE80 LEU81 THR82 ILE83 TYR84 SER85 LEU86 GLU87 GLU88 GLU89 ASP90 GLU91 ALA92 ILE93 TYR94 TYR95 CYS96 SER97 TYR98 GLY99 GLU100 GLY101 SER102 SER103 GLY104 PHE105 HIS106 LYS107 VAL108 PHE109 ALA110 GLU111 GLY112 THR113 LYS114 LEU115 ILE116 VAL117 ILE118 PRO119 SER120 ASP121 LYS122 ARG123 LEU124 ASP125 ALA126 ASP127 ILE128 SER129 PRO130 LYS131 PRO132 THR133 ILE134 PHE135 LEU136 PRO137 SER138 VAL139 ALA140 GLU141 THR142 ASN143 LEU144 HIS145 LYS146 THR147 GLY148 THR149 TYR150 LEU151 CYS152 LEU153 LEU154 GLU155 ALA156 PHE157 PHE158 PRO159 ASP160 VAL161 ILE162 ARG163 VAL164 TYR165 TRP166 LYS167 GLU168 LYS169 ASP170 GLY171 ASN172 THR173 ILE174 LEU175 ASP176 SER177 GLN178 GLU179 GLY180 ASP181 THR182 LEU183 LYS184 THR185 ASN186 ASP187 THR188 TYR189 MET190 LYS191 PHE192 SER193 TRP194 LEU195 THR196 VAL197 PRO198 GLU199 ARG200 ALA201 MET202 GLY203 LYS204 GLU205 HIS206 ARG207 CYS208 ILE209 VAL210 LYS211 HIS212 GLU213 ASN214 ASN215 LYS216 GLY217 GLY218 ALA219 ASP220 GLN221 ALA222 ILE223 PHE224 PHE225 PRO226 SER227 ILE228 LYS229 LYS230
Unit 7 GLY1 ASP2 GLN3 VAL4 GLU5 GLN6 SER7 PRO8 SER9 ALA10 LEU11 SER12 LEU13 HIS14 GLU15 GLY16 THR17 ASP18 SER19 ALA20 LEU21 ARG22 CYS23 ASN24 PHE25 THR26 THR27 THR28 MET29 ARG30 SER31 VAL32 GLN33 TRP34 PHE35 ARG36 GLN37 ASN38 SER39 ARG40 GLY41 SER42 LEU43 ILE44 SER45 LEU46 PHE47 TYR48 LEU49 ALA50 SER51 GLY52 THR53 LYS54 GLU55 ASN56 GLY57 ARG58 LEU59 LYS60 SER61 ALA62 PHE63 ASP64 SER65 LYS66 GLU67 ARG68 ARG69 TYR70 SER71 THR72 LEU73 HIS74 ILE75 ARG76 ASP77 ALA78 GLN79 LEU80 GLU81 ASP82 SER83 GLY84 THR85 TYR86 PHE87 CYS88 ALA89 ALA90 ASP91 THR92 TRP93 HIS94 ILE95 SER96 GLU97 GLY98 TYR99 GLU100 LEU101 GLY102 THR103 ASP104 LYS105 LEU106 VAL107 PHE108 GLY109 GLN110 GLY111 THR112 GLN113 VAL114 THR115 VAL116 GLU117 PRO118 LYS119 SER120 GLN121 PRO122 PRO123 ALA124 LYS125 PRO126 SER127 VAL128 PHE129 ILE130 MET131 LYS132 ASN133 GLY134 THR135 ASN136 VAL137 ALA138 CYS139 LEU140 VAL141 LYS142 ASP143 PHE144 TYR145 PRO146 LYS147 GLU148 VAL149 THR150 ILE151 SER152 LEU153 ARG154 SER155 SER156 LYS157 LYS158 ILE159 VAL160 GLU161 PHE162 ASP163 PRO164 ALA165 ILE166 VAL167 ILE168 SER169 PRO170 SER171 GLY172 LYS173 TYR174 SER175 ALA176 VAL177 LYS178 LEU179 GLY180 GLN181 TYR182 GLY183 ASP184 SER185 ASN186 SER187 VAL188 THR189 CYS190 SER191 VAL192 GLN193 HIS194 ASN195 SER196 GLU197 THR198 VAL199 HIS200 SER201 THR202 ASP203 PHE204 GLU205 ALA206 ALA207
Unit 8 HIS1 GLY2 LYS3 LEU4 GLU5 GLN6 PRO7 GLU8 ILE9 SER10 ILE11 SER12 ARG13 PRO14 ARG15 ASP16 GLU17 THR18 ALA19 GLN20 ILE21 SER22 CYS23 LYS24 VAL25 PHE26 ILE27 GLU28 SER29 PHE30 ARG31 SER32 VAL33 THR34 ILE35 HIS36 TRP37 TYR38 ARG39 GLN40 LYS41 PRO42 ASN43 GLN44 GLY45 LEU46 GLU47 PHE48 LEU49 LEU50 TYR51 VAL52 LEU53 ALA54 THR55 PRO56 THR57 HIS58 ILE59 PHE60 LEU61 ASP62 LYS63 GLU64 TYR65 LYS66 LYS67 MET68 GLU69 ALA70 SER71 LYS72 ASN73 PRO74 SER75 ALA76 SER77 THR78 SER79 ILE80 LEU81 THR82 ILE83 TYR84 SER85 LEU86 GLU87 GLU88 GLU89 ASP90 GLU91 ALA92 ILE93 TYR94 TYR95 CYS96 SER97 TYR98 GLY99 GLU100 GLY101 SER102 SER103 GLY104 PHE105 HIS106 LYS107 VAL108 PHE109 ALA110 GLU111 GLY112 THR113 LYS114 LEU115 ILE116 VAL117 ILE118 PRO119 SER120 ASP121 LYS122 ARG123 LEU124 ASP125 ALA126 ASP127 ILE128 SER129 PRO130 LYS131 PRO132 THR133 ILE134 PHE135 LEU136 PRO137 SER138 VAL139 ALA140 GLU141 THR142 ASN143 LEU144 HIS145 LYS146 THR147 GLY148 THR149 TYR150 LEU151 CYS152 LEU153 LEU154 GLU155 ALA156 PHE157 PHE158 PRO159 ASP160 VAL161 ILE162 ARG163 VAL164 TYR165 TRP166 LYS167 GLU168 LYS169 ASP170 GLY171 ASN172 THR173 ILE174 LEU175 ASP176 SER177 GLN178 GLU179 GLY180 ASP181 THR182 LEU183 LYS184 THR185 ASN186 ASP187 THR188 TYR189 MET190 LYS191 PHE192 SER193 TRP194 LEU195 THR196 VAL197 PRO198 GLU199 ARG200 ALA201 MET202 GLY203 LYS204 GLU205 HIS206 ARG207 CYS208 ILE209 VAL210 LYS211 HIS212 GLU213 ASN214 ASN215 LYS216 GLY217 GLY218 ALA219 ASP220 GLN221 ALA222 ILE223 PHE224 PHE225 PRO226 SER227 ILE228 LYS229 LYS230
Ligands
Unit 9 NAG1 NAG2 MAN3
Unit 10 NAG1 NAG2
Unit 11 NAG1 NAG2
Unit 12 NAG1 NAG2 MAN3
Unit 13 NAG1 NAG2 FUC3
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany