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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF BACULOVIRUS RNA 5'-PHOSPHATASE COMPLEXED WITH PHOSPHATE
Keywords RNA TRIPHOSPHATASE, CYSTEINE PHOSPHATASE, P-LOOP, HYDROLASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1YN9     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   POLYNUCLEOTIDE 5'-PHOSPHATASE  A 170 2641 10
2  Protein   POLYNUCLEOTIDE 5'-PHOSPHATASE  B 169 1366 0
3  Protein   POLYNUCLEOTIDE 5'-PHOSPHATASE  C 170 2641 10
4  Ligand   POLYNUCLEOTIDE 5'-PHOSPHATASE  A 2 0 10
5  Protein   POLYNUCLEOTIDE 5'-PHOSPHATASE  B 170 2641 10
6  Ligand   POLYNUCLEOTIDE 5'-PHOSPHATASE  C 2 0 10
7 Water     597 0 597
total       1280 9289 647

Proteins
Unit 1 MET1 PHE2 PRO3 ALA4 ARG5 TRP6 HIS7 ASN8 TYR9 LEU10 GLN11 CYS12 GLY13 GLN14 VAL15 ILE16 LYS17 ASP18 SER19 ASN20 LEU21 ILE22 CYS23 PHE24 LYS25 THR26 PRO27 LEU28 ARG29 PRO30 GLU31 LEU32 PHE33 ALA34 TYR35 VAL36 THR37 SER38 GLU39 GLU40 ASP41 VAL42 TRP43 THR44 ALA45 GLU46 GLN47 ILE48 VAL49 LYS50 GLN51 ASN52 PRO53 SER54 ILE55 GLY56 ALA57 ILE58 ILE59 ASP60 LEU61 THR62 ASN63 THR64 SER65 LYS66 TYR67 TYR68 ASP69 GLY70 VAL71 HIS72 PHE73 LEU74 ARG75 ALA76 GLY77 LEU78 LEU79 TYR80 LYS81 LYS82 ILE83 GLN84 VAL85 PRO86 GLY87 GLN88 THR89 LEU90 PRO91 PRO92 GLU93 SER94 ILE95 VAL96 GLN97 GLU98 PHE99 ILE100 ASP101 THR102 VAL103 LYS104 GLU105 PHE106 THR107 GLU108 LYS109 CYS110 PRO111 GLY112 MET113 LEU114 VAL115 GLY116 VAL117 HIS118 CYS119 THR120 HIS121 GLY122 ILE123 ASN124 ARG125 THR126 GLY127 TYR128 MET129 VAL130 CYS131 ARG132 TYR133 LEU134 MET135 HIS136 THR137 LEU138 GLY139 ILE140 ALA141 PRO142 GLN143 GLU144 ALA145 ILE146 ASP147 ARG148 PHE149 GLU150 LYS151 ALA152 ARG153 GLY154 HIS155 LYS156 ILE157 GLU158 ARG159 GLN160 ASN161 TYR162 VAL163 GLN164 ASP165 LEU166 LEU167 ILE168 PO4603 PO4604
Unit 2 HIS0 MET1 PHE2 PRO3 ALA4 ARG5 TRP6 HIS7 ASN8 TYR9 LEU10 GLN11 CYS12 GLY13 GLN14 VAL15 ILE16 LYS17 ASP18 SER19 ASN20 LEU21 ILE22 CYS23 PHE24 LYS25 THR26 PRO27 LEU28 ARG29 PRO30 GLU31 LEU32 PHE33 ALA34 TYR35 VAL36 THR37 SER38 GLU39 GLU40 ASP41 VAL42 TRP43 THR44 ALA45 GLU46 GLN47 ILE48 VAL49 LYS50 GLN51 ASN52 PRO53 SER54 ILE55 GLY56 ALA57 ILE58 ILE59 ASP60 LEU61 THR62 ASN63 THR64 SER65 LYS66 TYR67 TYR68 ASP69 GLY70 VAL71 HIS72 PHE73 LEU74 ARG75 ALA76 GLY77 LEU78 LEU79 TYR80 LYS81 LYS82 ILE83 GLN84 VAL85 PRO86 GLY87 GLN88 THR89 LEU90 PRO91 PRO92 GLU93 SER94 ILE95 VAL96 GLN97 GLU98 PHE99 ILE100 ASP101 THR102 VAL103 LYS104 GLU105 PHE106 THR107 GLU108 LYS109 CYS110 PRO111 GLY112 MET113 LEU114 VAL115 GLY116 VAL117 HIS118 CYS119 THR120 HIS121 GLY122 ILE123 ASN124 ARG125 THR126 GLY127 TYR128 MET129 VAL130 CYS131 ARG132 TYR133 LEU134 MET135 HIS136 THR137 LEU138 GLY139 ILE140 ALA141 PRO142 GLN143 GLU144 ALA145 ILE146 ASP147 ARG148 PHE149 GLU150 LYS151 ALA152 ARG153 GLY154 HIS155 LYS156 ILE157 GLU158 ARG159 GLN160 ASN161 TYR162 VAL163 GLN164 ASP165 LEU166 LEU167 ILE168
Unit 3 MET1 PHE2 PRO3 ALA4 ARG5 TRP6 HIS7 ASN8 TYR9 LEU10 GLN11 CYS12 GLY13 GLN14 VAL15 ILE16 LYS17 ASP18 SER19 ASN20 LEU21 ILE22 CYS23 PHE24 LYS25 THR26 PRO27 LEU28 ARG29 PRO30 GLU31 LEU32 PHE33 ALA34 TYR35 VAL36 THR37 SER38 GLU39 GLU40 ASP41 VAL42 TRP43 THR44 ALA45 GLU46 GLN47 ILE48 VAL49 LYS50 GLN51 ASN52 PRO53 SER54 ILE55 GLY56 ALA57 ILE58 ILE59 ASP60 LEU61 THR62 ASN63 THR64 SER65 LYS66 TYR67 TYR68 ASP69 GLY70 VAL71 HIS72 PHE73 LEU74 ARG75 ALA76 GLY77 LEU78 LEU79 TYR80 LYS81 LYS82 ILE83 GLN84 VAL85 PRO86 GLY87 GLN88 THR89 LEU90 PRO91 PRO92 GLU93 SER94 ILE95 VAL96 GLN97 GLU98 PHE99 ILE100 ASP101 THR102 VAL103 LYS104 GLU105 PHE106 THR107 GLU108 LYS109 CYS110 PRO111 GLY112 MET113 LEU114 VAL115 GLY116 VAL117 HIS118 CYS119 THR120 HIS121 GLY122 ILE123 ASN124 ARG125 THR126 GLY127 TYR128 MET129 VAL130 CYS131 ARG132 TYR133 LEU134 MET135 HIS136 THR137 LEU138 GLY139 ILE140 ALA141 PRO142 GLN143 GLU144 ALA145 ILE146 ASP147 ARG148 PHE149 GLU150 LYS151 ALA152 ARG153 GLY154 HIS155 LYS156 ILE157 GLU158 ARG159 GLN160 ASN161 TYR162 VAL163 GLN164 ASP165 LEU166 LEU167 ILE168 PO4603 PO4604
Unit 5 MET1 PHE2 PRO3 ALA4 ARG5 TRP6 HIS7 ASN8 TYR9 LEU10 GLN11 CYS12 GLY13 GLN14 VAL15 ILE16 LYS17 ASP18 SER19 ASN20 LEU21 ILE22 CYS23 PHE24 LYS25 THR26 PRO27 LEU28 ARG29 PRO30 GLU31 LEU32 PHE33 ALA34 TYR35 VAL36 THR37 SER38 GLU39 GLU40 ASP41 VAL42 TRP43 THR44 ALA45 GLU46 GLN47 ILE48 VAL49 LYS50 GLN51 ASN52 PRO53 SER54 ILE55 GLY56 ALA57 ILE58 ILE59 ASP60 LEU61 THR62 ASN63 THR64 SER65 LYS66 TYR67 TYR68 ASP69 GLY70 VAL71 HIS72 PHE73 LEU74 ARG75 ALA76 GLY77 LEU78 LEU79 TYR80 LYS81 LYS82 ILE83 GLN84 VAL85 PRO86 GLY87 GLN88 THR89 LEU90 PRO91 PRO92 GLU93 SER94 ILE95 VAL96 GLN97 GLU98 PHE99 ILE100 ASP101 THR102 VAL103 LYS104 GLU105 PHE106 THR107 GLU108 LYS109 CYS110 PRO111 GLY112 MET113 LEU114 VAL115 GLY116 VAL117 HIS118 CYS119 THR120 HIS121 GLY122 ILE123 ASN124 ARG125 THR126 GLY127 TYR128 MET129 VAL130 CYS131 ARG132 TYR133 LEU134 MET135 HIS136 THR137 LEU138 GLY139 ILE140 ALA141 PRO142 GLN143 GLU144 ALA145 ILE146 ASP147 ARG148 PHE149 GLU150 LYS151 ALA152 ARG153 GLY154 HIS155 LYS156 ILE157 GLU158 ARG159 GLN160 ASN161 TYR162 VAL163 GLN164 ASP165 LEU166 LEU167 ILE168 PO4603 PO4604

Ligands
Unit 4 PO4601 PO4602
Unit 6 PO4605 PO4606

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany