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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE TANDEM GAF DOMAINS FROM A CYANOBACT ADENYLYL CYCLASE: NOVEL MODES OF LIGAND-BINDING AND DIMERIZ
Keywords GAF DOMAIN, BOUND CYCLIC AMP LIGAND, LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1YKD     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ADENYLATE CYCLASE  A 383 3027 0
2  Protein   ADENYLATE CYCLASE  B 380 3004 0
3  Ligand   ADENYLATE CYCLASE  A 2 0 44
4  Ligand   ADENYLATE CYCLASE  B 2 0 44
5 Water     475 0 475
total       1242 6031 563
Proteins
Unit 1 VAL58 THR59 GLU60 VAL61 GLU62 GLN63 LYS64 LEU65 GLN66 ILE67 VAL68 HIS69 GLN70 THR71 LEU72 SER73 MET74 LEU75 ASP76 SER77 HIS78 GLY79 PHE80 GLU81 ASN82 ILE83 LEU84 GLN85 GLU86 MET87 LEU88 GLN89 SER90 ILE91 THR92 LEU93 LYS94 THR95 GLY96 GLU97 LEU98 LEU99 GLY100 ALA101 ASP102 ARG103 THR104 THR105 ILE106 PHE107 LEU108 LEU109 ASP110 GLU111 GLU112 LYS113 GLN114 GLU115 LEU116 TRP117 SER118 ILE119 VAL120 ALA121 ALA122 GLY123 GLU124 GLY125 ASP126 ARG127 SER128 LEU129 GLU130 ILE131 ARG132 ILE133 PRO134 ALA135 ASP136 LYS137 GLY138 ILE139 ALA140 GLY141 GLU142 VAL143 ALA144 THR145 PHE146 LYS147 GLN148 VAL149 VAL150 ASN151 ILE152 PRO153 PHE154 ASP155 PHE156 TYR157 HIS158 ASP159 PRO160 ARG161 SER162 ILE163 PHE164 ALA165 GLN166 LYS167 GLN168 GLU169 LYS170 ILE171 THR172 GLY173 TYR174 ARG175 THR176 TYR177 THR178 MET179 LEU180 ALA181 LEU182 PRO183 LEU184 LEU185 SER186 GLU187 GLN188 GLY189 ARG190 LEU191 VAL192 ALA193 VAL194 VAL195 GLN196 LEU197 LEU198 ASN199 LYS200 LEU201 LYS202 PRO203 TYR204 SER205 PRO206 PRO207 ASP208 ALA209 LEU210 LEU211 ALA212 GLU213 ARG214 ILE215 ASP216 ASN217 GLN218 GLY219 PHE220 THR221 SER222 ALA223 ASP224 GLU225 GLN226 LEU227 PHE228 GLN229 GLU230 PHE231 ALA232 PRO233 SER234 ILE235 ARG236 LEU237 ILE238 LEU239 GLU240 SER241 SER242 ARG243 SER244 PHE245 TYR246 ILE247 ALA248 THR249 GLN250 LYS251 GLN252 ARG253 ALA254 ALA255 ALA256 ALA257 MET258 MET259 LYS260 ALA261 VAL262 LYS263 SER264 LEU265 SER266 GLN267 SER268 SER269 LEU270 ASP271 LEU272 GLU273 ASP274 THR275 LEU276 LYS277 ARG278 VAL279 MET280 ASP281 GLU282 ALA283 LYS284 GLU285 LEU286 MET287 ASN288 ALA289 ASP290 ARG291 SER292 THR293 LEU294 TRP295 LEU296 ILE297 ASP298 ARG299 ASP300 ARG301 HIS302 GLU303 LEU304 TRP305 THR306 LYS307 ILE308 THR309 GLN310 ASP311 ASN312 GLY313 SER314 THR315 LYS316 GLU317 LEU318 ARG319 VAL320 PRO321 ILE322 GLY323 LYS324 GLY325 PHE326 ALA327 GLY328 ILE329 VAL330 ALA331 ALA332 SER333 GLY334 GLN335 LYS336 LEU337 ASN338 ILE339 PRO340 PHE341 ASP342 LEU343 TYR344 ASP345 HIS346 PRO347 ASP348 SER349 ALA350 THR351 ALA352 LYS353 GLN354 ILE355 ASP356 GLN357 GLN358 ASN359 GLY360 TYR361 ARG362 THR363 CYS364 SER365 LEU366 LEU367 CYS368 MET369 PRO370 VAL371 PHE372 ASN373 GLY374 ASP375 GLN376 GLU377 LEU378 ILE379 GLY380 VAL381 THR382 GLN383 LEU384 VAL385 ASN386 LYS387 LYS388 LYS389 THR390 GLY391 GLU392 PHE393 PRO394 PRO395 TYR396 ASN397 PRO398 GLU399 THR400 TRP401 PRO402 ILE403 ALA404 PRO405 GLU406 CYS407 PHE408 GLN409 ALA410 SER411 PHE412 ASP413 ARG414 ASN415 ASP416 GLU417 GLU418 PHE419 MET420 GLU421 ALA422 PHE423 ASN424 ILE425 GLN426 ALA427 GLY428 VAL429 ALA430 LEU431 GLN432 ASN433 ALA434 GLN435 LEU436 PHE437 ALA438 THR439 VAL440
Unit 2 VAL58 THR59 GLU60 VAL61 GLU62 GLN63 LYS64 LEU65 GLN66 ILE67 VAL68 HIS69 GLN70 THR71 LEU72 SER73 MET74 LEU75 ASP76 SER77 HIS78 GLY79 PHE80 GLU81 ASN82 ILE83 LEU84 GLN85 GLU86 MET87 LEU88 GLN89 SER90 ILE91 THR92 LEU93 LYS94 THR95 GLY96 GLU97 LEU98 LEU99 GLY100 ALA101 ASP102 ARG103 THR104 THR105 ILE106 PHE107 LEU108 LEU109 ASP110 GLU111 GLU112 LYS113 GLN114 GLU115 LEU116 TRP117 SER118 ILE119 VAL120 ALA121 ALA122 GLY123 SER128 LEU129 GLU130 ILE131 ARG132 ILE133 PRO134 ALA135 ASP136 LYS137 GLY138 ILE139 ALA140 GLY141 GLU142 VAL143 ALA144 THR145 PHE146 LYS147 GLN148 VAL149 VAL150 ASN151 ILE152 PRO153 PHE154 ASP155 PHE156 TYR157 HIS158 ASP159 PRO160 ARG161 SER162 ILE163 PHE164 ALA165 GLN166 LYS167 GLN168 GLU169 LYS170 ILE171 THR172 GLY173 TYR174 ARG175 THR176 TYR177 THR178 MET179 LEU180 ALA181 LEU182 PRO183 LEU184 LEU185 SER186 GLU187 GLN188 GLY189 ARG190 LEU191 VAL192 ALA193 VAL194 VAL195 GLN196 LEU197 LEU198 ASN199 LYS200 LEU201 LYS202 PRO203 TYR204 SER205 PRO206 PRO207 ASP208 ALA209 LEU210 LEU211 ALA212 GLU213 ARG214 ILE215 ASP216 ASN217 GLN218 GLY219 PHE220 THR221 SER222 ALA223 ASP224 GLU225 GLN226 LEU227 PHE228 GLN229 GLU230 PHE231 ALA232 PRO233 SER234 ILE235 ARG236 LEU237 ILE238 LEU239 GLU240 SER241 SER242 ARG243 SER244 PHE245 TYR246 ILE247 ALA248 THR249 GLN250 LYS251 GLN252 ARG253 ALA254 ALA255 ALA256 ALA257 MET258 MET259 LYS260 ALA261 VAL262 LYS263 SER264 LEU265 SER266 GLN267 SER268 SER269 LEU270 ASP271 LEU272 GLU273 ASP274 THR275 LEU276 LYS277 ARG278 VAL279 MET280 ASP281 GLU282 ALA283 LYS284 GLU285 LEU286 MET287 ASN288 ALA289 ASP290 ARG291 SER292 THR293 LEU294 TRP295 LEU296 ILE297 ASP298 ARG299 ASP300 ARG301 HIS302 GLU303 LEU304 TRP305 THR306 LYS307 ILE308 THR309 GLN310 ASP311 ASN312 GLY313 SER314 THR315 LYS316 GLU317 LEU318 ARG319 VAL320 PRO321 ILE322 GLY323 LYS324 GLY325 PHE326 ALA327 GLY328 ILE329 VAL330 ALA331 ALA332 SER333 GLY334 GLN335 LYS336 LEU337 ASN338 ILE339 PRO340 PHE341 ASP342 LEU343 TYR344 ASP345 HIS346 PRO347 ASP348 SER349 ALA350 THR351 ALA352 LYS353 GLN354 ILE355 ASP356 GLN357 GLN358 ASN359 GLY360 TYR361 ARG362 THR363 CYS364 SER365 LEU366 LEU367 CYS368 MET369 PRO370 VAL371 PHE372 ASN373 GLY374 ASP375 GLN376 GLU377 LEU378 ILE379 GLY380 VAL381 THR382 GLN383 LEU384 VAL385 ASN386 LYS387 LYS388 LYS389 THR390 GLY391 GLU392 PHE393 PRO394 PRO395 TYR396 ASN397 PRO398 GLU399 THR400 TRP401 PRO402 ILE403 ALA404 PRO405 GLU406 CYS407 PHE408 GLN409 ALA410 SER411 PHE412 ASP413 ARG414 ASN415 ASP416 GLU417 GLU418 PHE419 MET420 GLU421 ALA422 PHE423 ASN424 ILE425 GLN426 ALA427 GLY428 VAL429 ALA430 LEU431 GLN432 ASN433 ALA434 GLN435 LEU436 PHE437 ALA438 THR439 VAL440 LYS441
Ligands
Unit 3 CMP501 CMP502
Unit 4 CMP503 CMP504
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany