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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE MONOMERIC FORM OF T. GONDII SAG1 SURFACE AN BOUND TO A HUMAN FAB
Keywords TOXOPLASMA GONDII, RECOMBINANT SAG1, CONFORMATIONAL EPITOPE, SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1YNT     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   4F11E12 FAB VARIABLE LIGHT CHAIN REGION  A 213 1658 0
2  Protein   4F11E12 FAB VARIABLE HEAVY CHAIN REGION  B 218 1657 0
3  Protein   4F11E12 FAB VARIABLE LIGHT CHAIN REGION  C 213 1658 0
4  Protein   4F11E12 FAB VARIABLE HEAVY CHAIN REGION  D 218 1657 0
5  Protein   PROTEIN L  E 61 476 0
6  Protein   MAJOR SURFACE ANTIGEN P30  F 252 1847 0
7  Protein   MAJOR SURFACE ANTIGEN P30  G 252 1847 0
8  Ligand   4F11E12 FAB VARIABLE HEAVY CHAIN REGION  B 1 0 1
9  Ligand   4F11E12 FAB VARIABLE HEAVY CHAIN REGION  D 1 0 1
total       1429 10800 2
Proteins
Unit 1 ASP1 ILE2 GLN3 VAL4 THR5 GLN6 THR7 THR8 SER9 SER10 LEU11 SER12 ALA13 SER14 LEU15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 SER22 CYS23 ARG24 ALA25 SER26 GLN27 ASP28 ILE29 SER30 ASN31 TYR32 LEU33 ASN34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 ASP41 GLY42 THR43 VAL44 LYS45 LEU46 LEU47 ILE48 TYR49 TYR50 THR51 SER52 ARG53 LEU54 HIS55 SER56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 TYR71 SER72 LEU73 THR74 ILE75 SER76 ASN77 LEU78 GLU79 GLN80 GLU81 ASP82 ILE83 ALA84 THR85 TYR86 PHE87 CYS88 GLN89 GLN90 GLY91 ASN92 THR93 LEU94 PRO95 TYR96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 ALA109 ASP110 ALA111 ALA112 PRO113 THR114 VAL115 SER116 ILE117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLN124 LEU125 THR126 SER127 GLY128 GLY129 ALA130 SER131 VAL132 VAL133 CYS134 PHE135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 LYS142 ASP143 ILE144 ASN145 VAL146 LYS147 TRP148 LYS149 ILE150 ASP151 GLY152 SER153 GLU154 ARG155 GLN156 ASN157 GLY158 VAL159 LEU160 ASN161 SER162 TRP163 THR164 ASP165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 MET175 SER176 SER177 THR178 LEU179 THR180 LEU181 THR182 LYS183 ASP184 GLU185 TYR186 GLU187 ARG188 HIS189 ASN190 SER191 TYR192 THR193 CYS194 GLU195 ALA196 THR197 HIS198 LYS199 THR200 SER201 THR202 SER203 PRO204 ILE205 VAL206 LYS207 SER208 PHE209 ASN210 ARG211 ASN212 GLU213
Unit 2 GLN501 VAL502 GLN503 LEU504 GLN505 GLN506 SER507 GLY508 ALA509 GLU510 LEU511 VAL512 ARG513 PRO514 GLY515 VAL516 SER517 VAL518 LYS519 ILE520 SER521 CYS522 LYS523 GLY524 SER525 GLY526 TYR527 THR528 PHE529 THR530 ASP531 TYR532 GLY533 MET534 HIS535 TRP536 VAL537 LYS538 GLN539 SER540 HIS541 ALA542 LYS543 SER544 LEU545 GLU546 TRP547 ILE548 GLY549 ILE550 ILE551 SER552 THR553 TYR554 SER555 GLY556 ASP557 ALA558 SER559 TYR560 ASN561 GLN562 LYS563 PHE564 LYS565 GLY566 LYS567 ALA568 THR569 MET570 THR571 VAL572 ASP573 LYS574 SER575 SER576 SER577 THR578 ALA579 TYR580 MET581 GLU582 LEU583 ALA584 ARG585 LEU586 THR587 SER588 GLU589 ASP590 SER591 ALA592 ILE593 TYR594 TYR595 CYS596 ALA597 ARG598 SER599 SER600 THR601 TRP602 TYR603 TYR604 PHE605 ASP606 TYR607 TRP608 GLY609 GLN610 GLY611 THR612 THR613 LEU614 THR615 VAL616 SER617 SER618 ALA619 LYS620 THR621 THR622 ALA623 PRO624 SER625 VAL626 TYR627 PRO628 LEU629 ALA630 PRO631 VAL632 CYS633 GLY634 ASP635 THR636 THR637 GLY638 SER639 SER640 VAL641 THR642 LEU643 GLY644 CYS645 LEU646 VAL647 LYS648 GLY649 TYR650 PHE651 PRO652 GLU653 PRO654 VAL655 THR656 LEU657 THR658 TRP659 ASN660 SER661 GLY662 SER663 LEU664 SER665 SER666 GLY667 VAL668 HIS669 THR670 PHE671 PRO672 ALA673 VAL674 LEU675 GLN676 SER677 ASP678 LEU679 TYR680 THR681 LEU682 SER683 SER684 SER685 VAL686 THR687 VAL688 THR689 SER690 SER691 THR692 TRP693 PRO694 SER695 GLN696 SER697 ILE698 THR699 CYS700 ASN701 VAL702 ALA703 HIS704 PRO705 ALA706 SER707 SER708 THR709 LYS710 VAL711 ASP712 LYS713 LYS714 ILE715 GLU716 PRO717 ARG718
Unit 3 ASP1001 ILE1002 GLN1003 VAL1004 THR1005 GLN1006 THR1007 THR1008 SER1009 SER1010 LEU1011 SER1012 ALA1013 SER1014 LEU1015 GLY1016 ASP1017 ARG1018 VAL1019 THR1020 ILE1021 SER1022 CYS1023 ARG1024 ALA1025 SER1026 GLN1027 ASP1028 ILE1029 SER1030 ASN1031 TYR1032 LEU1033 ASN1034 TRP1035 TYR1036 GLN1037 GLN1038 LYS1039 PRO1040 ASP1041 GLY1042 THR1043 VAL1044 LYS1045 LEU1046 LEU1047 ILE1048 TYR1049 TYR1050 THR1051 SER1052 ARG1053 LEU1054 HIS1055 SER1056 GLY1057 VAL1058 PRO1059 SER1060 ARG1061 PHE1062 SER1063 GLY1064 SER1065 GLY1066 SER1067 GLY1068 THR1069 ASP1070 TYR1071 SER1072 LEU1073 THR1074 ILE1075 SER1076 ASN1077 LEU1078 GLU1079 GLN1080 GLU1081 ASP1082 ILE1083 ALA1084 THR1085 TYR1086 PHE1087 CYS1088 GLN1089 GLN1090 GLY1091 ASN1092 THR1093 LEU1094 PRO1095 TYR1096 THR1097 PHE1098 GLY1099 GLY1100 GLY1101 THR1102 LYS1103 LEU1104 GLU1105 ILE1106 LYS1107 ARG1108 ALA1109 ASP1110 ALA1111 ALA1112 PRO1113 THR1114 VAL1115 SER1116 ILE1117 PHE1118 PRO1119 PRO1120 SER1121 SER1122 GLU1123 GLN1124 LEU1125 THR1126 SER1127 GLY1128 GLY1129 ALA1130 SER1131 VAL1132 VAL1133 CYS1134 PHE1135 LEU1136 ASN1137 ASN1138 PHE1139 TYR1140 PRO1141 LYS1142 ASP1143 ILE1144 ASN1145 VAL1146 LYS1147 TRP1148 LYS1149 ILE1150 ASP1151 GLY1152 SER1153 GLU1154 ARG1155 GLN1156 ASN1157 GLY1158 VAL1159 LEU1160 ASN1161 SER1162 TRP1163 THR1164 ASP1165 GLN1166 ASP1167 SER1168 LYS1169 ASP1170 SER1171 THR1172 TYR1173 SER1174 MET1175 SER1176 SER1177 THR1178 LEU1179 THR1180 LEU1181 THR1182 LYS1183 ASP1184 GLU1185 TYR1186 GLU1187 ARG1188 HIS1189 ASN1190 SER1191 TYR1192 THR1193 CYS1194 GLU1195 ALA1196 THR1197 HIS1198 LYS1199 THR1200 SER1201 THR1202 SER1203 PRO1204 ILE1205 VAL1206 LYS1207 SER1208 PHE1209 ASN1210 ARG1211 ASN1212 GLU1213
Unit 4 GLN1501 VAL1502 GLN1503 LEU1504 GLN1505 GLN1506 SER1507 GLY1508 ALA1509 GLU1510 LEU1511 VAL1512 ARG1513 PRO1514 GLY1515 VAL1516 SER1517 VAL1518 LYS1519 ILE1520 SER1521 CYS1522 LYS1523 GLY1524 SER1525 GLY1526 TYR1527 THR1528 PHE1529 THR1530 ASP1531 TYR1532 GLY1533 MET1534 HIS1535 TRP1536 VAL1537 LYS1538 GLN1539 SER1540 HIS1541 ALA1542 LYS1543 SER1544 LEU1545 GLU1546 TRP1547 ILE1548 GLY1549 ILE1550 ILE1551 SER1552 THR1553 TYR1554 SER1555 GLY1556 ASP1557 ALA1558 SER1559 TYR1560 ASN1561 GLN1562 LYS1563 PHE1564 LYS1565 GLY1566 LYS1567 ALA1568 THR1569 MET1570 THR1571 VAL1572 ASP1573 LYS1574 SER1575 SER1576 SER1577 THR1578 ALA1579 TYR1580 MET1581 GLU1582 LEU1583 ALA1584 ARG1585 LEU1586 THR1587 SER1588 GLU1589 ASP1590 SER1591 ALA1592 ILE1593 TYR1594 TYR1595 CYS1596 ALA1597 ARG1598 SER1599 SER1600 THR1601 TRP1602 TYR1603 TYR1604 PHE1605 ASP1606 TYR1607 TRP1608 GLY1609 GLN1610 GLY1611 THR1612 THR1613 LEU1614 THR1615 VAL1616 SER1617 SER1618 ALA1619 LYS1620 THR1621 THR1622 ALA1623 PRO1624 SER1625 VAL1626 TYR1627 PRO1628 LEU1629 ALA1630 PRO1631 VAL1632 CYS1633 GLY1634 ASP1635 THR1636 THR1637 GLY1638 SER1639 SER1640 VAL1641 THR1642 LEU1643 GLY1644 CYS1645 LEU1646 VAL1647 LYS1648 GLY1649 TYR1650 PHE1651 PRO1652 GLU1653 PRO1654 VAL1655 THR1656 LEU1657 THR1658 TRP1659 ASN1660 SER1661 GLY1662 SER1663 LEU1664 SER1665 SER1666 GLY1667 VAL1668 HIS1669 THR1670 PHE1671 PRO1672 ALA1673 VAL1674 LEU1675 GLN1676 SER1677 ASP1678 LEU1679 TYR1680 THR1681 LEU1682 SER1683 SER1684 SER1685 VAL1686 THR1687 VAL1688 THR1689 SER1690 SER1691 THR1692 TRP1693 PRO1694 SER1695 GLN1696 SER1697 ILE1698 THR1699 CYS1700 ASN1701 VAL1702 ALA1703 HIS1704 PRO1705 ALA1706 SER1707 SER1708 THR1709 LYS1710 VAL1711 ASP1712 LYS1713 LYS1714 ILE1715 GLU1716 PRO1717 ARG1718
Unit 5 GLU820 VAL821 THR822 ILE823 LYS824 VAL825 ASN826 LEU827 ILE828 PHE829 ALA830 ASP831 GLY832 LYS833 ILE834 GLN835 THR836 ALA837 GLU838 PHE839 LYS840 GLY841 THR842 PHE843 GLU844 GLU845 ALA846 THR847 ALA848 GLU849 ALA850 TYR851 ARG852 TYR853 ALA854 ASP855 LEU856 LEU857 ALA858 LYS859 VAL860 ASN861 GLY862 GLU863 TYR864 THR865 ALA866 ASP867 LEU868 GLU869 ASP870 GLY871 GLY872 ASN873 HIS874 MET875 ASN876 ILE877 LYS878 PHE879 ALA880
Unit 6 PRO2003 LEU2004 VAL2005 ALA2006 ASN2007 GLN2008 VAL2009 VAL2010 THR2011 CYS2012 PRO2013 ASP2014 LYS2015 LYS2016 SER2017 THR2018 ALA2019 ALA2020 VAL2021 ILE2022 LEU2023 THR2024 PRO2025 THR2026 GLU2027 ASN2028 HIS2029 PHE2030 THR2031 LEU2032 LYS2033 CYS2034 PRO2035 LYS2036 THR2037 ALA2038 LEU2039 THR2040 GLU2041 PRO2042 PRO2043 THR2044 LEU2045 ALA2046 TYR2047 SER2048 PRO2049 ASN2050 ARG2051 GLN2052 ILE2053 CYS2054 PRO2055 ALA2056 GLY2057 THR2058 THR2059 SER2060 SER2061 CYS2062 THR2063 SER2064 LYS2065 ALA2066 VAL2067 THR2068 LEU2069 SER2070 SER2071 LEU2072 ILE2073 PRO2074 GLU2075 ALA2076 GLU2077 ASP2078 SER2079 TRP2080 TRP2081 THR2082 GLY2083 ASP2084 SER2085 ALA2086 SER2087 LEU2088 ASP2089 THR2090 ALA2091 GLY2092 ILE2093 LYS2094 LEU2095 THR2096 VAL2097 PRO2098 ILE2099 GLU2100 LYS2101 PHE2102 PRO2103 VAL2104 THR2105 THR2106 GLN2107 THR2108 PHE2109 VAL2110 VAL2111 GLY2112 CYS2113 ILE2114 LYS2115 GLY2116 ASP2117 ASP2118 ALA2119 GLN2120 SER2121 CYS2122 MET2123 VAL2124 THR2125 VAL2126 THR2127 VAL2128 GLN2129 ALA2130 ARG2131 ALA2132 SER2133 SER2134 VAL2135 VAL2136 ASN2137 ASN2138 VAL2139 ALA2140 ARG2141 CYS2142 SER2143 TYR2144 GLY2145 ALA2146 ASP2147 SER2148 THR2149 LEU2150 GLY2151 PRO2152 VAL2153 LYS2154 LEU2155 SER2156 ALA2157 GLU2158 GLY2159 PRO2160 THR2161 THR2162 MET2163 THR2164 LEU2165 VAL2166 CYS2167 GLY2168 LYS2169 ASP2170 GLY2171 VAL2172 LYS2173 VAL2174 PRO2175 GLN2176 ASP2177 ASN2178 ASN2179 GLN2180 TYR2181 CYS2182 SER2183 GLY2184 THR2185 THR2186 LEU2187 THR2188 GLY2189 CYS2190 ASN2191 GLU2192 LYS2193 SER2194 PHE2195 LYS2196 ASP2197 ILE2198 LEU2199 PRO2200 LYS2201 LEU2202 THR2203 GLU2204 ASN2205 PRO2206 TRP2207 GLN2208 GLY2209 ASN2210 ALA2211 SER2212 SER2213 ASP2214 LYS2215 GLY2216 ALA2217 THR2218 LEU2219 THR2220 ILE2221 LYS2222 LYS2223 GLU2224 ALA2225 PHE2226 PRO2227 ALA2228 GLU2229 SER2230 LYS2231 SER2232 VAL2233 ILE2234 ILE2235 GLY2236 CYS2237 THR2238 GLY2239 GLY2240 SER2241 PRO2242 GLU2243 LYS2244 HIS2245 HIS2246 CYS2247 THR2248 VAL2249 LYS2250 LEU2251 GLU2252 PHE2253 ALA2254
Unit 7 PRO3003 LEU3004 VAL3005 ALA3006 ASN3007 GLN3008 VAL3009 VAL3010 THR3011 CYS3012 PRO3013 ASP3014 LYS3015 LYS3016 SER3017 THR3018 ALA3019 ALA3020 VAL3021 ILE3022 LEU3023 THR3024 PRO3025 THR3026 GLU3027 ASN3028 HIS3029 PHE3030 THR3031 LEU3032 LYS3033 CYS3034 PRO3035 LYS3036 THR3037 ALA3038 LEU3039 THR3040 GLU3041 PRO3042 PRO3043 THR3044 LEU3045 ALA3046 TYR3047 SER3048 PRO3049 ASN3050 ARG3051 GLN3052 ILE3053 CYS3054 PRO3055 ALA3056 GLY3057 THR3058 THR3059 SER3060 SER3061 CYS3062 THR3063 SER3064 LYS3065 ALA3066 VAL3067 THR3068 LEU3069 SER3070 SER3071 LEU3072 ILE3073 PRO3074 GLU3075 ALA3076 GLU3077 ASP3078 SER3079 TRP3080 TRP3081 THR3082 GLY3083 ASP3084 SER3085 ALA3086 SER3087 LEU3088 ASP3089 THR3090 ALA3091 GLY3092 ILE3093 LYS3094 LEU3095 THR3096 VAL3097 PRO3098 ILE3099 GLU3100 LYS3101 PHE3102 PRO3103 VAL3104 THR3105 THR3106 GLN3107 THR3108 PHE3109 VAL3110 VAL3111 GLY3112 CYS3113 ILE3114 LYS3115 GLY3116 ASP3117 ASP3118 ALA3119 GLN3120 SER3121 CYS3122 MET3123 VAL3124 THR3125 VAL3126 THR3127 VAL3128 GLN3129 ALA3130 ARG3131 ALA3132 SER3133 SER3134 VAL3135 VAL3136 ASN3137 ASN3138 VAL3139 ALA3140 ARG3141 CYS3142 SER3143 TYR3144 GLY3145 ALA3146 ASP3147 SER3148 THR3149 LEU3150 GLY3151 PRO3152 VAL3153 LYS3154 LEU3155 SER3156 ALA3157 GLU3158 GLY3159 PRO3160 THR3161 THR3162 MET3163 THR3164 LEU3165 VAL3166 CYS3167 GLY3168 LYS3169 ASP3170 GLY3171 VAL3172 LYS3173 VAL3174 PRO3175 GLN3176 ASP3177 ASN3178 ASN3179 GLN3180 TYR3181 CYS3182 SER3183 GLY3184 THR3185 THR3186 LEU3187 THR3188 GLY3189 CYS3190 ASN3191 GLU3192 LYS3193 SER3194 PHE3195 LYS3196 ASP3197 ILE3198 LEU3199 PRO3200 LYS3201 LEU3202 THR3203 GLU3204 ASN3205 PRO3206 TRP3207 GLN3208 GLY3209 ASN3210 ALA3211 SER3212 SER3213 ASP3214 LYS3215 GLY3216 ALA3217 THR3218 LEU3219 THR3220 ILE3221 LYS3222 LYS3223 GLU3224 ALA3225 PHE3226 PRO3227 ALA3228 GLU3229 SER3230 LYS3231 SER3232 VAL3233 ILE3234 ILE3235 GLY3236 CYS3237 THR3238 GLY3239 GLY3240 SER3241 PRO3242 GLU3243 LYS3244 HIS3245 HIS3246 CYS3247 THR3248 VAL3249 LYS3250 LEU3251 GLU3252 PHE3253 ALA3254
Ligands
Unit 8 CD4001
Unit 9 CD4002
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany