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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE BACILLIS SUBTILIS HMG-COA LYASE, NO STRUCTURAL GENOMICS TARGET SR181.
Keywords TIM-BARREL PROTEIN, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCT INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG,
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1YDO     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HMG-COA LYASE  A 298 2232 56
2  Protein   HMG-COA LYASE  B 298 2232 56
3  Protein   HMG-COA LYASE  C 298 2232 56
4  Protein   HMG-COA LYASE  D 298 2232 56
5  Ligand   HMG-COA LYASE  A 1 0 1
6  Ligand   HMG-COA LYASE  B 1 0 1
7  Ligand   HMG-COA LYASE  C 1 0 1
8  Ligand   HMG-COA LYASE  D 1 0 1
9 Water     404 0 404
total       1600 8928 632
Proteins
Unit 1 MSE1 PRO2 TYR3 PRO4 LYS5 LYS6 VAL7 THR8 ILE9 LYS10 GLU11 VAL12 GLY13 PRO14 ARG15 ASP16 GLY17 LEU18 GLN19 ASN20 GLU21 PRO22 VAL23 TRP24 ILE25 ALA26 THR27 GLU28 ASP29 LYS30 ILE31 THR32 TRP33 ILE34 ASN35 GLN36 LEU37 SER38 ARG39 THR40 GLY41 LEU42 SER43 TYR44 ILE45 GLU46 ILE47 THR48 SER49 PHE50 VAL51 HIS52 PRO53 LYS54 TRP55 ILE56 PRO57 ALA58 LEU59 ARG60 ASP61 ALA62 ILE63 ASP64 VAL65 ALA66 LYS67 GLY68 ILE69 ASP70 ARG71 GLU72 LYS73 GLY74 VAL75 THR76 TYR77 ALA78 ALA79 LEU80 VAL81 PRO82 ASN83 GLN84 ARG85 GLY86 LEU87 GLU88 ASN89 ALA90 LEU91 GLU92 GLY93 GLY94 ILE95 ASN96 GLU97 ALA98 CYS99 VAL100 PHE101 MSE102 SER103 ALA104 SER105 GLU106 THR107 HIS108 ASN109 ARG110 LYS111 ASN112 ILE113 ASN114 LYS115 SER116 THR117 SER118 GLU119 SER120 LEU121 HIS122 ILE123 LEU124 LYS125 GLN126 VAL127 ASN128 ASN129 ASP130 ALA131 GLN132 LYS133 ALA134 ASN135 LEU136 THR137 THR138 ARG139 ALA140 TYR141 LEU142 SER143 THR144 VAL145 PHE146 GLY147 CYS148 PRO149 TYR150 GLU151 LYS152 ASP153 VAL154 PRO155 ILE156 GLU157 GLN158 VAL159 ILE160 ARG161 LEU162 SER163 GLU164 ALA165 LEU166 PHE167 GLU168 PHE169 GLY170 ILE171 SER172 GLU173 LEU174 SER175 LEU176 GLY177 ASP178 THR179 ILE180 GLY181 ALA182 ALA183 ASN184 PRO185 ALA186 GLN187 VAL188 GLU189 THR190 VAL191 LEU192 GLU193 ALA194 LEU195 LEU196 ALA197 ARG198 PHE199 PRO200 ALA201 ASN202 GLN203 ILE204 ALA205 LEU206 HIS207 PHE208 HIS209 ASP210 THR211 ARG212 GLY213 THR214 ALA215 LEU216 ALA217 ASN218 MSE219 VAL220 THR221 ALA222 LEU223 GLN224 MSE225 GLY226 ILE227 THR228 VAL229 PHE230 ASP231 GLY232 SER233 ALA234 GLY235 GLY236 LEU237 GLY238 GLY239 CYS240 PRO241 TYR242 ALA243 PRO244 GLY245 SER246 SER247 GLY248 ASN249 ALA250 ALA251 THR252 GLU253 ASP254 ILE255 VAL256 TYR257 MSE258 LEU259 GLU260 GLN261 MSE262 ASP263 ILE264 LYS265 THR266 ASN267 VAL268 LYS269 LEU270 GLU271 LYS272 LEU273 LEU274 SER275 ALA276 ALA277 LYS278 TRP279 ILE280 GLU281 GLU282 LYS283 MSE284 GLY285 LYS286 PRO287 LEU288 PRO289 SER290 ARG291 ASN292 LEU293 GLN294 VAL295 PHE296 LYS297 SER298
Unit 2 MSE1 PRO2 TYR3 PRO4 LYS5 LYS6 VAL7 THR8 ILE9 LYS10 GLU11 VAL12 GLY13 PRO14 ARG15 ASP16 GLY17 LEU18 GLN19 ASN20 GLU21 PRO22 VAL23 TRP24 ILE25 ALA26 THR27 GLU28 ASP29 LYS30 ILE31 THR32 TRP33 ILE34 ASN35 GLN36 LEU37 SER38 ARG39 THR40 GLY41 LEU42 SER43 TYR44 ILE45 GLU46 ILE47 THR48 SER49 PHE50 VAL51 HIS52 PRO53 LYS54 TRP55 ILE56 PRO57 ALA58 LEU59 ARG60 ASP61 ALA62 ILE63 ASP64 VAL65 ALA66 LYS67 GLY68 ILE69 ASP70 ARG71 GLU72 LYS73 GLY74 VAL75 THR76 TYR77 ALA78 ALA79 LEU80 VAL81 PRO82 ASN83 GLN84 ARG85 GLY86 LEU87 GLU88 ASN89 ALA90 LEU91 GLU92 GLY93 GLY94 ILE95 ASN96 GLU97 ALA98 CYS99 VAL100 PHE101 MSE102 SER103 ALA104 SER105 GLU106 THR107 HIS108 ASN109 ARG110 LYS111 ASN112 ILE113 ASN114 LYS115 SER116 THR117 SER118 GLU119 SER120 LEU121 HIS122 ILE123 LEU124 LYS125 GLN126 VAL127 ASN128 ASN129 ASP130 ALA131 GLN132 LYS133 ALA134 ASN135 LEU136 THR137 THR138 ARG139 ALA140 TYR141 LEU142 SER143 THR144 VAL145 PHE146 GLY147 CYS148 PRO149 TYR150 GLU151 LYS152 ASP153 VAL154 PRO155 ILE156 GLU157 GLN158 VAL159 ILE160 ARG161 LEU162 SER163 GLU164 ALA165 LEU166 PHE167 GLU168 PHE169 GLY170 ILE171 SER172 GLU173 LEU174 SER175 LEU176 GLY177 ASP178 THR179 ILE180 GLY181 ALA182 ALA183 ASN184 PRO185 ALA186 GLN187 VAL188 GLU189 THR190 VAL191 LEU192 GLU193 ALA194 LEU195 LEU196 ALA197 ARG198 PHE199 PRO200 ALA201 ASN202 GLN203 ILE204 ALA205 LEU206 HIS207 PHE208 HIS209 ASP210 THR211 ARG212 GLY213 THR214 ALA215 LEU216 ALA217 ASN218 MSE219 VAL220 THR221 ALA222 LEU223 GLN224 MSE225 GLY226 ILE227 THR228 VAL229 PHE230 ASP231 GLY232 SER233 ALA234 GLY235 GLY236 LEU237 GLY238 GLY239 CYS240 PRO241 TYR242 ALA243 PRO244 GLY245 SER246 SER247 GLY248 ASN249 ALA250 ALA251 THR252 GLU253 ASP254 ILE255 VAL256 TYR257 MSE258 LEU259 GLU260 GLN261 MSE262 ASP263 ILE264 LYS265 THR266 ASN267 VAL268 LYS269 LEU270 GLU271 LYS272 LEU273 LEU274 SER275 ALA276 ALA277 LYS278 TRP279 ILE280 GLU281 GLU282 LYS283 MSE284 GLY285 LYS286 PRO287 LEU288 PRO289 SER290 ARG291 ASN292 LEU293 GLN294 VAL295 PHE296 LYS297 SER298
Unit 3 MSE1 PRO2 TYR3 PRO4 LYS5 LYS6 VAL7 THR8 ILE9 LYS10 GLU11 VAL12 GLY13 PRO14 ARG15 ASP16 GLY17 LEU18 GLN19 ASN20 GLU21 PRO22 VAL23 TRP24 ILE25 ALA26 THR27 GLU28 ASP29 LYS30 ILE31 THR32 TRP33 ILE34 ASN35 GLN36 LEU37 SER38 ARG39 THR40 GLY41 LEU42 SER43 TYR44 ILE45 GLU46 ILE47 THR48 SER49 PHE50 VAL51 HIS52 PRO53 LYS54 TRP55 ILE56 PRO57 ALA58 LEU59 ARG60 ASP61 ALA62 ILE63 ASP64 VAL65 ALA66 LYS67 GLY68 ILE69 ASP70 ARG71 GLU72 LYS73 GLY74 VAL75 THR76 TYR77 ALA78 ALA79 LEU80 VAL81 PRO82 ASN83 GLN84 ARG85 GLY86 LEU87 GLU88 ASN89 ALA90 LEU91 GLU92 GLY93 GLY94 ILE95 ASN96 GLU97 ALA98 CYS99 VAL100 PHE101 MSE102 SER103 ALA104 SER105 GLU106 THR107 HIS108 ASN109 ARG110 LYS111 ASN112 ILE113 ASN114 LYS115 SER116 THR117 SER118 GLU119 SER120 LEU121 HIS122 ILE123 LEU124 LYS125 GLN126 VAL127 ASN128 ASN129 ASP130 ALA131 GLN132 LYS133 ALA134 ASN135 LEU136 THR137 THR138 ARG139 ALA140 TYR141 LEU142 SER143 THR144 VAL145 PHE146 GLY147 CYS148 PRO149 TYR150 GLU151 LYS152 ASP153 VAL154 PRO155 ILE156 GLU157 GLN158 VAL159 ILE160 ARG161 LEU162 SER163 GLU164 ALA165 LEU166 PHE167 GLU168 PHE169 GLY170 ILE171 SER172 GLU173 LEU174 SER175 LEU176 GLY177 ASP178 THR179 ILE180 GLY181 ALA182 ALA183 ASN184 PRO185 ALA186 GLN187 VAL188 GLU189 THR190 VAL191 LEU192 GLU193 ALA194 LEU195 LEU196 ALA197 ARG198 PHE199 PRO200 ALA201 ASN202 GLN203 ILE204 ALA205 LEU206 HIS207 PHE208 HIS209 ASP210 THR211 ARG212 GLY213 THR214 ALA215 LEU216 ALA217 ASN218 MSE219 VAL220 THR221 ALA222 LEU223 GLN224 MSE225 GLY226 ILE227 THR228 VAL229 PHE230 ASP231 GLY232 SER233 ALA234 GLY235 GLY236 LEU237 GLY238 GLY239 CYS240 PRO241 TYR242 ALA243 PRO244 GLY245 SER246 SER247 GLY248 ASN249 ALA250 ALA251 THR252 GLU253 ASP254 ILE255 VAL256 TYR257 MSE258 LEU259 GLU260 GLN261 MSE262 ASP263 ILE264 LYS265 THR266 ASN267 VAL268 LYS269 LEU270 GLU271 LYS272 LEU273 LEU274 SER275 ALA276 ALA277 LYS278 TRP279 ILE280 GLU281 GLU282 LYS283 MSE284 GLY285 LYS286 PRO287 LEU288 PRO289 SER290 ARG291 ASN292 LEU293 GLN294 VAL295 PHE296 LYS297 SER298
Unit 4 MSE1 PRO2 TYR3 PRO4 LYS5 LYS6 VAL7 THR8 ILE9 LYS10 GLU11 VAL12 GLY13 PRO14 ARG15 ASP16 GLY17 LEU18 GLN19 ASN20 GLU21 PRO22 VAL23 TRP24 ILE25 ALA26 THR27 GLU28 ASP29 LYS30 ILE31 THR32 TRP33 ILE34 ASN35 GLN36 LEU37 SER38 ARG39 THR40 GLY41 LEU42 SER43 TYR44 ILE45 GLU46 ILE47 THR48 SER49 PHE50 VAL51 HIS52 PRO53 LYS54 TRP55 ILE56 PRO57 ALA58 LEU59 ARG60 ASP61 ALA62 ILE63 ASP64 VAL65 ALA66 LYS67 GLY68 ILE69 ASP70 ARG71 GLU72 LYS73 GLY74 VAL75 THR76 TYR77 ALA78 ALA79 LEU80 VAL81 PRO82 ASN83 GLN84 ARG85 GLY86 LEU87 GLU88 ASN89 ALA90 LEU91 GLU92 GLY93 GLY94 ILE95 ASN96 GLU97 ALA98 CYS99 VAL100 PHE101 MSE102 SER103 ALA104 SER105 GLU106 THR107 HIS108 ASN109 ARG110 LYS111 ASN112 ILE113 ASN114 LYS115 SER116 THR117 SER118 GLU119 SER120 LEU121 HIS122 ILE123 LEU124 LYS125 GLN126 VAL127 ASN128 ASN129 ASP130 ALA131 GLN132 LYS133 ALA134 ASN135 LEU136 THR137 THR138 ARG139 ALA140 TYR141 LEU142 SER143 THR144 VAL145 PHE146 GLY147 CYS148 PRO149 TYR150 GLU151 LYS152 ASP153 VAL154 PRO155 ILE156 GLU157 GLN158 VAL159 ILE160 ARG161 LEU162 SER163 GLU164 ALA165 LEU166 PHE167 GLU168 PHE169 GLY170 ILE171 SER172 GLU173 LEU174 SER175 LEU176 GLY177 ASP178 THR179 ILE180 GLY181 ALA182 ALA183 ASN184 PRO185 ALA186 GLN187 VAL188 GLU189 THR190 VAL191 LEU192 GLU193 ALA194 LEU195 LEU196 ALA197 ARG198 PHE199 PRO200 ALA201 ASN202 GLN203 ILE204 ALA205 LEU206 HIS207 PHE208 HIS209 ASP210 THR211 ARG212 GLY213 THR214 ALA215 LEU216 ALA217 ASN218 MSE219 VAL220 THR221 ALA222 LEU223 GLN224 MSE225 GLY226 ILE227 THR228 VAL229 PHE230 ASP231 GLY232 SER233 ALA234 GLY235 GLY236 LEU237 GLY238 GLY239 CYS240 PRO241 TYR242 ALA243 PRO244 GLY245 SER246 SER247 GLY248 ASN249 ALA250 ALA251 THR252 GLU253 ASP254 ILE255 VAL256 TYR257 MSE258 LEU259 GLU260 GLN261 MSE262 ASP263 ILE264 LYS265 THR266 ASN267 VAL268 LYS269 LEU270 GLU271 LYS272 LEU273 LEU274 SER275 ALA276 ALA277 LYS278 TRP279 ILE280 GLU281 GLU282 LYS283 MSE284 GLY285 LYS286 PRO287 LEU288 PRO289 SER290 ARG291 ASN292 LEU293 GLN294 VAL295 PHE296 LYS297 SER298
Ligands
Unit 5 IOD501
Unit 6 IOD502
Unit 7 IOD503
Unit 8 IOD504
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany