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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF N-SUCCINYLARGININE DIHYDROLASE, ASTB, BOUND TO SUBSTRATE AND PRODUCT, AN ENZYME FROM THE ARGININE CATABOLIC PATHWAY OF ESCHERICHIA COLI
Keywords SUCCINYLARGININE, DIHYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1YNH     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SUCCINYLARGININE DIHYDROLASE  A 439 3424 0
2  Protein   SUCCINYLARGININE DIHYDROLASE  B 440 3432 0
3  Protein   SUCCINYLARGININE DIHYDROLASE  C 439 3424 0
4  Protein   SUCCINYLARGININE DIHYDROLASE  D 439 3424 0
5  Ligand   SUCCINYLARGININE DIHYDROLASE  A 2 0 17
6  Ligand   SUCCINYLARGININE DIHYDROLASE  B 2 0 17
7  Ligand   SUCCINYLARGININE DIHYDROLASE  C 2 0 17
8  Ligand   SUCCINYLARGININE DIHYDROLASE  D 2 0 17
9 Water     982 0 982
total       2747 13704 1050
Proteins
Unit 1 ALA3 TRP4 GLU5 VAL6 ASN7 PHE8 ASP9 GLY10 LEU11 VAL12 GLY13 LEU14 THR15 HIS16 HIS17 TYR18 ALA19 GLY20 LEU21 SER22 PHE23 GLY24 ASN25 GLU26 ALA27 SER28 THR29 ARG30 HIS31 ARG32 PHE33 GLN34 VAL35 SER36 ASN37 PRO38 ARG39 LEU40 ALA41 ALA42 LYS43 GLN44 GLY45 LEU46 LEU47 LYS48 MET49 LYS50 ALA51 LEU52 ALA53 ASP54 ALA55 GLY56 PHE57 PRO58 GLN59 ALA60 VAL61 ILE62 PRO63 PRO64 HIS65 GLU66 ARG67 PRO68 PHE69 ILE70 PRO71 VAL72 LEU73 ARG74 GLN75 LEU76 GLY77 PHE78 SER79 GLY80 SER81 ASP82 GLU83 GLN84 VAL85 LEU86 GLU87 LYS88 VAL89 ALA90 ARG91 GLN92 ALA93 PRO94 HIS95 TRP96 LEU97 SER98 SER99 VAL100 SER101 SER102 ALA103 SER104 PRO105 MET106 TRP107 VAL108 ALA109 ASN110 ALA111 ALA112 THR113 ILE114 ALA115 PRO116 SER117 ALA118 ASP119 THR120 LEU121 ASP122 GLY123 LYS124 VAL125 HIS126 LEU127 THR128 VAL129 ALA130 ASN131 LEU132 ASN133 ASN134 LYS135 PHE136 HIS137 ARG138 SER139 LEU140 GLU141 ALA142 PRO143 VAL144 THR145 GLU146 SER147 LEU148 LEU149 LYS150 ALA151 ILE152 PHE153 ASN154 ASP155 GLU156 GLU157 LYS158 PHE159 SER160 VAL161 HIS162 SER163 ALA164 LEU165 PRO166 GLN167 VAL168 ALA169 LEU170 LEU171 GLY172 ASP173 GLU174 GLY175 ALA176 ALA177 ASN178 HIS179 ASN180 ARG181 LEU182 GLY183 GLY184 HIS185 TYR186 GLY187 GLU188 PRO189 GLY190 MET191 GLN192 LEU193 PHE194 VAL195 TYR196 GLY197 ARG198 GLU199 GLU200 GLY201 ASN202 ASP203 THR204 ARG205 PRO206 SER207 ARG208 TYR209 PRO210 ALA211 ARG212 GLN213 THR214 ARG215 GLU216 ALA217 SER218 GLU219 ALA220 VAL221 ALA222 ARG223 LEU224 ASN225 GLN226 VAL227 ASN228 PRO229 GLN230 GLN231 VAL232 ILE233 PHE234 ALA235 GLN236 GLN237 ASN238 PRO239 ASP240 VAL241 ILE242 ASP243 GLN244 GLY245 VAL246 PHE247 HIS248 ASN249 ASP250 VAL251 ILE252 ALA253 VAL254 SER255 ASN256 ARG257 GLN258 VAL259 LEU260 PHE261 CYS262 HIS263 GLN264 GLN265 ALA266 PHE267 ALA268 ARG269 GLN270 SER271 GLN272 LEU273 LEU274 ALA275 ASN276 LEU277 ARG278 ALA279 ARG280 VAL281 ASN282 GLY283 PHE284 MET285 ALA286 ILE287 GLU288 VAL289 PRO290 ALA291 THR292 GLN293 VAL294 SER295 VAL296 SER297 ASP298 THR299 VAL300 SER301 THR302 TYR303 LEU304 PHE305 ASN306 SER307 GLN308 LEU309 LEU310 SER311 ARG312 ASP313 ASP314 GLY315 SER316 MET317 MET318 LEU319 VAL320 LEU321 PRO322 GLN323 GLU324 CYS325 ARG326 GLU327 HIS328 ALA329 GLY330 VAL331 TRP332 GLY333 TYR334 LEU335 ASN336 GLU337 LEU338 LEU339 ALA340 ALA341 ASP342 ASN343 PRO344 ILE345 SER346 GLU347 LEU348 LYS349 VAL350 PHE351 ASP352 LEU353 ARG354 GLU355 SER356 MET357 ALA358 ASN359 GLY360 GLY361 GLY362 PRO363 ALA364 CYS365 LEU366 ARG367 LEU368 ARG369 VAL370 VAL371 LEU372 THR373 GLU374 GLU375 GLU376 ARG377 ARG378 ALA379 VAL380 ASN381 PRO382 ALA383 VAL384 MET385 MET386 ASN387 ASP388 THR389 LEU390 PHE391 ASN392 ALA393 LEU394 ASN395 ASP396 TRP397 VAL398 ASP399 ARG400 TYR401 TYR402 ARG403 ASP404 ARG405 LEU406 THR407 ALA408 ALA409 ASP410 LEU411 ALA412 ASP413 PRO414 GLN415 LEU416 LEU417 ARG418 GLU419 GLY420 ARG421 GLU422 ALA423 LEU424 ASP425 VAL426 LEU427 SER428 GLN429 LEU430 LEU431 ASN432 LEU433 GLY434 SER435 VAL436 TYR437 PRO438 PHE439 GLN440 ARG441
Unit 2 ASN2 ALA3 TRP4 GLU5 VAL6 ASN7 PHE8 ASP9 GLY10 LEU11 VAL12 GLY13 LEU14 THR15 HIS16 HIS17 TYR18 ALA19 GLY20 LEU21 SER22 PHE23 GLY24 ASN25 GLU26 ALA27 SER28 THR29 ARG30 HIS31 ARG32 PHE33 GLN34 VAL35 SER36 ASN37 PRO38 ARG39 LEU40 ALA41 ALA42 LYS43 GLN44 GLY45 LEU46 LEU47 LYS48 MET49 LYS50 ALA51 LEU52 ALA53 ASP54 ALA55 GLY56 PHE57 PRO58 GLN59 ALA60 VAL61 ILE62 PRO63 PRO64 HIS65 GLU66 ARG67 PRO68 PHE69 ILE70 PRO71 VAL72 LEU73 ARG74 GLN75 LEU76 GLY77 PHE78 SER79 GLY80 SER81 ASP82 GLU83 GLN84 VAL85 LEU86 GLU87 LYS88 VAL89 ALA90 ARG91 GLN92 ALA93 PRO94 HIS95 TRP96 LEU97 SER98 SER99 VAL100 SER101 SER102 ALA103 SER104 PRO105 MET106 TRP107 VAL108 ALA109 ASN110 ALA111 ALA112 THR113 ILE114 ALA115 PRO116 SER117 ALA118 ASP119 THR120 LEU121 ASP122 GLY123 LYS124 VAL125 HIS126 LEU127 THR128 VAL129 ALA130 ASN131 LEU132 ASN133 ASN134 LYS135 PHE136 HIS137 ARG138 SER139 LEU140 GLU141 ALA142 PRO143 VAL144 THR145 GLU146 SER147 LEU148 LEU149 LYS150 ALA151 ILE152 PHE153 ASN154 ASP155 GLU156 GLU157 LYS158 PHE159 SER160 VAL161 HIS162 SER163 ALA164 LEU165 PRO166 GLN167 VAL168 ALA169 LEU170 LEU171 GLY172 ASP173 GLU174 GLY175 ALA176 ALA177 ASN178 HIS179 ASN180 ARG181 LEU182 GLY183 GLY184 HIS185 TYR186 GLY187 GLU188 PRO189 GLY190 MET191 GLN192 LEU193 PHE194 VAL195 TYR196 GLY197 ARG198 GLU199 GLU200 GLY201 ASN202 ASP203 THR204 ARG205 PRO206 SER207 ARG208 TYR209 PRO210 ALA211 ARG212 GLN213 THR214 ARG215 GLU216 ALA217 SER218 GLU219 ALA220 VAL221 ALA222 ARG223 LEU224 ASN225 GLN226 VAL227 ASN228 PRO229 GLN230 GLN231 VAL232 ILE233 PHE234 ALA235 GLN236 GLN237 ASN238 PRO239 ASP240 VAL241 ILE242 ASP243 GLN244 GLY245 VAL246 PHE247 HIS248 ASN249 ASP250 VAL251 ILE252 ALA253 VAL254 SER255 ASN256 ARG257 GLN258 VAL259 LEU260 PHE261 CYS262 HIS263 GLN264 GLN265 ALA266 PHE267 ALA268 ARG269 GLN270 SER271 GLN272 LEU273 LEU274 ALA275 ASN276 LEU277 ARG278 ALA279 ARG280 VAL281 ASN282 GLY283 PHE284 MET285 ALA286 ILE287 GLU288 VAL289 PRO290 ALA291 THR292 GLN293 VAL294 SER295 VAL296 SER297 ASP298 THR299 VAL300 SER301 THR302 TYR303 LEU304 PHE305 ASN306 SER307 GLN308 LEU309 LEU310 SER311 ARG312 ASP313 ASP314 GLY315 SER316 MET317 MET318 LEU319 VAL320 LEU321 PRO322 GLN323 GLU324 CYS325 ARG326 GLU327 HIS328 ALA329 GLY330 VAL331 TRP332 GLY333 TYR334 LEU335 ASN336 GLU337 LEU338 LEU339 ALA340 ALA341 ASP342 ASN343 PRO344 ILE345 SER346 GLU347 LEU348 LYS349 VAL350 PHE351 ASP352 LEU353 ARG354 GLU355 SER356 MET357 ALA358 ASN359 GLY360 GLY361 GLY362 PRO363 ALA364 CYS365 LEU366 ARG367 LEU368 ARG369 VAL370 VAL371 LEU372 THR373 GLU374 GLU375 GLU376 ARG377 ARG378 ALA379 VAL380 ASN381 PRO382 ALA383 VAL384 MET385 MET386 ASN387 ASP388 THR389 LEU390 PHE391 ASN392 ALA393 LEU394 ASN395 ASP396 TRP397 VAL398 ASP399 ARG400 TYR401 TYR402 ARG403 ASP404 ARG405 LEU406 THR407 ALA408 ALA409 ASP410 LEU411 ALA412 ASP413 PRO414 GLN415 LEU416 LEU417 ARG418 GLU419 GLY420 ARG421 GLU422 ALA423 LEU424 ASP425 VAL426 LEU427 SER428 GLN429 LEU430 LEU431 ASN432 LEU433 GLY434 SER435 VAL436 TYR437 PRO438 PHE439 GLN440 ARG441
Unit 3 ALA3 TRP4 GLU5 VAL6 ASN7 PHE8 ASP9 GLY10 LEU11 VAL12 GLY13 LEU14 THR15 HIS16 HIS17 TYR18 ALA19 GLY20 LEU21 SER22 PHE23 GLY24 ASN25 GLU26 ALA27 SER28 THR29 ARG30 HIS31 ARG32 PHE33 GLN34 VAL35 SER36 ASN37 PRO38 ARG39 LEU40 ALA41 ALA42 LYS43 GLN44 GLY45 LEU46 LEU47 LYS48 MET49 LYS50 ALA51 LEU52 ALA53 ASP54 ALA55 GLY56 PHE57 PRO58 GLN59 ALA60 VAL61 ILE62 PRO63 PRO64 HIS65 GLU66 ARG67 PRO68 PHE69 ILE70 PRO71 VAL72 LEU73 ARG74 GLN75 LEU76 GLY77 PHE78 SER79 GLY80 SER81 ASP82 GLU83 GLN84 VAL85 LEU86 GLU87 LYS88 VAL89 ALA90 ARG91 GLN92 ALA93 PRO94 HIS95 TRP96 LEU97 SER98 SER99 VAL100 SER101 SER102 ALA103 SER104 PRO105 MET106 TRP107 VAL108 ALA109 ASN110 ALA111 ALA112 THR113 ILE114 ALA115 PRO116 SER117 ALA118 ASP119 THR120 LEU121 ASP122 GLY123 LYS124 VAL125 HIS126 LEU127 THR128 VAL129 ALA130 ASN131 LEU132 ASN133 ASN134 LYS135 PHE136 HIS137 ARG138 SER139 LEU140 GLU141 ALA142 PRO143 VAL144 THR145 GLU146 SER147 LEU148 LEU149 LYS150 ALA151 ILE152 PHE153 ASN154 ASP155 GLU156 GLU157 LYS158 PHE159 SER160 VAL161 HIS162 SER163 ALA164 LEU165 PRO166 GLN167 VAL168 ALA169 LEU170 LEU171 GLY172 ASP173 GLU174 GLY175 ALA176 ALA177 ASN178 HIS179 ASN180 ARG181 LEU182 GLY183 GLY184 HIS185 TYR186 GLY187 GLU188 PRO189 GLY190 MET191 GLN192 LEU193 PHE194 VAL195 TYR196 GLY197 ARG198 GLU199 GLU200 GLY201 ASN202 ASP203 THR204 ARG205 PRO206 SER207 ARG208 TYR209 PRO210 ALA211 ARG212 GLN213 THR214 ARG215 GLU216 ALA217 SER218 GLU219 ALA220 VAL221 ALA222 ARG223 LEU224 ASN225 GLN226 VAL227 ASN228 PRO229 GLN230 GLN231 VAL232 ILE233 PHE234 ALA235 GLN236 GLN237 ASN238 PRO239 ASP240 VAL241 ILE242 ASP243 GLN244 GLY245 VAL246 PHE247 HIS248 ASN249 ASP250 VAL251 ILE252 ALA253 VAL254 SER255 ASN256 ARG257 GLN258 VAL259 LEU260 PHE261 CYS262 HIS263 GLN264 GLN265 ALA266 PHE267 ALA268 ARG269 GLN270 SER271 GLN272 LEU273 LEU274 ALA275 ASN276 LEU277 ARG278 ALA279 ARG280 VAL281 ASN282 GLY283 PHE284 MET285 ALA286 ILE287 GLU288 VAL289 PRO290 ALA291 THR292 GLN293 VAL294 SER295 VAL296 SER297 ASP298 THR299 VAL300 SER301 THR302 TYR303 LEU304 PHE305 ASN306 SER307 GLN308 LEU309 LEU310 SER311 ARG312 ASP313 ASP314 GLY315 SER316 MET317 MET318 LEU319 VAL320 LEU321 PRO322 GLN323 GLU324 CYS325 ARG326 GLU327 HIS328 ALA329 GLY330 VAL331 TRP332 GLY333 TYR334 LEU335 ASN336 GLU337 LEU338 LEU339 ALA340 ALA341 ASP342 ASN343 PRO344 ILE345 SER346 GLU347 LEU348 LYS349 VAL350 PHE351 ASP352 LEU353 ARG354 GLU355 SER356 MET357 ALA358 ASN359 GLY360 GLY361 GLY362 PRO363 ALA364 CYS365 LEU366 ARG367 LEU368 ARG369 VAL370 VAL371 LEU372 THR373 GLU374 GLU375 GLU376 ARG377 ARG378 ALA379 VAL380 ASN381 PRO382 ALA383 VAL384 MET385 MET386 ASN387 ASP388 THR389 LEU390 PHE391 ASN392 ALA393 LEU394 ASN395 ASP396 TRP397 VAL398 ASP399 ARG400 TYR401 TYR402 ARG403 ASP404 ARG405 LEU406 THR407 ALA408 ALA409 ASP410 LEU411 ALA412 ASP413 PRO414 GLN415 LEU416 LEU417 ARG418 GLU419 GLY420 ARG421 GLU422 ALA423 LEU424 ASP425 VAL426 LEU427 SER428 GLN429 LEU430 LEU431 ASN432 LEU433 GLY434 SER435 VAL436 TYR437 PRO438 PHE439 GLN440 ARG441
Unit 4 ALA3 TRP4 GLU5 VAL6 ASN7 PHE8 ASP9 GLY10 LEU11 VAL12 GLY13 LEU14 THR15 HIS16 HIS17 TYR18 ALA19 GLY20 LEU21 SER22 PHE23 GLY24 ASN25 GLU26 ALA27 SER28 THR29 ARG30 HIS31 ARG32 PHE33 GLN34 VAL35 SER36 ASN37 PRO38 ARG39 LEU40 ALA41 ALA42 LYS43 GLN44 GLY45 LEU46 LEU47 LYS48 MET49 LYS50 ALA51 LEU52 ALA53 ASP54 ALA55 GLY56 PHE57 PRO58 GLN59 ALA60 VAL61 ILE62 PRO63 PRO64 HIS65 GLU66 ARG67 PRO68 PHE69 ILE70 PRO71 VAL72 LEU73 ARG74 GLN75 LEU76 GLY77 PHE78 SER79 GLY80 SER81 ASP82 GLU83 GLN84 VAL85 LEU86 GLU87 LYS88 VAL89 ALA90 ARG91 GLN92 ALA93 PRO94 HIS95 TRP96 LEU97 SER98 SER99 VAL100 SER101 SER102 ALA103 SER104 PRO105 MET106 TRP107 VAL108 ALA109 ASN110 ALA111 ALA112 THR113 ILE114 ALA115 PRO116 SER117 ALA118 ASP119 THR120 LEU121 ASP122 GLY123 LYS124 VAL125 HIS126 LEU127 THR128 VAL129 ALA130 ASN131 LEU132 ASN133 ASN134 LYS135 PHE136 HIS137 ARG138 SER139 LEU140 GLU141 ALA142 PRO143 VAL144 THR145 GLU146 SER147 LEU148 LEU149 LYS150 ALA151 ILE152 PHE153 ASN154 ASP155 GLU156 GLU157 LYS158 PHE159 SER160 VAL161 HIS162 SER163 ALA164 LEU165 PRO166 GLN167 VAL168 ALA169 LEU170 LEU171 GLY172 ASP173 GLU174 GLY175 ALA176 ALA177 ASN178 HIS179 ASN180 ARG181 LEU182 GLY183 GLY184 HIS185 TYR186 GLY187 GLU188 PRO189 GLY190 MET191 GLN192 LEU193 PHE194 VAL195 TYR196 GLY197 ARG198 GLU199 GLU200 GLY201 ASN202 ASP203 THR204 ARG205 PRO206 SER207 ARG208 TYR209 PRO210 ALA211 ARG212 GLN213 THR214 ARG215 GLU216 ALA217 SER218 GLU219 ALA220 VAL221 ALA222 ARG223 LEU224 ASN225 GLN226 VAL227 ASN228 PRO229 GLN230 GLN231 VAL232 ILE233 PHE234 ALA235 GLN236 GLN237 ASN238 PRO239 ASP240 VAL241 ILE242 ASP243 GLN244 GLY245 VAL246 PHE247 HIS248 ASN249 ASP250 VAL251 ILE252 ALA253 VAL254 SER255 ASN256 ARG257 GLN258 VAL259 LEU260 PHE261 CYS262 HIS263 GLN264 GLN265 ALA266 PHE267 ALA268 ARG269 GLN270 SER271 GLN272 LEU273 LEU274 ALA275 ASN276 LEU277 ARG278 ALA279 ARG280 VAL281 ASN282 GLY283 PHE284 MET285 ALA286 ILE287 GLU288 VAL289 PRO290 ALA291 THR292 GLN293 VAL294 SER295 VAL296 SER297 ASP298 THR299 VAL300 SER301 THR302 TYR303 LEU304 PHE305 ASN306 SER307 GLN308 LEU309 LEU310 SER311 ARG312 ASP313 ASP314 GLY315 SER316 MET317 MET318 LEU319 VAL320 LEU321 PRO322 GLN323 GLU324 CYS325 ARG326 GLU327 HIS328 ALA329 GLY330 VAL331 TRP332 GLY333 TYR334 LEU335 ASN336 GLU337 LEU338 LEU339 ALA340 ALA341 ASP342 ASN343 PRO344 ILE345 SER346 GLU347 LEU348 LYS349 VAL350 PHE351 ASP352 LEU353 ARG354 GLU355 SER356 MET357 ALA358 ASN359 GLY360 GLY361 GLY362 PRO363 ALA364 CYS365 LEU366 ARG367 LEU368 ARG369 VAL370 VAL371 LEU372 THR373 GLU374 GLU375 GLU376 ARG377 ARG378 ALA379 VAL380 ASN381 PRO382 ALA383 VAL384 MET385 MET386 ASN387 ASP388 THR389 LEU390 PHE391 ASN392 ALA393 LEU394 ASN395 ASP396 TRP397 VAL398 ASP399 ARG400 TYR401 TYR402 ARG403 ASP404 ARG405 LEU406 THR407 ALA408 ALA409 ASP410 LEU411 ALA412 ASP413 PRO414 GLN415 LEU416 LEU417 ARG418 GLU419 GLY420 ARG421 GLU422 ALA423 LEU424 ASP425 VAL426 LEU427 SER428 GLN429 LEU430 LEU431 ASN432 LEU433 GLY434 SER435 VAL436 TYR437 PRO438 PHE439 GLN440 ARG441
Ligands
Unit 5 SUO1001 K2001
Unit 6 SUO1002 K2002
Unit 7 SUO1003 K2003
Unit 8 SUO1004 K2004
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany