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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF POTATO TUBER ADP-GLUCOSE PYROPHOSPHORYLASE IN COMPLEX WITH ATP
Keywords ADP-GLUCOSE PYROPHOSPHORYLASE, ADP-GLUCOSE SYNTHASE, AGPASE B, ALPHA-D-GLUCOSE-1-PHOSPHATE ADENYL TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1YP3     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE SMALL SUBUNIT  A 433 3369 0
2  Protein   GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE SMALL SUBUNIT  B 432 3340 0
3  Protein   GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE SMALL SUBUNIT  C 435 3380 0
4  Protein   GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE SMALL SUBUNIT  D 425 3295 0
5  Ligand   GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE SMALL SUBUNIT  A 5 0 51
6  Ligand   GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE SMALL SUBUNIT  B 3 0 15
7  Ligand   GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE SMALL SUBUNIT  C 5 0 51
8  Ligand   GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE SMALL SUBUNIT  D 2 0 10
9 Water     254 0 254
total       1994 13384 381
Proteins
Unit 1 GLN10 THR11 CYS12 LEU13 ASP14 PRO15 ASP16 ALA17 SER18 ARG19 SER20 VAL21 LEU22 GLY23 ILE24 ILE25 LEU26 GLY27 GLY28 GLY29 ALA30 GLY31 THR32 ARG33 LEU34 TYR35 PRO36 LEU37 THR38 LYS39 LYS40 ARG41 ALA42 LYS43 PRO44 ALA45 VAL46 PRO47 LEU48 GLY49 ALA50 ASN51 TYR52 ARG53 LEU54 ILE55 ASP56 ILE57 PRO58 VAL59 SER60 ASN61 CYS62 LEU63 ASN64 SER65 ASN66 ILE67 SER68 LYS69 ILE70 TYR71 VAL72 LEU73 THR74 GLN75 PHE76 ASN77 SER78 ALA79 SER80 LEU81 ASN82 ARG83 HIS84 LEU85 SER86 ARG87 ALA88 TYR89 GLU99 GLY100 PHE101 VAL102 GLU103 VAL104 LEU105 ALA106 ALA107 GLN108 GLN109 SER110 PRO111 GLU112 ASN113 PRO114 ASP115 TRP116 PHE117 GLN118 GLY119 THR120 ALA121 ASP122 ALA123 VAL124 ARG125 GLN126 TYR127 LEU128 TRP129 LEU130 PHE131 GLU132 GLU133 HIS134 THR135 VAL136 LEU137 GLU138 TYR139 LEU140 ILE141 LEU142 ALA143 GLY144 ASP145 HIS146 LEU147 TYR148 ARG149 MET150 ASP151 TYR152 GLU153 LYS154 PHE155 ILE156 GLN157 ALA158 HIS159 ARG160 GLU161 THR162 ASP163 ALA164 ASP165 ILE166 THR167 VAL168 ALA169 ALA170 LEU171 PRO172 MET173 ASP174 GLU175 LYS176 ARG177 ALA178 THR179 ALA180 PHE181 GLY182 LEU183 MET184 LYS185 ILE186 ASP187 GLU188 GLU189 GLY190 ARG191 ILE192 ILE193 GLU194 PHE195 ALA196 GLU197 LYS198 PRO199 GLN200 GLY201 GLU202 GLN203 LEU204 GLN205 ALA206 MET207 LYS208 VAL209 ASP210 THR211 THR212 ILE213 LEU214 GLY215 LEU216 ASP217 ASP218 LYS219 ARG220 ALA221 LYS222 GLU223 MET224 PRO225 PHE226 ILE227 ALA228 SER229 MET230 GLY231 ILE232 TYR233 VAL234 ILE235 SER236 LYS237 ASP238 VAL239 MET240 LEU241 ASN242 LEU243 LEU244 ARG245 ASP246 LYS247 PHE248 PRO249 GLY250 ALA251 ASN252 ASP253 PHE254 GLY255 SER256 GLU257 VAL258 ILE259 PRO260 GLY261 ALA262 THR263 SER264 LEU265 GLY266 MET267 ARG268 VAL269 GLN270 ALA271 TYR272 LEU273 TYR274 ASP275 GLY276 TYR277 TRP278 GLU279 ASP280 ILE281 GLY282 THR283 ILE284 GLU285 ALA286 PHE287 TYR288 ASN289 ALA290 ASN291 LEU292 GLY293 ILE294 THR295 LYS296 LYS297 PRO298 VAL299 PRO300 ASP301 PHE302 SER303 PHE304 TYR305 ASP306 ARG307 SER308 ALA309 PRO310 ILE311 TYR312 THR313 GLN314 PRO315 ARG316 TYR317 LEU318 PRO319 PRO320 SER321 LYS322 MET323 LEU324 ASP325 ALA326 ASP327 VAL328 THR329 ASP330 SER331 VAL332 ILE333 GLY334 GLU335 GLY336 CYS337 VAL338 ILE339 LYS340 ASN341 CYS342 LYS343 ILE344 HIS345 HIS346 SER347 VAL348 VAL349 GLY350 LEU351 ARG352 SER353 CYS354 ILE355 SER356 GLU357 GLY358 ALA359 ILE360 ILE361 GLU362 ASP363 SER364 LEU365 LEU366 MET367 GLY368 ALA369 ASP370 TYR371 TYR372 GLU373 THR374 ASP375 ALA376 ASP377 ARG378 LYS379 LEU380 LEU381 ALA382 ALA383 LYS384 GLY385 SER386 VAL387 PRO388 ILE389 GLY390 ILE391 GLY392 LYS393 ASN394 CYS395 HIS396 ILE397 LYS398 ARG399 ALA400 ILE401 ILE402 ASP403 LYS404 ASN405 ALA406 ARG407 ILE408 GLY409 ASP410 ASN411 VAL412 LYS413 ILE414 ILE415 ASN416 LYS417 ASP418 ASN419 VAL420 GLN421 GLU422 ALA423 ALA424 ARG425 GLU426 THR427 ASP428 GLY429 TYR430 PHE431 ILE432 LYS433 SER434 GLY435 ILE436 VAL437 THR438 VAL439 ILE440 LYS441 ASP442 ALA443 LEU444 ILE445 PRO446 SER447 GLY448 ILE449 ILE450 ILE451
Unit 2 THR11 CYS12 LEU13 ASP14 PRO15 ASP16 ALA17 SER18 ARG19 SER20 VAL21 LEU22 GLY23 ILE24 ILE25 LEU26 GLY27 GLY28 GLY29 ALA30 GLY31 THR32 ARG33 LEU34 TYR35 PRO36 LEU37 THR38 LYS39 LYS40 ARG41 ALA42 LYS43 PRO44 ALA45 VAL46 PRO47 LEU48 GLY49 ALA50 ASN51 TYR52 ARG53 LEU54 ILE55 ASP56 ILE57 PRO58 VAL59 SER60 ASN61 CYS62 LEU63 ASN64 SER65 ASN66 ILE67 SER68 LYS69 ILE70 TYR71 VAL72 LEU73 THR74 GLN75 PHE76 ASN77 SER78 ALA79 SER80 LEU81 ASN82 ARG83 HIS84 LEU85 SER86 ARG87 ALA88 TYR89 ALA90 SER91 ASN92 ASN98 GLU99 GLY100 PHE101 VAL102 GLU103 VAL104 LEU105 ALA106 ALA107 GLN108 GLN109 SER110 PRO111 GLU112 ASN113 GLN118 GLY119 THR120 ALA121 ASP122 ALA123 VAL124 ARG125 GLN126 TYR127 LEU128 TRP129 LEU130 PHE131 GLU132 GLU133 HIS134 THR135 VAL136 LEU137 GLU138 TYR139 LEU140 ILE141 LEU142 ALA143 GLY144 ASP145 HIS146 LEU147 TYR148 ARG149 MET150 ASP151 TYR152 GLU153 LYS154 PHE155 ILE156 GLN157 ALA158 HIS159 ARG160 GLU161 THR162 ASP163 ALA164 ASP165 ILE166 THR167 VAL168 ALA169 ALA170 LEU171 PRO172 MET173 ASP174 GLU175 LYS176 ARG177 ALA178 THR179 ALA180 PHE181 GLY182 LEU183 MET184 LYS185 ILE186 ASP187 GLU188 GLU189 GLY190 ARG191 ILE192 ILE193 GLU194 PHE195 ALA196 GLU197 LYS198 PRO199 GLN200 GLY201 GLU202 GLN203 LEU204 GLN205 ALA206 MET207 LYS208 VAL209 ASP210 THR211 THR212 ILE213 LEU214 GLY215 LEU216 ASP217 ASP218 LYS219 ARG220 ALA221 LYS222 GLU223 MET224 PRO225 PHE226 ILE227 ALA228 SER229 MET230 GLY231 ILE232 TYR233 VAL234 ILE235 SER236 LYS237 ASP238 VAL239 MET240 LEU241 ASN242 LEU243 LEU244 ARG245 ASP246 LYS247 PHE248 PRO249 GLY250 ALA251 ASN252 ASP253 PHE254 GLY255 SER256 GLU257 VAL258 ILE259 PRO260 GLY261 ALA262 THR263 SER264 LEU265 GLY266 MET267 ARG268 VAL269 GLN270 ALA271 TYR272 LEU273 TYR274 ASP275 GLY276 TYR277 TRP278 GLU279 ASP280 ILE281 GLY282 THR283 ILE284 GLU285 ALA286 PHE287 TYR288 ASN289 ALA290 ASN291 LEU292 GLY293 ILE294 THR295 LYS296 LYS297 PRO298 VAL299 PRO300 ASP301 PHE302 SER303 PHE304 TYR305 ASP306 ARG307 SER308 ALA309 PRO310 ILE311 TYR312 THR313 GLN314 PRO315 ARG316 TYR317 LEU318 PRO319 PRO320 SER321 LYS322 MET323 LEU324 ASP325 ALA326 ASP327 VAL328 THR329 ASP330 SER331 VAL332 ILE333 GLY334 GLU335 GLY336 CYS337 VAL338 ILE339 LYS340 ASN341 CYS342 LYS343 ILE344 HIS345 HIS346 SER347 VAL348 VAL349 GLY350 LEU351 ARG352 SER353 CYS354 ILE355 SER356 GLU357 GLY358 ALA359 ILE360 ILE361 GLU362 ASP363 SER364 LEU365 LEU366 MET367 GLY368 ALA369 ASP370 TYR371 TYR372 GLU373 THR374 ASP375 ALA376 ASP377 ARG378 LYS379 LEU380 LEU381 ALA382 ALA383 LYS384 GLY385 SER386 VAL387 PRO388 ILE389 GLY390 ILE391 GLY392 LYS393 ASN394 CYS395 HIS396 ILE397 LYS398 ARG399 ALA400 ILE401 ILE402 ASP403 LYS404 ASN405 ALA406 ARG407 ILE408 GLY409 ASP410 ASN411 VAL412 LYS413 ILE414 ILE415 ASN416 LYS417 ASP418 ASN419 VAL420 GLN421 GLU422 ALA423 ALA424 ARG425 GLU426 THR427 ASP428 GLY429 TYR430 PHE431 ILE432 LYS433 SER434 GLY435 ILE436 VAL437 THR438 VAL439 ILE440 LYS441 ASP442 ALA443 LEU444 ILE445 PRO446 SER447 GLY448 ILE449 ILE450 ILE451
Unit 3 GLN10 THR11 CYS12 LEU13 ASP14 PRO15 ASP16 ALA17 SER18 ARG19 SER20 VAL21 LEU22 GLY23 ILE24 ILE25 LEU26 GLY27 GLY28 GLY29 ALA30 GLY31 THR32 ARG33 LEU34 TYR35 PRO36 LEU37 THR38 LYS39 LYS40 ARG41 ALA42 LYS43 PRO44 ALA45 VAL46 PRO47 LEU48 GLY49 ALA50 ASN51 TYR52 ARG53 LEU54 ILE55 ASP56 ILE57 PRO58 VAL59 SER60 ASN61 CYS62 LEU63 ASN64 SER65 ASN66 ILE67 SER68 LYS69 ILE70 TYR71 VAL72 LEU73 THR74 GLN75 PHE76 ASN77 SER78 ALA79 SER80 LEU81 ASN82 ARG83 HIS84 LEU85 SER86 ARG87 ALA88 TYR89 ALA90 SER91 GLU99 GLY100 PHE101 VAL102 GLU103 VAL104 LEU105 ALA106 ALA107 GLN108 GLN109 SER110 PRO111 GLU112 ASN113 PRO114 ASP115 TRP116 PHE117 GLN118 GLY119 THR120 ALA121 ASP122 ALA123 VAL124 ARG125 GLN126 TYR127 LEU128 TRP129 LEU130 PHE131 GLU132 GLU133 HIS134 THR135 VAL136 LEU137 GLU138 TYR139 LEU140 ILE141 LEU142 ALA143 GLY144 ASP145 HIS146 LEU147 TYR148 ARG149 MET150 ASP151 TYR152 GLU153 LYS154 PHE155 ILE156 GLN157 ALA158 HIS159 ARG160 GLU161 THR162 ASP163 ALA164 ASP165 ILE166 THR167 VAL168 ALA169 ALA170 LEU171 PRO172 MET173 ASP174 GLU175 LYS176 ARG177 ALA178 THR179 ALA180 PHE181 GLY182 LEU183 MET184 LYS185 ILE186 ASP187 GLU188 GLU189 GLY190 ARG191 ILE192 ILE193 GLU194 PHE195 ALA196 GLU197 LYS198 PRO199 GLN200 GLY201 GLU202 GLN203 LEU204 GLN205 ALA206 MET207 LYS208 VAL209 ASP210 THR211 THR212 ILE213 LEU214 GLY215 LEU216 ASP217 ASP218 LYS219 ARG220 ALA221 LYS222 GLU223 MET224 PRO225 PHE226 ILE227 ALA228 SER229 MET230 GLY231 ILE232 TYR233 VAL234 ILE235 SER236 LYS237 ASP238 VAL239 MET240 LEU241 ASN242 LEU243 LEU244 ARG245 ASP246 LYS247 PHE248 PRO249 GLY250 ALA251 ASN252 ASP253 PHE254 GLY255 SER256 GLU257 VAL258 ILE259 PRO260 GLY261 ALA262 THR263 SER264 LEU265 GLY266 MET267 ARG268 VAL269 GLN270 ALA271 TYR272 LEU273 TYR274 ASP275 GLY276 TYR277 TRP278 GLU279 ASP280 ILE281 GLY282 THR283 ILE284 GLU285 ALA286 PHE287 TYR288 ASN289 ALA290 ASN291 LEU292 GLY293 ILE294 THR295 LYS296 LYS297 PRO298 VAL299 PRO300 ASP301 PHE302 SER303 PHE304 TYR305 ASP306 ARG307 SER308 ALA309 PRO310 ILE311 TYR312 THR313 GLN314 PRO315 ARG316 TYR317 LEU318 PRO319 PRO320 SER321 LYS322 MET323 LEU324 ASP325 ALA326 ASP327 VAL328 THR329 ASP330 SER331 VAL332 ILE333 GLY334 GLU335 GLY336 CYS337 VAL338 ILE339 LYS340 ASN341 CYS342 LYS343 ILE344 HIS345 HIS346 SER347 VAL348 VAL349 GLY350 LEU351 ARG352 SER353 CYS354 ILE355 SER356 GLU357 GLY358 ALA359 ILE360 ILE361 GLU362 ASP363 SER364 LEU365 LEU366 MET367 GLY368 ALA369 ASP370 TYR371 TYR372 GLU373 THR374 ASP375 ALA376 ASP377 ARG378 LYS379 LEU380 LEU381 ALA382 ALA383 LYS384 GLY385 SER386 VAL387 PRO388 ILE389 GLY390 ILE391 GLY392 LYS393 ASN394 CYS395 HIS396 ILE397 LYS398 ARG399 ALA400 ILE401 ILE402 ASP403 LYS404 ASN405 ALA406 ARG407 ILE408 GLY409 ASP410 ASN411 VAL412 LYS413 ILE414 ILE415 ASN416 LYS417 ASP418 ASN419 VAL420 GLN421 GLU422 ALA423 ALA424 ARG425 GLU426 THR427 ASP428 GLY429 TYR430 PHE431 ILE432 LYS433 SER434 GLY435 ILE436 VAL437 THR438 VAL439 ILE440 LYS441 ASP442 ALA443 LEU444 ILE445 PRO446 SER447 GLY448 ILE449 ILE450 ILE451
Unit 4 LEU13 ASP14 PRO15 ASP16 ALA17 SER18 ARG19 SER20 VAL21 LEU22 GLY23 ILE24 ILE25 LEU26 GLY27 GLY28 GLY29 ALA30 GLY31 THR32 ARG33 LEU34 TYR35 PRO36 LEU37 THR38 LYS39 LYS40 ARG41 ALA42 LYS43 PRO44 ALA45 VAL46 PRO47 LEU48 GLY49 ALA50 ASN51 TYR52 ARG53 LEU54 ILE55 ASP56 ILE57 PRO58 VAL59 SER60 ASN61 CYS62 LEU63 ASN64 SER65 ASN66 ILE67 SER68 LYS69 ILE70 TYR71 VAL72 LEU73 THR74 GLN75 PHE76 ASN77 SER78 ALA79 SER80 LEU81 ASN82 ARG83 HIS84 LEU85 SER86 ARG87 ALA88 TYR89 ASN98 GLU99 GLY100 PHE101 VAL102 GLU103 VAL104 LEU105 ALA106 ALA107 GLN108 GLN109 SER110 PRO111 GLU112 GLY119 THR120 ALA121 ASP122 ALA123 VAL124 ARG125 GLN126 TYR127 LEU128 TRP129 LEU130 PHE131 GLU132 GLU133 HIS134 THR135 VAL136 LEU137 GLU138 TYR139 LEU140 ILE141 LEU142 ALA143 GLY144 ASP145 HIS146 LEU147 TYR148 ARG149 MET150 ASP151 TYR152 GLU153 LYS154 PHE155 ILE156 GLN157 ALA158 HIS159 ARG160 GLU161 THR162 ASP163 ALA164 ASP165 ILE166 THR167 VAL168 ALA169 ALA170 LEU171 PRO172 MET173 ASP174 GLU175 LYS176 ARG177 ALA178 THR179 ALA180 PHE181 GLY182 LEU183 MET184 LYS185 ILE186 ASP187 GLU188 GLU189 GLY190 ARG191 ILE192 ILE193 GLU194 PHE195 ALA196 GLU197 LYS198 PRO199 GLN200 GLY201 GLU202 GLN203 LEU204 GLN205 ALA206 MET207 LYS208 VAL209 ASP210 THR211 THR212 ILE213 LEU214 GLY215 LEU216 ASP217 ASP218 LYS219 ARG220 ALA221 LYS222 GLU223 MET224 PRO225 PHE226 ILE227 ALA228 SER229 MET230 GLY231 ILE232 TYR233 VAL234 ILE235 SER236 LYS237 ASP238 VAL239 MET240 LEU241 ASN242 LEU243 LEU244 ARG245 ASP246 LYS247 PHE248 PRO249 GLY250 ALA251 ASN252 ASP253 PHE254 GLY255 SER256 GLU257 VAL258 ILE259 PRO260 GLY261 ALA262 THR263 SER264 LEU265 GLY266 MET267 ARG268 VAL269 GLN270 ALA271 TYR272 LEU273 TYR274 ASP275 GLY276 TYR277 TRP278 GLU279 ASP280 ILE281 GLY282 THR283 ILE284 GLU285 ALA286 PHE287 TYR288 ASN289 ALA290 ASN291 LEU292 GLY293 ILE294 THR295 LYS296 LYS297 PRO298 VAL299 PRO300 ASP301 PHE302 SER303 PHE304 TYR305 ASP306 ARG307 SER308 ALA309 PRO310 ILE311 TYR312 THR313 GLN314 PRO315 ARG316 TYR317 LEU318 PRO319 PRO320 SER321 LYS322 MET323 LEU324 ASP325 ALA326 ASP327 VAL328 THR329 ASP330 SER331 VAL332 ILE333 GLY334 GLU335 GLY336 CYS337 VAL338 ILE339 LYS340 ASN341 CYS342 LYS343 ILE344 HIS345 HIS346 SER347 VAL348 VAL349 GLY350 LEU351 ARG352 SER353 CYS354 ILE355 SER356 GLU357 GLY358 ALA359 ILE360 ILE361 GLU362 ASP363 SER364 LEU365 LEU366 MET367 GLY368 ALA369 ASP370 TYR371 TYR372 GLU373 THR374 ASP375 ALA376 ASP377 ARG378 LYS379 LEU380 LEU381 ALA382 ALA383 LYS384 GLY385 SER386 VAL387 PRO388 ILE389 GLY390 ILE391 GLY392 LYS393 ASN394 CYS395 HIS396 ILE397 LYS398 ARG399 ALA400 ILE401 ILE402 ASP403 LYS404 ASN405 ALA406 ARG407 ILE408 GLY409 ASP410 ASN411 VAL412 LYS413 ILE414 ILE415 ASN416 LYS417 ASP418 ASN419 VAL420 GLN421 GLU422 ALA423 ALA424 ARG425 GLU426 THR427 ASP428 GLY429 TYR430 PHE431 ILE432 LYS433 SER434 GLY435 ILE436 VAL437 THR438 VAL439 ILE440 LYS441 ASP442 ALA443 LEU444 ILE445 PRO446 SER447 GLY448 ILE449 ILE450 ILE451
Ligands
Unit 5 ATP757 SO41000 SO41007 SO41008 SO41020
Unit 6 SO41001 SO41006 SO41009
Unit 7 ATP758 SO41002 SO41005 SO41010 SO41022
Unit 8 SO41003 SO41011
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany