1YIR - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF A NICOTINATE PHOSPHORIBOSYLTRANSFERASE
• Keywords: STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, HYPOTHETI PROTEIN, NYSGXRC, T1804, PSI, NEW YORK SGX RESEARCH CENTER STRUCTURAL GENOMICS, TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1YIR	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2	A	390	3165	0
2	Protein	NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2	B	390	3165	0
3	Protein	NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2	C	390	3165	0
4	Protein	NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2	D	390	3165	0
5	Ligand	NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2	A	3	0	15
6	Ligand	NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2	B	3	0	15
7	Ligand	NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2	C	3	0	15
8	Ligand	NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2	D	3	0	15
9	Water			716	0	716
total				2288	12660	776

Proteins

Unit 1	LEU 3 ALA 4 GLU 5 SER 6 ALA 7 PHE 8 SER 9 GLU 10 ARG 11 ILE 12 VAL 13 GLN 14 ASN 15 LEU 16 LEU 17 ASP 18 THR 19 ASP 20 PHE 21 TYR 22 LYS 23 LEU 24 THR 25 MET 26 MET 27 GLN 28 ALA 29 VAL 30 LEU 31 HIS 32 ASN 33 TYR 34 PRO 35 ASN 36 ALA 37 GLU 38 VAL 39 GLU 40 TRP 41 GLU 42 PHE 43 ARG 44 CYS 45 ARG 46 ASN 47 GLN 48 GLU 49 ASP 50 LEU 51 ARG 52 LEU 53 TYR 54 LEU 55 PRO 56 ALA 57 ILE 58 ARG 59 GLU 60 GLN 61 LEU 62 GLU 63 TYR 64 LEU 65 ALA 66 GLY 67 LEU 68 ALA 69 ILE 70 SER 71 ASP 72 GLU 73 GLN 74 LEU 75 ALA 76 PHE 77 LEU 78 GLU 79 ARG 80 ILE 81 PRO 82 PHE 83 LEU 84 ALA 85 PRO 86 ASP 87 PHE 88 ILE 89 ARG 90 PHE 91 LEU 92 GLY 93 LEU 94 PHE 95 ARG 96 PHE 97 ASN 98 PRO 99 ARG 100 TYR 101 VAL 102 GLN 103 THR 104 GLY 105 ILE 106 GLU 107 ASN 108 ASP 109 GLU 110 PHE 111 PHE 112 LEU 113 ARG 114 LEU 115 LYS 116 GLY 117 PRO 118 TRP 119 LEU 120 HIS 121 VAL 122 ILE 123 LEU 124 PHE 125 GLU 126 VAL 127 PRO 128 LEU 129 LEU 130 ALA 131 MET 132 ILE 133 SER 134 GLU 135 VAL 136 ARG 137 ASN 138 ARG 139 ALA 140 ARG 141 TYR 142 PRO 143 ALA 144 ALA 145 THR 146 VAL 147 GLU 148 GLN 149 ALA 150 ARG 151 GLU 152 ARG 153 LEU 154 GLN 155 GLU 156 LYS 157 PHE 158 ASP 159 TRP 160 LEU 161 ARG 162 ARG 163 GLU 164 ALA 165 SER 166 ALA 167 GLU 168 GLU 169 LEU 170 ALA 171 GLY 172 PHE 173 LYS 174 MET 175 ALA 176 ASP 177 PHE 178 GLY 179 THR 180 ARG 181 ARG 182 ARG 183 PHE 184 SER 185 TYR 186 ARG 187 VAL 188 HIS 189 GLU 190 ALA 191 VAL 192 VAL 193 SER 194 GLY 195 LEU 196 LYS 197 GLU 198 ASP 199 PHE 200 PRO 201 GLY 202 CYS 203 PHE 204 VAL 205 GLY 206 THR 207 SER 208 ASN 209 VAL 210 HIS 211 LEU 212 ALA 213 ARG 214 LYS 215 LEU 216 ASP 217 LEU 218 LYS 219 PRO 220 LEU 221 GLY 222 THR 223 MET 224 ALA 225 HIS 226 GLU 227 TRP 228 LEU 229 MET 230 ALA 231 HIS 232 GLN 233 GLN 234 LEU 235 GLY 236 PRO 237 ARG 238 LEU 239 ILE 240 ASP 241 SER 242 GLN 243 SER 244 ALA 245 ALA 246 LEU 247 ASP 248 CYS 249 TRP 250 VAL 251 ARG 252 GLU 253 TYR 254 ARG 255 GLY 256 LEU 257 LEU 258 GLY 259 ILE 260 ALA 261 LEU 262 THR 263 ASP 264 CYS 265 ILE 266 THR 267 THR 268 ASP 269 ALA 270 PHE 271 LEU 272 ARG 273 ASP 274 PHE 275 ASP 276 LEU 277 TYR 278 PHE 279 ALA 280 LYS 281 LEU 282 PHE 283 ASP 284 GLY 285 LEU 286 ARG 287 HIS 288 ASP 289 SER 290 GLY 291 ASP 292 PRO 293 LEU 294 LEU 295 TRP 296 ALA 297 GLU 298 LYS 299 THR 300 ILE 301 ALA 302 HIS 303 TYR 304 LEU 305 LYS 306 LEU 307 GLY 308 ILE 309 ASP 310 PRO 311 LEU 312 THR 313 LYS 314 THR 315 LEU 316 VAL 317 PHE 318 SER 319 ASP 320 GLY 321 LEU 322 ASP 323 LEU 324 PRO 325 ARG 326 ALA 327 LEU 328 LYS 329 ILE 330 TYR 331 ARG 332 ALA 333 LEU 334 GLN 335 GLY 336 ARG 337 ILE 338 ASN 339 VAL 340 SER 341 PHE 342 GLY 343 ILE 344 GLY 345 THR 346 HIS 347 PHE 348 THR 349 CYS 350 ASP 351 LEU 352 PRO 353 GLY 354 VAL 355 GLU 356 PRO 357 MET 358 ASN 359 ILE 360 VAL 361 VAL 362 LYS 363 MET 364 SER 365 ALA 366 CYS 367 ASN 368 GLY 369 HIS 370 PRO 371 VAL 372 ALA 373 LYS 374 ILE 375 SER 376 ASP 377 THR 378 PRO 379 PRO 387 ASP 388 PHE 389 ILE 390 HIS 391 TYR 392 LEU 393 LYS 394 HIS 395 VAL 396 PHE 397 GLN 398 VAL 399
Unit 2	LEU 3 ALA 4 GLU 5 SER 6 ALA 7 PHE 8 SER 9 GLU 10 ARG 11 ILE 12 VAL 13 GLN 14 ASN 15 LEU 16 LEU 17 ASP 18 THR 19 ASP 20 PHE 21 TYR 22 LYS 23 LEU 24 THR 25 MET 26 MET 27 GLN 28 ALA 29 VAL 30 LEU 31 HIS 32 ASN 33 TYR 34 PRO 35 ASN 36 ALA 37 GLU 38 VAL 39 GLU 40 TRP 41 GLU 42 PHE 43 ARG 44 CYS 45 ARG 46 ASN 47 GLN 48 GLU 49 ASP 50 LEU 51 ARG 52 LEU 53 TYR 54 LEU 55 PRO 56 ALA 57 ILE 58 ARG 59 GLU 60 GLN 61 LEU 62 GLU 63 TYR 64 LEU 65 ALA 66 GLY 67 LEU 68 ALA 69 ILE 70 SER 71 ASP 72 GLU 73 GLN 74 LEU 75 ALA 76 PHE 77 LEU 78 GLU 79 ARG 80 ILE 81 PRO 82 PHE 83 LEU 84 ALA 85 PRO 86 ASP 87 PHE 88 ILE 89 ARG 90 PHE 91 LEU 92 GLY 93 LEU 94 PHE 95 ARG 96 PHE 97 ASN 98 PRO 99 ARG 100 TYR 101 VAL 102 GLN 103 THR 104 GLY 105 ILE 106 GLU 107 ASN 108 ASP 109 GLU 110 PHE 111 PHE 112 LEU 113 ARG 114 LEU 115 LYS 116 GLY 117 PRO 118 TRP 119 LEU 120 HIS 121 VAL 122 ILE 123 LEU 124 PHE 125 GLU 126 VAL 127 PRO 128 LEU 129 LEU 130 ALA 131 MET 132 ILE 133 SER 134 GLU 135 VAL 136 ARG 137 ASN 138 ARG 139 ALA 140 ARG 141 TYR 142 PRO 143 ALA 144 ALA 145 THR 146 VAL 147 GLU 148 GLN 149 ALA 150 ARG 151 GLU 152 ARG 153 LEU 154 GLN 155 GLU 156 LYS 157 PHE 158 ASP 159 TRP 160 LEU 161 ARG 162 ARG 163 GLU 164 ALA 165 SER 166 ALA 167 GLU 168 GLU 169 LEU 170 ALA 171 GLY 172 PHE 173 LYS 174 MET 175 ALA 176 ASP 177 PHE 178 GLY 179 THR 180 ARG 181 ARG 182 ARG 183 PHE 184 SER 185 TYR 186 ARG 187 VAL 188 HIS 189 GLU 190 ALA 191 VAL 192 VAL 193 SER 194 GLY 195 LEU 196 LYS 197 GLU 198 ASP 199 PHE 200 PRO 201 GLY 202 CYS 203 PHE 204 VAL 205 GLY 206 THR 207 SER 208 ASN 209 VAL 210 HIS 211 LEU 212 ALA 213 ARG 214 LYS 215 LEU 216 ASP 217 LEU 218 LYS 219 PRO 220 LEU 221 GLY 222 THR 223 MET 224 ALA 225 HIS 226 GLU 227 TRP 228 LEU 229 MET 230 ALA 231 HIS 232 GLN 233 GLN 234 LEU 235 GLY 236 PRO 237 ARG 238 LEU 239 ILE 240 ASP 241 SER 242 GLN 243 SER 244 ALA 245 ALA 246 LEU 247 ASP 248 CYS 249 TRP 250 VAL 251 ARG 252 GLU 253 TYR 254 ARG 255 GLY 256 LEU 257 LEU 258 GLY 259 ILE 260 ALA 261 LEU 262 THR 263 ASP 264 CYS 265 ILE 266 THR 267 THR 268 ASP 269 ALA 270 PHE 271 LEU 272 ARG 273 ASP 274 PHE 275 ASP 276 LEU 277 TYR 278 PHE 279 ALA 280 LYS 281 LEU 282 PHE 283 ASP 284 GLY 285 LEU 286 ARG 287 HIS 288 ASP 289 SER 290 GLY 291 ASP 292 PRO 293 LEU 294 LEU 295 TRP 296 ALA 297 GLU 298 LYS 299 THR 300 ILE 301 ALA 302 HIS 303 TYR 304 LEU 305 LYS 306 LEU 307 GLY 308 ILE 309 ASP 310 PRO 311 LEU 312 THR 313 LYS 314 THR 315 LEU 316 VAL 317 PHE 318 SER 319 ASP 320 GLY 321 LEU 322 ASP 323 LEU 324 PRO 325 ARG 326 ALA 327 LEU 328 LYS 329 ILE 330 TYR 331 ARG 332 ALA 333 LEU 334 GLN 335 GLY 336 ARG 337 ILE 338 ASN 339 VAL 340 SER 341 PHE 342 GLY 343 ILE 344 GLY 345 THR 346 HIS 347 PHE 348 THR 349 CYS 350 ASP 351 LEU 352 PRO 353 GLY 354 VAL 355 GLU 356 PRO 357 MET 358 ASN 359 ILE 360 VAL 361 VAL 362 LYS 363 MET 364 SER 365 ALA 366 CYS 367 ASN 368 GLY 369 HIS 370 PRO 371 VAL 372 ALA 373 LYS 374 ILE 375 SER 376 ASP 377 THR 378 PRO 379 PRO 387 ASP 388 PHE 389 ILE 390 HIS 391 TYR 392 LEU 393 LYS 394 HIS 395 VAL 396 PHE 397 GLN 398 VAL 399
Unit 3	LEU 3 ALA 4 GLU 5 SER 6 ALA 7 PHE 8 SER 9 GLU 10 ARG 11 ILE 12 VAL 13 GLN 14 ASN 15 LEU 16 LEU 17 ASP 18 THR 19 ASP 20 PHE 21 TYR 22 LYS 23 LEU 24 THR 25 MET 26 MET 27 GLN 28 ALA 29 VAL 30 LEU 31 HIS 32 ASN 33 TYR 34 PRO 35 ASN 36 ALA 37 GLU 38 VAL 39 GLU 40 TRP 41 GLU 42 PHE 43 ARG 44 CYS 45 ARG 46 ASN 47 GLN 48 GLU 49 ASP 50 LEU 51 ARG 52 LEU 53 TYR 54 LEU 55 PRO 56 ALA 57 ILE 58 ARG 59 GLU 60 GLN 61 LEU 62 GLU 63 TYR 64 LEU 65 ALA 66 GLY 67 LEU 68 ALA 69 ILE 70 SER 71 ASP 72 GLU 73 GLN 74 LEU 75 ALA 76 PHE 77 LEU 78 GLU 79 ARG 80 ILE 81 PRO 82 PHE 83 LEU 84 ALA 85 PRO 86 ASP 87 PHE 88 ILE 89 ARG 90 PHE 91 LEU 92 GLY 93 LEU 94 PHE 95 ARG 96 PHE 97 ASN 98 PRO 99 ARG 100 TYR 101 VAL 102 GLN 103 THR 104 GLY 105 ILE 106 GLU 107 ASN 108 ASP 109 GLU 110 PHE 111 PHE 112 LEU 113 ARG 114 LEU 115 LYS 116 GLY 117 PRO 118 TRP 119 LEU 120 HIS 121 VAL 122 ILE 123 LEU 124 PHE 125 GLU 126 VAL 127 PRO 128 LEU 129 LEU 130 ALA 131 MET 132 ILE 133 SER 134 GLU 135 VAL 136 ARG 137 ASN 138 ARG 139 ALA 140 ARG 141 TYR 142 PRO 143 ALA 144 ALA 145 THR 146 VAL 147 GLU 148 GLN 149 ALA 150 ARG 151 GLU 152 ARG 153 LEU 154 GLN 155 GLU 156 LYS 157 PHE 158 ASP 159 TRP 160 LEU 161 ARG 162 ARG 163 GLU 164 ALA 165 SER 166 ALA 167 GLU 168 GLU 169 LEU 170 ALA 171 GLY 172 PHE 173 LYS 174 MET 175 ALA 176 ASP 177 PHE 178 GLY 179 THR 180 ARG 181 ARG 182 ARG 183 PHE 184 SER 185 TYR 186 ARG 187 VAL 188 HIS 189 GLU 190 ALA 191 VAL 192 VAL 193 SER 194 GLY 195 LEU 196 LYS 197 GLU 198 ASP 199 PHE 200 PRO 201 GLY 202 CYS 203 PHE 204 VAL 205 GLY 206 THR 207 SER 208 ASN 209 VAL 210 HIS 211 LEU 212 ALA 213 ARG 214 LYS 215 LEU 216 ASP 217 LEU 218 LYS 219 PRO 220 LEU 221 GLY 222 THR 223 MET 224 ALA 225 HIS 226 GLU 227 TRP 228 LEU 229 MET 230 ALA 231 HIS 232 GLN 233 GLN 234 LEU 235 GLY 236 PRO 237 ARG 238 LEU 239 ILE 240 ASP 241 SER 242 GLN 243 SER 244 ALA 245 ALA 246 LEU 247 ASP 248 CYS 249 TRP 250 VAL 251 ARG 252 GLU 253 TYR 254 ARG 255 GLY 256 LEU 257 LEU 258 GLY 259 ILE 260 ALA 261 LEU 262 THR 263 ASP 264 CYS 265 ILE 266 THR 267 THR 268 ASP 269 ALA 270 PHE 271 LEU 272 ARG 273 ASP 274 PHE 275 ASP 276 LEU 277 TYR 278 PHE 279 ALA 280 LYS 281 LEU 282 PHE 283 ASP 284 GLY 285 LEU 286 ARG 287 HIS 288 ASP 289 SER 290 GLY 291 ASP 292 PRO 293 LEU 294 LEU 295 TRP 296 ALA 297 GLU 298 LYS 299 THR 300 ILE 301 ALA 302 HIS 303 TYR 304 LEU 305 LYS 306 LEU 307 GLY 308 ILE 309 ASP 310 PRO 311 LEU 312 THR 313 LYS 314 THR 315 LEU 316 VAL 317 PHE 318 SER 319 ASP 320 GLY 321 LEU 322 ASP 323 LEU 324 PRO 325 ARG 326 ALA 327 LEU 328 LYS 329 ILE 330 TYR 331 ARG 332 ALA 333 LEU 334 GLN 335 GLY 336 ARG 337 ILE 338 ASN 339 VAL 340 SER 341 PHE 342 GLY 343 ILE 344 GLY 345 THR 346 HIS 347 PHE 348 THR 349 CYS 350 ASP 351 LEU 352 PRO 353 GLY 354 VAL 355 GLU 356 PRO 357 MET 358 ASN 359 ILE 360 VAL 361 VAL 362 LYS 363 MET 364 SER 365 ALA 366 CYS 367 ASN 368 GLY 369 HIS 370 PRO 371 VAL 372 ALA 373 LYS 374 ILE 375 SER 376 ASP 377 THR 378 PRO 379 PRO 387 ASP 388 PHE 389 ILE 390 HIS 391 TYR 392 LEU 393 LYS 394 HIS 395 VAL 396 PHE 397 GLN 398 VAL 399
Unit 4	LEU 3 ALA 4 GLU 5 SER 6 ALA 7 PHE 8 SER 9 GLU 10 ARG 11 ILE 12 VAL 13 GLN 14 ASN 15 LEU 16 LEU 17 ASP 18 THR 19 ASP 20 PHE 21 TYR 22 LYS 23 LEU 24 THR 25 MET 26 MET 27 GLN 28 ALA 29 VAL 30 LEU 31 HIS 32 ASN 33 TYR 34 PRO 35 ASN 36 ALA 37 GLU 38 VAL 39 GLU 40 TRP 41 GLU 42 PHE 43 ARG 44 CYS 45 ARG 46 ASN 47 GLN 48 GLU 49 ASP 50 LEU 51 ARG 52 LEU 53 TYR 54 LEU 55 PRO 56 ALA 57 ILE 58 ARG 59 GLU 60 GLN 61 LEU 62 GLU 63 TYR 64 LEU 65 ALA 66 GLY 67 LEU 68 ALA 69 ILE 70 SER 71 ASP 72 GLU 73 GLN 74 LEU 75 ALA 76 PHE 77 LEU 78 GLU 79 ARG 80 ILE 81 PRO 82 PHE 83 LEU 84 ALA 85 PRO 86 ASP 87 PHE 88 ILE 89 ARG 90 PHE 91 LEU 92 GLY 93 LEU 94 PHE 95 ARG 96 PHE 97 ASN 98 PRO 99 ARG 100 TYR 101 VAL 102 GLN 103 THR 104 GLY 105 ILE 106 GLU 107 ASN 108 ASP 109 GLU 110 PHE 111 PHE 112 LEU 113 ARG 114 LEU 115 LYS 116 GLY 117 PRO 118 TRP 119 LEU 120 HIS 121 VAL 122 ILE 123 LEU 124 PHE 125 GLU 126 VAL 127 PRO 128 LEU 129 LEU 130 ALA 131 MET 132 ILE 133 SER 134 GLU 135 VAL 136 ARG 137 ASN 138 ARG 139 ALA 140 ARG 141 TYR 142 PRO 143 ALA 144 ALA 145 THR 146 VAL 147 GLU 148 GLN 149 ALA 150 ARG 151 GLU 152 ARG 153 LEU 154 GLN 155 GLU 156 LYS 157 PHE 158 ASP 159 TRP 160 LEU 161 ARG 162 ARG 163 GLU 164 ALA 165 SER 166 ALA 167 GLU 168 GLU 169 LEU 170 ALA 171 GLY 172 PHE 173 LYS 174 MET 175 ALA 176 ASP 177 PHE 178 GLY 179 THR 180 ARG 181 ARG 182 ARG 183 PHE 184 SER 185 TYR 186 ARG 187 VAL 188 HIS 189 GLU 190 ALA 191 VAL 192 VAL 193 SER 194 GLY 195 LEU 196 LYS 197 GLU 198 ASP 199 PHE 200 PRO 201 GLY 202 CYS 203 PHE 204 VAL 205 GLY 206 THR 207 SER 208 ASN 209 VAL 210 HIS 211 LEU 212 ALA 213 ARG 214 LYS 215 LEU 216 ASP 217 LEU 218 LYS 219 PRO 220 LEU 221 GLY 222 THR 223 MET 224 ALA 225 HIS 226 GLU 227 TRP 228 LEU 229 MET 230 ALA 231 HIS 232 GLN 233 GLN 234 LEU 235 GLY 236 PRO 237 ARG 238 LEU 239 ILE 240 ASP 241 SER 242 GLN 243 SER 244 ALA 245 ALA 246 LEU 247 ASP 248 CYS 249 TRP 250 VAL 251 ARG 252 GLU 253 TYR 254 ARG 255 GLY 256 LEU 257 LEU 258 GLY 259 ILE 260 ALA 261 LEU 262 THR 263 ASP 264 CYS 265 ILE 266 THR 267 THR 268 ASP 269 ALA 270 PHE 271 LEU 272 ARG 273 ASP 274 PHE 275 ASP 276 LEU 277 TYR 278 PHE 279 ALA 280 LYS 281 LEU 282 PHE 283 ASP 284 GLY 285 LEU 286 ARG 287 HIS 288 ASP 289 SER 290 GLY 291 ASP 292 PRO 293 LEU 294 LEU 295 TRP 296 ALA 297 GLU 298 LYS 299 THR 300 ILE 301 ALA 302 HIS 303 TYR 304 LEU 305 LYS 306 LEU 307 GLY 308 ILE 309 ASP 310 PRO 311 LEU 312 THR 313 LYS 314 THR 315 LEU 316 VAL 317 PHE 318 SER 319 ASP 320 GLY 321 LEU 322 ASP 323 LEU 324 PRO 325 ARG 326 ALA 327 LEU 328 LYS 329 ILE 330 TYR 331 ARG 332 ALA 333 LEU 334 GLN 335 GLY 336 ARG 337 ILE 338 ASN 339 VAL 340 SER 341 PHE 342 GLY 343 ILE 344 GLY 345 THR 346 HIS 347 PHE 348 THR 349 CYS 350 ASP 351 LEU 352 PRO 353 GLY 354 VAL 355 GLU 356 PRO 357 MET 358 ASN 359 ILE 360 VAL 361 VAL 362 LYS 363 MET 364 SER 365 ALA 366 CYS 367 ASN 368 GLY 369 HIS 370 PRO 371 VAL 372 ALA 373 LYS 374 ILE 375 SER 376 ASP 377 THR 378 PRO 379 PRO 387 ASP 388 PHE 389 ILE 390 HIS 391 TYR 392 LEU 393 LYS 394 HIS 395 VAL 396 PHE 397 GLN 398 VAL 399

Ligands

Unit 5	SO4 2000 SO4 2001 SO4 2002
Unit 6	SO4 3000 SO4 3001 SO4 3002
Unit 7	SO4 4001 SO4 4002 SO4 4003
Unit 8	SO4 5000 SO4 5001 SO4 5002