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Sequence, Chains, Asymmetric and Biological Units

Title T4DAM IN COMPLEX WITH ADOHCY AND 15-MER OLIGONUCLEOTIDE SHOW SPECIFIC AND SPECIFIC CONTACT
Keywords T4DAM, METHYLTRANSFERASE, DNA, PROTEIN-DNA COMPLEX, TRANSFER COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1YFJ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Other macromolecule    1 15 304 0
2  Other macromolecule    2 15 308 0
3  Other macromolecule    3 15 304 0
4  Other macromolecule    4 15 304 0
5  Other macromolecule    5 14 284 0
6  Other macromolecule    6 15 290 0
7  Other macromolecule    7 15 304 0
8  Other macromolecule    8 15 304 0
9  Other macromolecule    9 15 304 0
10  Other macromolecule    0 15 304 0
11  Protein   DNA ADENINE METHYLASE  A 259 2108 0
12  Protein   DNA ADENINE METHYLASE  B 259 2112 0
13  Protein   DNA ADENINE METHYLASE  C 259 2091 0
14  Protein   DNA ADENINE METHYLASE  D 254 1981 0
15  Protein   DNA ADENINE METHYLASE  E 243 1833 0
16  Protein   DNA ADENINE METHYLASE  F 243 1368 0
17  Ligand    1 1 0 1
18  Ligand    2 3 0 3
19  Ligand    4 1 0 1
20  Ligand    8 1 0 1
21  Ligand   DNA ADENINE METHYLASE  A 1 0 26
22  Ligand   DNA ADENINE METHYLASE  B 1 0 26
23  Ligand   DNA ADENINE METHYLASE  C 1 0 26
24  Ligand   DNA ADENINE METHYLASE  D 1 0 26
25  Ligand   DNA ADENINE METHYLASE  E 1 0 26
26  Ligand   DNA ADENINE METHYLASE  F 1 0 26
27 Water     343 0 343
total       2021 14503 505
Proteins
Unit 11 MET1 LEU2 GLY3 ALA4 ILE5 ALA6 TYR7 THR8 GLY9 ASN10 LYS11 GLN12 SER13 LEU14 LEU15 PRO16 GLU17 LEU18 LYS19 SER20 HIS21 PHE22 PRO23 LYS24 TYR25 ASN26 ARG27 PHE28 VAL29 ASP30 LEU31 PHE32 CYS33 GLY34 GLY35 LEU36 SER37 VAL38 SER39 LEU40 ASN41 VAL42 ASN43 GLY44 PRO45 VAL46 LEU47 ALA48 ASN49 ASP50 ILE51 GLN52 GLU53 PRO54 ILE55 ILE56 GLU57 MET58 TYR59 LYS60 ARG61 LEU62 ILE63 ASN64 VAL65 SER66 TRP67 ASP68 ASP69 VAL70 LEU71 LYS72 VAL73 ILE74 LYS75 GLN76 TYR77 LYS78 LEU79 SER80 LYS81 THR82 SER83 LYS84 GLU85 GLU86 PHE87 LEU88 LYS89 LEU90 ARG91 GLU92 ASP93 TYR94 ASN95 LYS96 THR97 ARG98 ASP99 PRO100 LEU101 LEU102 LEU103 TYR104 VAL105 LEU106 HIS107 PHE108 HIS109 GLY110 PHE111 SER112 ASN113 MET114 ILE115 ARG116 ILE117 ASN118 ASP119 LYS120 GLY121 ASN122 PHE123 THR124 THR125 PRO126 PHE127 GLY128 LYS129 ARG130 THR131 ILE132 ASN133 LYS134 ASN135 SER136 GLU137 LYS138 ARG139 PHE140 ASN141 HIS142 PHE143 LYS144 GLN145 ASN146 CYS147 ASP148 LYS149 ILE150 ILE151 PHE152 SER153 SER154 LEU155 HIS156 PHE157 LYS158 ASP159 VAL160 LYS161 ILE162 LEU163 ASP164 GLY165 ASP166 PHE167 VAL168 TYR169 VAL170 ASP171 PRO172 PRO173 TYR174 LEU175 ILE176 THR177 VAL178 ALA179 ASP180 TYR181 ASN182 LYS183 PHE184 TRP185 SER186 GLU187 ASP188 GLU189 GLU190 LYS191 ASP192 LEU193 LEU194 ASN195 LEU196 LEU197 ASP198 SER199 LEU200 ASN201 ASP202 ARG203 GLY204 ILE205 LYS206 PHE207 GLY208 LEU209 SER210 ASN211 VAL212 LEU213 GLU214 HIS215 HIS216 GLY217 LYS218 GLU219 ASN220 THR221 LEU222 LEU223 LYS224 GLU225 TRP226 SER227 LYS228 LYS229 TYR230 ASN231 VAL232 LYS233 HIS234 LEU235 ASN236 LYS237 LYS238 TYR239 VAL240 PHE241 ASN242 ILE243 TYR244 HIS245 SER246 LYS247 GLU248 LYS249 ASN250 GLY251 THR252 ASP253 GLU254 VAL255 TYR256 ILE257 PHE258 ASN259
Unit 12 MET1 LEU2 GLY3 ALA4 ILE5 ALA6 TYR7 THR8 GLY9 ASN10 LYS11 GLN12 SER13 LEU14 LEU15 PRO16 GLU17 LEU18 LYS19 SER20 HIS21 PHE22 PRO23 LYS24 TYR25 ASN26 ARG27 PHE28 VAL29 ASP30 LEU31 PHE32 CYS33 GLY34 GLY35 LEU36 SER37 VAL38 SER39 LEU40 ASN41 VAL42 ASN43 GLY44 PRO45 VAL46 LEU47 ALA48 ASN49 ASP50 ILE51 GLN52 GLU53 PRO54 ILE55 ILE56 GLU57 MET58 TYR59 LYS60 ARG61 LEU62 ILE63 ASN64 VAL65 SER66 TRP67 ASP68 ASP69 VAL70 LEU71 LYS72 VAL73 ILE74 LYS75 GLN76 TYR77 LYS78 LEU79 SER80 LYS81 THR82 SER83 LYS84 GLU85 GLU86 PHE87 LEU88 LYS89 LEU90 ARG91 GLU92 ASP93 TYR94 ASN95 LYS96 THR97 ARG98 ASP99 PRO100 LEU101 LEU102 LEU103 TYR104 VAL105 LEU106 HIS107 PHE108 HIS109 GLY110 PHE111 SER112 ASN113 MET114 ILE115 ARG116 ILE117 ASN118 ASP119 LYS120 GLY121 ASN122 PHE123 THR124 THR125 PRO126 PHE127 GLY128 LYS129 ARG130 THR131 ILE132 ASN133 LYS134 ASN135 SER136 GLU137 LYS138 ARG139 PHE140 ASN141 HIS142 PHE143 LYS144 GLN145 ASN146 CYS147 ASP148 LYS149 ILE150 ILE151 PHE152 SER153 SER154 LEU155 HIS156 PHE157 LYS158 ASP159 VAL160 LYS161 ILE162 LEU163 ASP164 GLY165 ASP166 PHE167 VAL168 TYR169 VAL170 ASP171 PRO172 PRO173 TYR174 LEU175 ILE176 THR177 VAL178 ALA179 ASP180 TYR181 ASN182 LYS183 PHE184 TRP185 SER186 GLU187 ASP188 GLU189 GLU190 LYS191 ASP192 LEU193 LEU194 ASN195 LEU196 LEU197 ASP198 SER199 LEU200 ASN201 ASP202 ARG203 GLY204 ILE205 LYS206 PHE207 GLY208 LEU209 SER210 ASN211 VAL212 LEU213 GLU214 HIS215 HIS216 GLY217 LYS218 GLU219 ASN220 THR221 LEU222 LEU223 LYS224 GLU225 TRP226 SER227 LYS228 LYS229 TYR230 ASN231 VAL232 LYS233 HIS234 LEU235 ASN236 LYS237 LYS238 TYR239 VAL240 PHE241 ASN242 ILE243 TYR244 HIS245 SER246 LYS247 GLU248 LYS249 ASN250 GLY251 THR252 ASP253 GLU254 VAL255 TYR256 ILE257 PHE258 ASN259
Unit 13 MET1 LEU2 GLY3 ALA4 ILE5 ALA6 TYR7 THR8 GLY9 ASN10 LYS11 GLN12 SER13 LEU14 LEU15 PRO16 GLU17 LEU18 LYS19 SER20 HIS21 PHE22 PRO23 LYS24 TYR25 ASN26 ARG27 PHE28 VAL29 ASP30 LEU31 PHE32 CYS33 GLY34 GLY35 LEU36 SER37 VAL38 SER39 LEU40 ASN41 VAL42 ASN43 GLY44 PRO45 VAL46 LEU47 ALA48 ASN49 ASP50 ILE51 GLN52 GLU53 PRO54 ILE55 ILE56 GLU57 MET58 TYR59 LYS60 ARG61 LEU62 ILE63 ASN64 VAL65 SER66 TRP67 ASP68 ASP69 VAL70 LEU71 LYS72 VAL73 ILE74 LYS75 GLN76 TYR77 LYS78 LEU79 SER80 LYS81 THR82 SER83 LYS84 GLU85 GLU86 PHE87 LEU88 LYS89 LEU90 ARG91 GLU92 ASP93 TYR94 ASN95 LYS96 THR97 ARG98 ASP99 PRO100 LEU101 LEU102 LEU103 TYR104 VAL105 LEU106 HIS107 PHE108 HIS109 GLY110 PHE111 SER112 ASN113 MET114 ILE115 ARG116 ILE117 ASN118 ASP119 LYS120 GLY121 ASN122 PHE123 THR124 THR125 PRO126 PHE127 GLY128 LYS129 ARG130 THR131 ILE132 ASN133 LYS134 ASN135 SER136 GLU137 LYS138 ARG139 PHE140 ASN141 HIS142 PHE143 LYS144 GLN145 ASN146 CYS147 ASP148 LYS149 ILE150 ILE151 PHE152 SER153 SER154 LEU155 HIS156 PHE157 LYS158 ASP159 VAL160 LYS161 ILE162 LEU163 ASP164 GLY165 ASP166 PHE167 VAL168 TYR169 VAL170 ASP171 PRO172 PRO173 TYR174 LEU175 ILE176 THR177 VAL178 ALA179 ASP180 TYR181 ASN182 LYS183 PHE184 TRP185 SER186 GLU187 ASP188 GLU189 GLU190 LYS191 ASP192 LEU193 LEU194 ASN195 LEU196 LEU197 ASP198 SER199 LEU200 ASN201 ASP202 ARG203 GLY204 ILE205 LYS206 PHE207 GLY208 LEU209 SER210 ASN211 VAL212 LEU213 GLU214 HIS215 HIS216 GLY217 LYS218 GLU219 ASN220 THR221 LEU222 LEU223 LYS224 GLU225 TRP226 SER227 LYS228 LYS229 TYR230 ASN231 VAL232 LYS233 HIS234 LEU235 ASN236 LYS237 LYS238 TYR239 VAL240 PHE241 ASN242 ILE243 TYR244 HIS245 SER246 LYS247 GLU248 LYS249 ASN250 GLY251 THR252 ASP253 GLU254 VAL255 TYR256 ILE257 PHE258 ASN259
Unit 14 MET1 LEU2 GLY3 ALA4 ILE5 ALA6 TYR7 THR8 GLY9 ASN10 LYS11 GLN12 SER13 LEU14 LEU15 PRO16 GLU17 LEU18 LYS19 SER20 HIS21 PHE22 PRO23 LYS24 TYR25 ASN26 ARG27 PHE28 VAL29 ASP30 LEU31 PHE32 CYS33 GLY34 GLY35 LEU36 SER37 VAL38 SER39 LEU40 ASN41 VAL42 ASN43 GLY44 PRO45 VAL46 LEU47 ALA48 ASN49 ASP50 ILE51 GLN52 GLU53 PRO54 ILE55 ILE56 GLU57 MET58 TYR59 LYS60 ARG61 LEU62 ILE63 ASN64 VAL65 SER66 TRP67 ASP68 ASP69 VAL70 LEU71 LYS72 VAL73 ILE74 LYS75 GLN76 TYR77 LYS78 LEU79 SER80 LYS81 THR82 SER83 LYS84 GLU85 GLU86 PHE87 LEU88 LYS89 LEU90 ARG91 GLU92 ASP93 TYR94 ASN95 LYS96 THR97 ARG98 ASP99 PRO100 LEU101 LEU102 LEU103 TYR104 VAL105 LEU106 HIS107 PHE108 HIS109 GLY110 PHE111 SER112 ASN113 MET114 ILE115 ARG116 ILE117 ASN118 ASP119 LYS120 GLY121 ASN122 PHE123 THR124 THR125 PRO126 PHE127 GLY128 LYS129 ARG130 THR131 ILE132 ASN133 LYS134 ASN135 SER136 GLU137 LYS138 ARG139 PHE140 ASN141 HIS142 PHE143 LYS144 GLN145 ASN146 CYS147 ASP148 LYS149 ILE150 ILE151 PHE152 SER153 SER154 LEU155 HIS156 PHE157 LYS158 ASP159 VAL160 LYS161 ILE162 LEU163 ASP164 GLY165 ASP166 PHE167 VAL168 TYR169 VAL170 ASP171 PRO172 PRO173 TYR174 LEU175 ILE176 THR177 VAL178 ALA179 ASP180 TYR181 ASN182 LYS183 PHE184 TRP185 SER186 GLU187 ASP188 GLU189 GLU190 LYS191 ASP192 LEU193 LEU194 ASN195 LEU196 LEU197 ASP198 SER199 LEU200 ASN201 ASP202 ARG203 GLY204 ILE205 LYS206 PHE207 GLY208 LEU209 SER210 ASN211 VAL212 LEU213 GLU214 HIS215 HIS216 GLY217 LYS218 GLU219 ASN220 THR221 LEU222 LEU223 LYS224 GLU225 TRP226 SER227 LYS228 LYS229 TYR230 ASN231 VAL232 LYS233 HIS234 LEU235 ASN236 LYS237 LYS238 TYR239 VAL240 PHE241 ASN242 ILE243 TYR244 ASN250 GLY251 THR252 ASP253 GLU254 VAL255 TYR256 ILE257 PHE258 ASN259
Unit 15 MET1 LEU2 GLY3 ALA4 ILE5 ALA6 TYR7 THR8 GLY9 ASN10 LYS11 GLN12 SER13 LEU14 LEU15 PRO16 GLU17 LEU18 LYS19 SER20 HIS21 PHE22 PRO23 LYS24 TYR25 ASN26 ARG27 PHE28 VAL29 ASP30 LEU31 PHE32 CYS33 GLY34 GLY35 LEU36 SER37 VAL38 SER39 LEU40 ASN41 VAL42 ASN43 GLY44 PRO45 VAL46 LEU47 ALA48 ASN49 ASP50 ILE51 GLN52 GLU53 PRO54 ILE55 ILE56 GLU57 MET58 TYR59 LYS60 ARG61 LEU62 ILE63 ASN64 VAL65 SER66 TRP67 ASP68 ASP69 VAL70 LEU71 LYS72 VAL73 ILE74 LYS75 GLN76 TYR77 LYS78 LEU79 SER80 LYS81 THR82 SER83 LYS84 GLU85 GLU86 PHE87 LEU88 LYS89 LEU90 ARG91 GLU92 ASP93 TYR94 ASN95 LYS96 THR97 ARG98 ASP99 PRO100 LEU101 LEU102 LEU103 TYR104 VAL105 LEU106 HIS107 PHE108 HIS109 GLY110 PHE111 SER112 ASN113 MET114 ILE115 ARG116 ILE117 ASN118 ASP119 LYS120 GLY121 ASN122 PHE123 THR124 THR125 PRO126 PHE127 GLY128 LYS129 ARG130 THR131 ILE132 ASN133 LYS134 ASN135 SER136 GLU137 LYS138 ARG139 PHE140 ASN141 HIS142 PHE143 LYS144 GLN145 ASN146 CYS147 ASP148 LYS149 ILE150 ILE151 PHE152 SER153 SER154 LEU155 HIS156 PHE157 LYS158 ASP159 VAL160 LYS161 ILE162 LEU163 ASP164 GLY165 ASP166 PHE167 VAL168 TYR169 VAL170 ASP171 PRO172 PRO173 TYR174 LEU175 ILE176 THR177 VAL178 ALA179 ASP180 TYR181 ASN182 LYS183 PHE184 TRP185 SER186 GLU187 ASP188 GLU189 GLU190 LYS191 ASP192 LEU193 LEU194 ASN195 LEU196 LEU197 ASP198 SER199 LEU200 ASN201 ASP202 ARG203 GLY204 ILE205 LYS206 PHE207 GLY208 LEU209 SER210 ASN211 VAL212 LEU213 GLU214 HIS215 HIS216 GLY217 LYS218 GLU219 ASN220 THR221 LEU222 LEU223 LYS224 GLU225 TRP226 SER227 LYS228 LYS229 TYR230 ASN231 VAL232 LYS233 HIS234 LEU235 THR252 ASP253 GLU254 VAL255 TYR256 ILE257 PHE258 ASN259
Unit 16 MET1 LEU2 GLY3 ALA4 ILE5 ALA6 TYR7 THR8 GLY9 ASN10 LYS11 GLN12 SER13 LEU14 LEU15 PRO16 GLU17 LEU18 LYS19 SER20 HIS21 PHE22 PRO23 LYS24 TYR25 ASN26 ARG27 PHE28 VAL29 ASP30 LEU31 PHE32 CYS33 GLY34 GLY35 LEU36 SER37 VAL38 SER39 LEU40 ASN41 VAL42 ASN43 GLY44 PRO45 VAL46 LEU47 ALA48 ASN49 ASP50 ILE51 GLN52 GLU53 PRO54 ILE55 ILE56 GLU57 MET58 TYR59 LYS60 ARG61 LEU62 ILE63 ASN64 VAL65 SER66 TRP67 ASP68 ASP69 VAL70 LEU71 LYS72 VAL73 ILE74 LYS75 GLN76 TYR77 LYS78 LEU79 SER80 LYS81 THR82 SER83 LYS84 GLU85 GLU86 PHE87 LEU88 LYS89 LEU90 ARG91 GLU92 ASP93 TYR94 ASN95 LYS96 THR97 ARG98 ASP99 PRO100 LEU101 LEU102 LEU103 TYR104 VAL105 LEU106 HIS107 PHE108 HIS109 GLY110 PHE111 SER112 ASN113 MET114 ILE115 ARG116 ILE117 ASN118 ASP119 LYS120 GLY121 ASN122 PHE123 THR124 THR125 PRO126 PHE127 GLY128 LYS129 ARG130 THR131 ILE132 ASN133 LYS134 ASN135 SER136 GLU137 LYS138 ARG139 PHE140 ASN141 HIS142 PHE143 LYS144 GLN145 ASN146 CYS147 ASP148 LYS149 ILE150 ILE151 PHE152 SER153 SER154 LEU155 HIS156 PHE157 LYS158 ASP159 VAL160 LYS161 ILE162 LEU163 ASP164 GLY165 ASP166 PHE167 VAL168 TYR169 VAL170 ASP171 PRO172 PRO173 TYR174 LEU175 ILE176 THR177 VAL178 ALA179 ASP180 TYR181 ASN182 LYS183 PHE184 TRP185 SER186 GLU187 ASP188 GLU189 GLU190 LYS191 ASP192 LEU193 LEU194 ASN195 LEU196 LEU197 ASP198 SER199 LEU200 ASN201 ASP202 ARG203 GLY204 ILE205 LYS206 PHE207 GLY208 LEU209 SER210 ASN211 VAL212 LEU213 GLU214 HIS215 HIS216 GLY217 LYS218 GLU219 ASN220 THR221 LEU222 LEU223 LYS224 GLU225 TRP226 SER227 LYS228 LYS229 TYR230 ASN231 VAL232 LYS233 HIS234 LEU235 THR252 ASP253 GLU254 VAL255 TYR256 ILE257 PHE258 ASN259
Other macromolecules
Unit 1 DT101 DC102 DA103 DC104 DA105 DG106 DG107 DA108 DT109 DC110 DC111 DT112 DG113 DT114 DG115
Unit 2 DT201 DC202 DA203 DC204 DA205 DG206 DG207 DA208 DT209 DC210 DC211 DT212 DG213 DT214 DG215
Unit 3 DT301 DC302 DA303 DC304 DA305 DG306 DG307 DA308 DT309 DC310 DC311 DT312 DG313 DT314 DG315
Unit 4 DT401 DC402 DA403 DC404 DA405 DG406 DG407 DA408 DT409 DC410 DC411 DT412 DG413 DT414 DG415
Unit 5 DC502 DA503 DC504 DA505 DG506 DG507 DA508 DT509 DC510 DC511 DT512 DG513 DT514 DG515
Unit 6 DT601 DC602 DA603 DC604 DA605 DG606 DG607 DA608 DT609 DC610 DC611 DT612 DG613 DT614 DG615
Unit 7 DT701 DC702 DA703 DC704 DA705 DG706 DG707 DA708 DT709 DC710 DC711 DT712 DG713 DT714 DG715
Unit 8 DT801 DC802 DA803 DC804 DA805 DG806 DG807 DA808 DT809 DC810 DC811 DT812 DG813 DT814 DG815
Unit 9 DT901 DC902 DA903 DC904 DA905 DG906 DG907 DA908 DT909 DC910 DC911 DT912 DG913 DT914 DG915
Unit 10 DT1001 DC1002 DA1003 DC1004 DA1005 DG1006 DG1007 DA1008 DT1009 DC1010 DC1011 DT1012 DG1013 DT1014 DG1015
Ligands
Unit 17 CL602
Unit 18 CA502 CL601 CL603
Unit 19 CA508
Unit 20 CL600
Unit 21 SAH401
Unit 22 SAH402
Unit 23 SAH403
Unit 24 SAH404
Unit 25 SAH405
Unit 26 SAH406
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany