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Title | MOLECULAR STRUCTURE OF D-HYDANTOINASE FROM A BACILLUS SP. AR EVIDENCE FOR MERCURY INHIBITION | |
Keywords | TIM-BARREL; HYDANTOINASE; BINUCLEAR METAL-BINDING; HYDROLASE HYDROLASE | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 1YNY | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | D-HYDANTOINASE | A | 455 | 3509 | 0 |
2 | Protein | D-HYDANTOINASE | B | 459 | 3538 | 0 |
3 | Ligand | D-HYDANTOINASE | A | 2 | 0 | 2 |
4 | Ligand | D-HYDANTOINASE | B | 2 | 0 | 2 |
5 | Water | 282 | 0 | 282 | ||
total | 1200 | 7047 | 286 |
Unit 1 | LYS2 LYS3 TRP4 ILE5 ARG6 GLY7 GLY8 THR9 VAL10 VAL11 THR12 ALA13 ALA14 ASP15 THR16 TYR17 GLN18 ALA19 ASP20 VAL21 LEU22 ILE23 GLU24 GLY25 GLU26 ARG27 VAL28 VAL29 ALA30 ILE31 GLY32 HIS33 GLN34 GLY39 ALA40 GLU41 GLU42 ILE43 ASP44 ALA45 THR46 GLY47 CYS48 TYR49 VAL50 ILE51 PRO52 GLY53 GLY54 ILE55 ASP56 PRO57 HIS58 THR59 HIS60 LEU61 ASP62 MET63 PRO64 PHE65 GLY66 GLY67 THR68 VAL69 THR70 ALA71 ASP72 ASP73 PHE74 PHE75 THR76 GLY77 THR78 ARG79 ALA80 ALA81 ALA82 PHE83 GLY84 GLY85 THR86 THR87 SER88 ILE89 VAL90 ASP91 PHE92 CYS93 LEU94 THR95 LYS96 LYS97 GLY98 GLU99 SER100 LEU101 LYS102 SER103 ALA104 ILE105 ALA106 THR107 TRP108 HIS109 GLU110 LYS111 ALA112 ARG113 GLY114 LYS115 ALA116 VAL117 ILE118 ASP119 TYR120 GLY121 PHE122 HIS123 LEU124 MET125 ILE126 ALA127 GLU128 ALA129 ASN130 ASP131 GLN132 VAL133 LEU134 GLU135 GLU136 LEU137 GLU138 SER139 VAL140 ILE141 SER142 SER143 GLU144 GLY145 ILE146 THR147 SER148 LEU149 LYS150 VAL151 PHE152 MET153 ALA154 TYR155 LYS156 ASN157 VAL158 PHE159 GLN160 ALA161 ASP162 ASP163 GLU164 THR165 LEU166 PHE167 LYS168 THR169 LEU170 VAL171 LYS172 ALA173 LYS174 GLU175 LEU176 GLY177 ALA178 LEU179 VAL180 GLN181 VAL182 HIS183 ALA184 GLU185 ASN186 GLY187 ASP188 VAL189 LEU190 ASP191 TYR192 LEU193 THR194 LYS195 LYS196 ALA197 LEU198 ALA199 GLU200 GLY201 ASN202 THR203 ASP204 PRO205 ILE206 TYR207 HIS208 ALA209 TYR210 THR211 ARG212 PRO213 PRO214 GLU215 ALA216 GLU217 GLY218 GLU219 ALA220 THR221 GLY222 ARG223 ALA224 ILE225 ALA226 LEU227 THR228 ALA229 LEU230 ALA231 GLY232 SER233 GLN234 LEU235 TYR236 VAL237 VAL238 HIS239 VAL240 SER241 CYS242 ALA243 SER244 ALA245 VAL246 GLN247 ARG248 ILE249 ALA250 GLU251 ALA252 ARG253 GLU254 LYS255 GLY256 TRP257 ASN258 VAL259 TYR260 GLY261 GLU262 THR263 CYS264 PRO265 GLN266 TYR267 LEU268 ALA269 LEU270 ASP271 VAL272 SER273 ILE274 MET275 ASP276 GLN277 PRO278 ASP279 PHE280 GLU281 GLY282 ALA283 LYS284 TYR285 VAL286 TRP287 SER288 PRO289 PRO290 LEU291 ARG292 GLU293 LYS294 TRP295 ASN296 GLN297 GLU298 VAL299 LEU300 TRP301 SER302 ALA303 LEU304 LYS305 ASN306 GLY307 ILE308 LEU309 GLN310 THR311 VAL312 GLY313 SER314 ASP315 HIS316 CYS317 PRO318 PHE319 ASN320 PHE321 ARG322 GLY323 GLN324 LYS325 GLU326 LEU327 GLY328 ARG329 GLY330 ASP331 PHE332 THR333 LYS334 ILE335 PRO336 ASN337 GLY338 GLY339 PRO340 LEU341 ILE342 GLU343 ASP344 ARG345 LEU346 THR347 ILE348 LEU349 TYR350 SER351 GLU352 GLY353 VAL354 ARG355 GLN356 GLY357 ARG358 ILE359 SER360 LEU361 ASN362 GLN363 PHE364 VAL365 ASP366 ILE367 SER368 SER369 THR370 LYS371 ALA372 ALA373 LYS374 LEU375 PHE376 GLY377 MET378 PHE379 PRO380 ARG381 LYS382 GLY383 THR384 ILE385 ALA386 VAL387 GLY388 SER389 ASP390 ALA391 ASP392 ILE393 VAL394 ILE395 PHE396 ASP397 PRO398 HIS399 VAL400 LYS401 ARG402 THR403 LEU404 SER405 VAL406 GLU407 THR408 HIS409 HIS410 MET411 ASN412 VAL413 ASP414 TYR415 ASN416 PRO417 PHE418 GLU419 GLY420 MET421 GLU422 VAL423 TYR424 GLY425 GLU426 VAL427 VAL428 SER429 VAL430 LEU431 SER432 ARG433 GLY434 SER435 PHE436 VAL437 VAL438 ARG439 ASP440 LYS441 GLN442 PHE443 VAL444 GLY445 GLN446 ALA447 GLY448 SER449 GLY450 GLN451 TYR452 ILE453 LYS454 ARG455 THR456 THR457 PHE458 GLU459 GLN460 |
Unit 2 | LYS2 LYS3 TRP4 ILE5 ARG6 GLY7 GLY8 THR9 VAL10 VAL11 THR12 ALA13 ALA14 ASP15 THR16 TYR17 GLN18 ALA19 ASP20 VAL21 LEU22 ILE23 GLU24 GLY25 GLU26 ARG27 VAL28 VAL29 ALA30 ILE31 GLY32 HIS33 GLN34 LEU35 SER36 VAL37 ASN38 GLY39 ALA40 GLU41 GLU42 ILE43 ASP44 ALA45 THR46 GLY47 CYS48 TYR49 VAL50 ILE51 PRO52 GLY53 GLY54 ILE55 ASP56 PRO57 HIS58 THR59 HIS60 LEU61 ASP62 MET63 PRO64 PHE65 GLY66 GLY67 THR68 VAL69 THR70 ALA71 ASP72 ASP73 PHE74 PHE75 THR76 GLY77 THR78 ARG79 ALA80 ALA81 ALA82 PHE83 GLY84 GLY85 THR86 THR87 SER88 ILE89 VAL90 ASP91 PHE92 CYS93 LEU94 THR95 LYS96 LYS97 GLY98 GLU99 SER100 LEU101 LYS102 SER103 ALA104 ILE105 ALA106 THR107 TRP108 HIS109 GLU110 LYS111 ALA112 ARG113 GLY114 LYS115 ALA116 VAL117 ILE118 ASP119 TYR120 GLY121 PHE122 HIS123 LEU124 MET125 ILE126 ALA127 GLU128 ALA129 ASN130 ASP131 GLN132 VAL133 LEU134 GLU135 GLU136 LEU137 GLU138 SER139 VAL140 ILE141 SER142 SER143 GLU144 GLY145 ILE146 THR147 SER148 LEU149 LYS150 VAL151 PHE152 MET153 ALA154 TYR155 LYS156 ASN157 VAL158 PHE159 GLN160 ALA161 ASP162 ASP163 GLU164 THR165 LEU166 PHE167 LYS168 THR169 LEU170 VAL171 LYS172 ALA173 LYS174 GLU175 LEU176 GLY177 ALA178 LEU179 VAL180 GLN181 VAL182 HIS183 ALA184 GLU185 ASN186 GLY187 ASP188 VAL189 LEU190 ASP191 TYR192 LEU193 THR194 LYS195 LYS196 ALA197 LEU198 ALA199 GLU200 GLY201 ASN202 THR203 ASP204 PRO205 ILE206 TYR207 HIS208 ALA209 TYR210 THR211 ARG212 PRO213 PRO214 GLU215 ALA216 GLU217 GLY218 GLU219 ALA220 THR221 GLY222 ARG223 ALA224 ILE225 ALA226 LEU227 THR228 ALA229 LEU230 ALA231 GLY232 SER233 GLN234 LEU235 TYR236 VAL237 VAL238 HIS239 VAL240 SER241 CYS242 ALA243 SER244 ALA245 VAL246 GLN247 ARG248 ILE249 ALA250 GLU251 ALA252 ARG253 GLU254 LYS255 GLY256 TRP257 ASN258 VAL259 TYR260 GLY261 GLU262 THR263 CYS264 PRO265 GLN266 TYR267 LEU268 ALA269 LEU270 ASP271 VAL272 SER273 ILE274 MET275 ASP276 GLN277 PRO278 ASP279 PHE280 GLU281 GLY282 ALA283 LYS284 TYR285 VAL286 TRP287 SER288 PRO289 PRO290 LEU291 ARG292 GLU293 LYS294 TRP295 ASN296 GLN297 GLU298 VAL299 LEU300 TRP301 SER302 ALA303 LEU304 LYS305 ASN306 GLY307 ILE308 LEU309 GLN310 THR311 VAL312 GLY313 SER314 ASP315 HIS316 CYS317 PRO318 PHE319 ASN320 PHE321 ARG322 GLY323 GLN324 LYS325 GLU326 LEU327 GLY328 ARG329 GLY330 ASP331 PHE332 THR333 LYS334 ILE335 PRO336 ASN337 GLY338 GLY339 PRO340 LEU341 ILE342 GLU343 ASP344 ARG345 LEU346 THR347 ILE348 LEU349 TYR350 SER351 GLU352 GLY353 VAL354 ARG355 GLN356 GLY357 ARG358 ILE359 SER360 LEU361 ASN362 GLN363 PHE364 VAL365 ASP366 ILE367 SER368 SER369 THR370 LYS371 ALA372 ALA373 LYS374 LEU375 PHE376 GLY377 MET378 PHE379 PRO380 ARG381 LYS382 GLY383 THR384 ILE385 ALA386 VAL387 GLY388 SER389 ASP390 ALA391 ASP392 ILE393 VAL394 ILE395 PHE396 ASP397 PRO398 HIS399 VAL400 LYS401 ARG402 THR403 LEU404 SER405 VAL406 GLU407 THR408 HIS409 HIS410 MET411 ASN412 VAL413 ASP414 TYR415 ASN416 PRO417 PHE418 GLU419 GLY420 MET421 GLU422 VAL423 TYR424 GLY425 GLU426 VAL427 VAL428 SER429 VAL430 LEU431 SER432 ARG433 GLY434 SER435 PHE436 VAL437 VAL438 ARG439 ASP440 LYS441 GLN442 PHE443 VAL444 GLY445 GLN446 ALA447 GLY448 SER449 GLY450 GLN451 TYR452 ILE453 LYS454 ARG455 THR456 THR457 PHE458 GLU459 GLN460 |
Unit 3 | MN471 MN472 |
Unit 4 | MN471 MN472 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |