1YED - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF A CATALYTIC ANTIBODY IGG2A FAB FRAGMENT (D2.4)
• Keywords: CATALYTIC ANTIBODY, TRANSITION STATE ANALOGUE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1YED	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	IGG1 FAB FRAGMENT (D.2.4)	L	219	1693	0
2	Protein	IGG1 FAB FRAGMENT (D.2.4)	A	219	1693	0
3	Protein	IGG1 FAB FRAGMENT (D.2.4)	H	226	1724	0
4	Protein	IGG1 FAB FRAGMENT (D.2.4)	B	226	1724	0
5	Ligand	IGG1 FAB FRAGMENT (D.2.4)	L	1	0	24
6	Ligand	IGG1 FAB FRAGMENT (D.2.4)	A	1	0	24
7	Water			3	0	4
total				895	6834	52

Proteins

Unit 1	ASP 1 ILE 2 VAL 3 MET 4 THR 5 GLN 6 SER 7 PRO 8 LEU 9 THR 10 LEU 11 SER 12 VAL 13 THR 14 ILE 15 GLY 16 GLN 17 PRO 18 ALA 19 SER 20 ILE 21 SER 22 CYS 23 LYS 24 SER 25 SER 26 GLN 27 SER 27A LEU 27B LEU 27C TYR 27D SER 27E ASN 28 GLY 29 LYS 30 THR 31 TYR 32 LEU 33 ASN 34 TRP 35 LEU 36 LEU 37 GLN 38 ARG 39 PRO 40 GLY 41 GLN 42 SER 43 PRO 44 LYS 45 ARG 46 LEU 47 ILE 48 TYR 49 LEU 50 VAL 51 SER 52 LYS 53 LEU 54 GLU 55 SER 56 GLY 57 VAL 58 PRO 59 ASP 60 ARG 61 PHE 62 THR 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 THR 72 LEU 73 LYS 74 ILE 75 SER 76 ARG 77 VAL 78 GLU 79 ALA 80 ALA 81 ASP 82 LEU 83 GLY 84 VAL 85 TYR 86 TYR 87 CYS 88 VAL 89 GLN 90 GLY 91 THR 92 HIS 93 PHE 94 PRO 95 TYR 96 THR 97 PHE 98 GLY 99 GLY 100 GLY 101 THR 102 LYS 103 LEU 104 GLU 105 ILE 106 LEU 107 ARG 111 ALA 112 ASP 113 ALA 114 ALA 115 PRO 116 THR 117 VAL 118 SER 119 ILE 120 PHE 121 PRO 122 PRO 123 SER 124 SER 125 GLU 126 GLN 127 LEU 128 THR 129 SER 130 GLY 131 GLY 132 ALA 133 SER 134 VAL 135 VAL 136 CYS 137 PHE 138 LEU 139 ASN 140 ASN 141 PHE 142 TYR 143 PRO 144 LYS 145 ASP 146 ILE 147 ASN 148 VAL 149 LYS 150 TRP 151 LYS 152 ILE 153 ASP 154 GLY 155 SER 156 GLU 157 ARG 158 GLN 159 ASN 160 GLY 161 VAL 162 LEU 163 ASN 164 SER 165 TRP 166 THR 167 ASP 168 GLN 169 ASP 170 SER 171 LYS 172 ASP 173 SER 174 THR 175 TYR 176 SER 177 MET 178 SER 179 SER 180 THR 181 LEU 182 THR 183 LEU 184 THR 185 LYS 186 ASP 187 GLU 188 TYR 189 GLU 190 ARG 191 HIS 192 ASN 193 SER 194 TYR 195 THR 196 CYS 197 GLU 198 ALA 199 THR 200 HIS 201 LYS 202 THR 203 SER 204 THR 205 SER 206 PRO 207 ILE 208 VAL 209 LYS 210 SER 211 PHE 212 ASN 213 ARG 214 ASN 220 GLU 221 CYS 222
Unit 2	ASP 1 ILE 2 VAL 3 MET 4 THR 5 GLN 6 SER 7 PRO 8 LEU 9 THR 10 LEU 11 SER 12 VAL 13 THR 14 ILE 15 GLY 16 GLN 17 PRO 18 ALA 19 SER 20 ILE 21 SER 22 CYS 23 LYS 24 SER 25 SER 26 GLN 27 SER 27A LEU 27B LEU 27C TYR 27D SER 27E ASN 28 GLY 29 LYS 30 THR 31 TYR 32 LEU 33 ASN 34 TRP 35 LEU 36 LEU 37 GLN 38 ARG 39 PRO 40 GLY 41 GLN 42 SER 43 PRO 44 LYS 45 ARG 46 LEU 47 ILE 48 TYR 49 LEU 50 VAL 51 SER 52 LYS 53 LEU 54 GLU 55 SER 56 GLY 57 VAL 58 PRO 59 ASP 60 ARG 61 PHE 62 THR 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 THR 72 LEU 73 LYS 74 ILE 75 SER 76 ARG 77 VAL 78 GLU 79 ALA 80 ALA 81 ASP 82 LEU 83 GLY 84 VAL 85 TYR 86 TYR 87 CYS 88 VAL 89 GLN 90 GLY 91 THR 92 HIS 93 PHE 94 PRO 95 TYR 96 THR 97 PHE 98 GLY 99 GLY 100 GLY 101 THR 102 LYS 103 LEU 104 GLU 105 ILE 106 LEU 107 ARG 111 ALA 112 ASP 113 ALA 114 ALA 115 PRO 116 THR 117 VAL 118 SER 119 ILE 120 PHE 121 PRO 122 PRO 123 SER 124 SER 125 GLU 126 GLN 127 LEU 128 THR 129 SER 130 GLY 131 GLY 132 ALA 133 SER 134 VAL 135 VAL 136 CYS 137 PHE 138 LEU 139 ASN 140 ASN 141 PHE 142 TYR 143 PRO 144 LYS 145 ASP 146 ILE 147 ASN 148 VAL 149 LYS 150 TRP 151 LYS 152 ILE 153 ASP 154 GLY 155 SER 156 GLU 157 ARG 158 GLN 159 ASN 160 GLY 161 VAL 162 LEU 163 ASN 164 SER 165 TRP 166 THR 167 ASP 168 GLN 169 ASP 170 SER 171 LYS 172 ASP 173 SER 174 THR 175 TYR 176 SER 177 MET 178 SER 179 SER 180 THR 181 LEU 182 THR 183 LEU 184 THR 185 LYS 186 ASP 187 GLU 188 TYR 189 GLU 190 ARG 191 HIS 192 ASN 193 SER 194 TYR 195 THR 196 CYS 197 GLU 198 ALA 199 THR 200 HIS 201 LYS 202 THR 203 SER 204 THR 205 SER 206 PRO 207 ILE 208 VAL 209 LYS 210 SER 211 PHE 212 ASN 213 ARG 214 ASN 220 GLU 221 CYS 222
Unit 3	ALA 1 VAL 2 LYS 3 LEU 4 GLN 5 GLN 6 SER 7 GLY 8 PRO 9 GLU 10 LEU 11 VAL 12 ARG 13 PRO 14 GLY 15 THR 16 SER 17 VAL 18 LYS 19 LEU 20 SER 21 CYS 22 LYS 23 THR 24 SER 25 GLY 26 TYR 27 ILE 28 PHE 29 THR 30 SER 31 TYR 32 TRP 33 ILE 34 HIS 35 TRP 36 LEU 37 LYS 38 GLN 39 SER 40 SER 41 GLY 42 GLN 43 GLY 44 LEU 45 GLU 46 TRP 47 ILE 48 ALA 49 ARG 50 ILE 51 TYR 52 PRO 52A GLY 53 THR 54 GLY 55 GLY 56 THR 57 TYR 58 TYR 59 ASN 60 GLU 61 LYS 62 PHE 63 LYS 64 GLY 65 LYS 66 ALA 67 THR 68 LEU 69 THR 70 ALA 71 ASP 72 LYS 73 SER 74 SER 75 SER 76 THR 77 ALA 78 TYR 79 MET 80 GLN 81 LEU 82 SER 82A SER 82B LEU 82C LYS 83 SER 84 GLU 85 ASP 86 SER 87 ALA 88 VAL 89 TYR 90 PHE 91 CYS 92 THR 93 ARG 94 TRP 95 GLY 96 PHE 97 THR 98 THR 99 VAL 100 ARG 100A GLU 100B ASN 100C TYR 100D TYR 100E ALA 100F MET 100G ASP 101 TYR 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 116 LYS 117 THR 118 THR 119 PRO 120 PRO 121 SER 122 VAL 123 TYR 124 PRO 125 LEU 126 ALA 127 PRO 128 GLY 129 SER 130 ALA 131 ALA 132 GLN 133 THR 134 ASN 135 SER 136 MET 137 VAL 138 THR 139 LEU 140 GLY 141 CYS 142 LEU 143 VAL 144 LYS 145 GLY 146 TYR 147 PHE 148 PRO 149 GLU 150 PRO 151 VAL 152 THR 153 VAL 154 THR 155 TRP 156 ASN 157 SER 158 GLY 159 SER 160 LEU 161 SER 162 SER 163 GLY 164 VAL 165 HIS 166 THR 167 PHE 168 PRO 169 ALA 170 VAL 171 LEU 172 GLN 173 SER 174 ASP 175 LEU 176 TYR 177 THR 178 LEU 179 SER 180 SER 181 SER 182 VAL 183 THR 184 VAL 185 PRO 186 SER 187 SER 188 PRO 189 ARG 190 PRO 191 SER 192 GLU 193 THR 194 VAL 195 THR 196 CYS 197 ASN 198 VAL 199 ALA 200 HIS 201 PRO 202 ALA 203 SER 204 SER 205 THR 206 LYS 207 VAL 208 ASP 209 LYS 210 LYS 211 ILE 212 VAL 213 PRO 214 ARG 215 ASP 216 CYS 217
Unit 4	ALA 1 VAL 2 LYS 3 LEU 4 GLN 5 GLN 6 SER 7 GLY 8 PRO 9 GLU 10 LEU 11 VAL 12 ARG 13 PRO 14 GLY 15 THR 16 SER 17 VAL 18 LYS 19 LEU 20 SER 21 CYS 22 LYS 23 THR 24 SER 25 GLY 26 TYR 27 ILE 28 PHE 29 THR 30 SER 31 TYR 32 TRP 33 ILE 34 HIS 35 TRP 36 LEU 37 LYS 38 GLN 39 SER 40 SER 41 GLY 42 GLN 43 GLY 44 LEU 45 GLU 46 TRP 47 ILE 48 ALA 49 ARG 50 ILE 51 TYR 52 PRO 52A GLY 53 THR 54 GLY 55 GLY 56 THR 57 TYR 58 TYR 59 ASN 60 GLU 61 LYS 62 PHE 63 LYS 64 GLY 65 LYS 66 ALA 67 THR 68 LEU 69 THR 70 ALA 71 ASP 72 LYS 73 SER 74 SER 75 SER 76 THR 77 ALA 78 TYR 79 MET 80 GLN 81 LEU 82 SER 82A SER 82B LEU 82C LYS 83 SER 84 GLU 85 ASP 86 SER 87 ALA 88 VAL 89 TYR 90 PHE 91 CYS 92 THR 93 ARG 94 TRP 95 GLY 96 PHE 97 THR 98 THR 99 VAL 100 ARG 100A GLU 100B ASN 100C TYR 100D TYR 100E ALA 100F MET 100G ASP 101 TYR 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 116 LYS 117 THR 118 THR 119 PRO 120 PRO 121 SER 122 VAL 123 TYR 124 PRO 125 LEU 126 ALA 127 PRO 128 GLY 129 SER 130 ALA 131 ALA 132 GLN 133 THR 134 ASN 135 SER 136 MET 137 VAL 138 THR 139 LEU 140 GLY 141 CYS 142 LEU 143 VAL 144 LYS 145 GLY 146 TYR 147 PHE 148 PRO 149 GLU 150 PRO 151 VAL 152 THR 153 VAL 154 THR 155 TRP 156 ASN 157 SER 158 GLY 159 SER 160 LEU 161 SER 162 SER 163 GLY 164 VAL 165 HIS 166 THR 167 PHE 168 PRO 169 ALA 170 VAL 171 LEU 172 GLN 173 SER 174 ASP 175 LEU 176 TYR 177 THR 178 LEU 179 SER 180 SER 181 SER 182 VAL 183 THR 184 VAL 185 PRO 186 SER 187 SER 188 PRO 189 ARG 190 PRO 191 SER 192 GLU 193 THR 194 VAL 195 THR 196 CYS 197 ASN 198 VAL 199 ALA 200 HIS 201 PRO 202 ALA 203 SER 204 SER 205 THR 206 LYS 207 VAL 208 ASP 209 LYS 210 LYS 211 ILE 212 VAL 213 PRO 214 ARG 215 ASP 216 CYS 217

Ligands

Unit 5	PNB 551
Unit 6	PNB 552