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Sequence, Chains, Asymmetric and Biological Units

Title THREE-DIMENSIONAL STRUCTURE OF DNA SEQUENCE SPECIFICITY (S) A TYPE I RESTRICTION-MODIFICATION ENZYME AND ITS FUNCTIONAL IMPLICATIONS
Keywords TYPE I RESTRICTION MODIFICATION ENZYME, S-SUBUNIT, STRUCTURA GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, BERKELEY STRUC GENOMICS CENTER, BSGC, HYDROLASE REGULATOR
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1YF2     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 425 3412 0
2  Protein    B 425 3416 0
3 Water     329 0 329
total       1179 6828 329

Proteins
Unit 1 MET1 PHE2 TYR3 LYS4 GLU5 GLU6 ASN7 PHE8 LYS9 LYS10 THR11 GLU12 ILE13 GLY14 GLU15 ILE16 PRO17 GLU18 ASP19 TRP20 GLU21 ILE22 VAL23 GLU24 LEU25 LYS26 ASP27 VAL28 CYS29 LYS30 LYS31 ILE32 LYS33 ALA34 GLY35 GLY36 THR37 PRO38 LYS39 THR40 SER41 VAL42 GLU43 GLU44 TYR45 TYR46 LYS47 ASN48 GLY49 THR50 ILE51 PRO52 PHE53 VAL54 LYS55 ILE56 GLU57 ASP58 ILE59 THR60 ASN61 SER62 ASN63 LYS64 TYR65 LEU66 THR67 ASN68 THR69 LYS70 ILE71 LYS72 ILE73 THR74 GLU75 GLU76 GLY77 LEU78 ASN79 ASN80 SER81 ASN82 ALA83 TRP84 ILE85 VAL86 PRO87 LYS88 ASN89 SER90 VAL91 LEU92 PHE93 ALA94 MET95 TYR96 GLY97 SER98 ILE99 GLY100 GLU101 THR102 ALA103 ILE104 ASN105 LYS106 ILE107 GLU108 VAL109 ALA110 THR111 ASN112 GLN113 ALA114 ILE115 LEU116 GLY117 ILE118 ILE119 PRO120 LYS121 ASP122 ASN123 ILE124 LEU125 GLU126 SER127 GLU128 PHE129 LEU130 TYR131 TYR132 ILE133 LEU134 ALA135 LYS136 ASN137 LYS138 ASN139 TYR140 TYR141 SER142 LYS143 LEU144 GLY145 MET146 GLN147 THR148 THR149 GLN150 LYS151 ASN152 LEU153 ASN154 ALA155 GLN156 ILE157 VAL158 LYS159 SER160 PHE161 LYS162 ILE163 PRO164 LEU165 PRO166 PRO167 LEU168 GLU169 GLU170 GLN171 LYS172 GLN173 ILE174 ALA175 LYS176 ILE177 LEU178 THR179 LYS180 ILE181 ASP182 GLU183 GLY184 ILE185 GLU186 ILE187 ILE188 GLU189 LYS190 SER191 ILE192 ASN193 LYS194 LEU195 GLU196 ARG197 ILE198 LYS199 LYS200 GLY201 LEU202 MET203 HIS204 LYS205 LEU206 LEU207 THR208 LYS209 GLY210 ILE211 GLY212 HIS213 SER214 ARG215 PHE216 LYS217 LYS218 SER219 GLU220 ILE221 GLY222 GLU223 ILE224 PRO225 GLU226 ASP227 TRP228 GLU229 VAL230 PHE231 GLU232 ILE233 LYS234 ASP235 ILE236 PHE237 GLU238 VAL239 LYS240 THR241 GLY242 THR243 THR244 PRO245 SER246 THR247 LYS248 LYS249 SER250 GLU251 TYR252 TRP253 GLU254 ASN255 GLY256 GLU257 ILE258 ASN259 TRP260 ILE261 THR262 PRO263 LEU264 ASP265 LEU266 SER267 ARG268 LEU269 ASN270 GLU271 LYS272 ILE273 TYR274 ILE275 GLY276 SER277 SER278 GLU279 ARG280 LYS281 VAL282 THR283 LYS284 ILE285 ALA286 LEU287 GLU288 LYS289 CYS290 ASN291 LEU292 ASN293 LEU294 ILE295 PRO296 LYS297 GLY298 SER299 ILE300 ILE301 ILE302 SER303 THR304 ARG305 ALA306 PRO307 VAL308 GLY309 TYR310 VAL311 ALA312 VAL313 LEU314 THR315 VAL316 GLU317 SER318 THR319 PHE320 ASN321 GLN322 GLY323 CYS324 LYS325 GLY326 LEU327 PHE328 GLN329 LYS330 ASN331 ASN332 ASP333 SER334 VAL335 ASN336 THR337 GLU338 PHE339 TYR340 ALA341 TYR342 TYR343 LEU344 LYS345 PHE346 LYS347 LYS348 ASN349 LEU350 LEU351 GLU352 ASN353 LEU354 SER355 GLY356 GLY357 SER358 THR359 PHE360 LYS361 GLU362 LEU363 SER364 LYS365 SER366 MET367 LEU368 GLU369 ASN370 PHE371 LYS372 ILE373 PRO374 LEU375 PRO376 PRO377 LEU378 GLU379 GLU380 GLN381 LYS382 GLN383 ILE384 ALA385 LYS386 ILE387 LEU388 SER389 SER390 VAL391 ASP392 LYS393 SER394 ILE395 GLU396 LEU397 LYS398 LYS399 GLN400 LYS401 LYS402 GLU403 LYS404 LEU405 GLN406 ARG407 MET408 LYS409 LYS410 LYS411 ILE412 MET413 GLU414 LEU415 LEU416 LEU417 THR418 GLY419 LYS420 VAL421 ARG422 VAL423 LYS424 THR425
Unit 2 MET1 PHE2 TYR3 LYS4 GLU5 GLU6 ASN7 PHE8 LYS9 LYS10 THR11 GLU12 ILE13 GLY14 GLU15 ILE16 PRO17 GLU18 ASP19 TRP20 GLU21 ILE22 VAL23 GLU24 LEU25 LYS26 ASP27 VAL28 CYS29 LYS30 LYS31 ILE32 LYS33 ALA34 GLY35 GLY36 THR37 PRO38 LYS39 THR40 SER41 VAL42 GLU43 GLU44 TYR45 TYR46 LYS47 ASN48 GLY49 THR50 ILE51 PRO52 PHE53 VAL54 LYS55 ILE56 GLU57 ASP58 ILE59 THR60 ASN61 SER62 ASN63 LYS64 TYR65 LEU66 THR67 ASN68 THR69 LYS70 ILE71 LYS72 ILE73 THR74 GLU75 GLU76 GLY77 LEU78 ASN79 ASN80 SER81 ASN82 ALA83 TRP84 ILE85 VAL86 PRO87 LYS88 ASN89 SER90 VAL91 LEU92 PHE93 ALA94 MET95 TYR96 GLY97 SER98 ILE99 GLY100 GLU101 THR102 ALA103 ILE104 ASN105 LYS106 ILE107 GLU108 VAL109 ALA110 THR111 ASN112 GLN113 ALA114 ILE115 LEU116 GLY117 ILE118 ILE119 PRO120 LYS121 ASP122 ASN123 ILE124 LEU125 GLU126 SER127 GLU128 PHE129 LEU130 TYR131 TYR132 ILE133 LEU134 ALA135 LYS136 ASN137 LYS138 ASN139 TYR140 TYR141 SER142 LYS143 LEU144 GLY145 MET146 GLN147 THR148 THR149 GLN150 LYS151 ASN152 LEU153 ASN154 ALA155 GLN156 ILE157 VAL158 LYS159 SER160 PHE161 LYS162 ILE163 PRO164 LEU165 PRO166 PRO167 LEU168 GLU169 GLU170 GLN171 LYS172 GLN173 ILE174 ALA175 LYS176 ILE177 LEU178 THR179 LYS180 ILE181 ASP182 GLU183 GLY184 ILE185 GLU186 ILE187 ILE188 GLU189 LYS190 SER191 ILE192 ASN193 LYS194 LEU195 GLU196 ARG197 ILE198 LYS199 LYS200 GLY201 LEU202 MET203 HIS204 LYS205 LEU206 LEU207 THR208 LYS209 GLY210 ILE211 GLY212 HIS213 SER214 ARG215 PHE216 LYS217 LYS218 SER219 GLU220 ILE221 GLY222 GLU223 ILE224 PRO225 GLU226 ASP227 TRP228 GLU229 VAL230 PHE231 GLU232 ILE233 LYS234 ASP235 ILE236 PHE237 GLU238 VAL239 LYS240 THR241 GLY242 THR243 THR244 PRO245 SER246 THR247 LYS248 LYS249 SER250 GLU251 TYR252 TRP253 GLU254 ASN255 GLY256 GLU257 ILE258 ASN259 TRP260 ILE261 THR262 PRO263 LEU264 ASP265 LEU266 SER267 ARG268 LEU269 ASN270 GLU271 LYS272 ILE273 TYR274 ILE275 GLY276 SER277 SER278 GLU279 ARG280 LYS281 VAL282 THR283 LYS284 ILE285 ALA286 LEU287 GLU288 LYS289 CYS290 ASN291 LEU292 ASN293 LEU294 ILE295 PRO296 LYS297 GLY298 SER299 ILE300 ILE301 ILE302 SER303 THR304 ARG305 ALA306 PRO307 VAL308 GLY309 TYR310 VAL311 ALA312 VAL313 LEU314 THR315 VAL316 GLU317 SER318 THR319 PHE320 ASN321 GLN322 GLY323 CYS324 LYS325 GLY326 LEU327 PHE328 GLN329 LYS330 ASN331 ASN332 ASP333 SER334 VAL335 ASN336 THR337 GLU338 PHE339 TYR340 ALA341 TYR342 TYR343 LEU344 LYS345 PHE346 LYS347 LYS348 ASN349 LEU350 LEU351 GLU352 ASN353 LEU354 SER355 GLY356 GLY357 SER358 THR359 PHE360 LYS361 GLU362 LEU363 SER364 LYS365 SER366 MET367 LEU368 GLU369 ASN370 PHE371 LYS372 ILE373 PRO374 LEU375 PRO376 PRO377 LEU378 GLU379 GLU380 GLN381 LYS382 GLN383 ILE384 ALA385 LYS386 ILE387 LEU388 SER389 SER390 VAL391 ASP392 LYS393 SER394 ILE395 GLU396 LEU397 LYS398 LYS399 GLN400 LYS401 LYS402 GLU403 LYS404 LEU405 GLN406 ARG407 MET408 LYS409 LYS410 LYS411 ILE412 MET413 GLU414 LEU415 LEU416 LEU417 THR418 GLY419 LYS420 VAL421 ARG422 VAL423 LYS424 THR425

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany