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Sequence, Chains, Asymmetric and Biological Units

Title X-RAY STRUCTURES OF MOORELLA THERMOACETICA FPRA. NOVEL DIIRO STRUCTURE AND MECHANISTIC INSIGHTS INTO A SCAVENGING NITRIC REDUCTASE
Keywords NITRIC OXIDE, REDUCTASE, DIIRON SITE, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1YCG     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NITRIC OXIDE REDUCTASE  A 398 3115 0
2  Protein   NITRIC OXIDE REDUCTASE  B 398 3115 0
3  Protein   NITRIC OXIDE REDUCTASE  C 398 3115 0
4  Protein   NITRIC OXIDE REDUCTASE  D 398 3115 0
5  Ligand   NITRIC OXIDE REDUCTASE  A 7 0 42
6  Ligand   NITRIC OXIDE REDUCTASE  B 7 0 42
7  Ligand   NITRIC OXIDE REDUCTASE  C 6 0 41
8  Ligand   NITRIC OXIDE REDUCTASE  D 6 0 41
9 Water     132 0 132
total       1750 12460 298

Proteins
Unit 1 SER2 GLN3 PRO4 VAL5 ALA6 ILE7 THR8 ASP9 GLY10 ILE11 TYR12 TRP13 VAL14 GLY15 ALA16 VAL17 ASP18 TRP19 ASN20 ILE21 ARG22 TYR23 PHE24 HIS25 GLY26 PRO27 ALA28 PHE29 SER30 THR31 HIS32 ARG33 GLY34 THR35 THR36 TYR37 ASN38 ALA39 TYR40 LEU41 ILE42 VAL43 ASP44 ASP45 LYS46 THR47 ALA48 LEU49 VAL50 ASP51 THR52 VAL53 TYR54 GLU55 PRO56 PHE57 LYS58 GLU59 GLU60 LEU61 ILE62 ALA63 LYS64 LEU65 LYS66 GLN67 ILE68 LYS69 ASP70 PRO71 VAL72 LYS73 LEU74 ASP75 TYR76 LEU77 VAL78 VAL79 ASN80 HIS81 THR82 GLU83 SER84 ASP85 HIS86 ALA87 GLY88 ALA89 PHE90 PRO91 ALA92 ILE93 MET94 GLU95 LEU96 CYS97 PRO98 ASP99 ALA100 HIS101 VAL102 LEU103 CYS104 THR105 GLN106 ARG107 ALA108 PHE109 ASP110 SER111 LEU112 LYS113 ALA114 HIS115 TYR116 SER117 HIS118 ILE119 ASP120 PHE121 ASN122 TYR123 THR124 ILE125 VAL126 LYS127 THR128 GLY129 THR130 SER131 VAL132 SER133 LEU134 GLY135 LYS136 ARG137 SER138 LEU139 THR140 PHE141 ILE142 GLU143 ALA144 PRO145 MET146 LEU147 HIS148 TRP149 PRO150 ASP151 SER152 MET153 PHE154 THR155 TYR156 VAL157 PRO158 GLU159 GLU160 ALA161 LEU162 LEU163 LEU164 PRO165 ASN166 ASP167 ALA168 PHE169 GLY170 GLN171 HIS172 ILE173 ALA174 THR175 SER176 VAL177 ARG178 PHE179 ASP180 ASP181 GLN182 VAL183 ASP184 ALA185 GLY186 LEU187 ILE188 MET189 ASP190 GLU191 ALA192 ALA193 LYS194 TYR195 TYR196 ALA197 ASN198 ILE199 LEU200 MET201 PRO202 PHE203 SER204 ASN205 LEU206 ILE207 THR208 LYS209 LYS210 LEU211 ASP212 GLU213 ILE214 GLN215 LYS216 ILE217 ASN218 LEU219 ALA220 ILE221 LYS222 THR223 ILE224 ALA225 PRO226 SER227 HIS228 GLY229 ILE230 ILE231 TRP232 ARG233 LYS234 ASP235 PRO236 GLY237 ARG238 ILE239 ILE240 GLU241 ALA242 TYR243 ALA244 ARG245 TRP246 ALA247 GLU248 GLY249 GLN250 GLY251 LYS252 ALA253 LYS254 ALA255 VAL256 ILE257 ALA258 TYR259 ASP260 THR261 MET262 TRP263 LEU264 SER265 THR266 GLU267 LYS268 MET269 ALA270 HIS271 ALA272 LEU273 MET274 ASP275 GLY276 LEU277 VAL278 ALA279 GLY280 GLY281 CYS282 GLU283 VAL284 LYS285 LEU286 PHE287 LYS288 LEU289 SER290 VAL291 SER292 ASP293 ARG294 ASN295 ASP296 VAL297 ILE298 LYS299 GLU300 ILE301 LEU302 ASP303 ALA304 ARG305 ALA306 VAL307 LEU308 VAL309 GLY310 SER311 PRO312 THR313 ILE314 ASN315 ASN316 ASP317 ILE318 LEU319 PRO320 VAL321 VAL322 SER323 PRO324 LEU325 LEU326 ASP327 ASP328 LEU329 VAL330 GLY331 LEU332 ARG333 PRO334 LYS335 ASN336 LYS337 VAL338 GLY339 LEU340 ALA341 PHE342 GLY343 ALA344 TYR345 GLY346 TRP347 GLY348 GLY349 GLY350 ALA351 GLN352 LYS353 ILE354 LEU355 GLU356 GLU357 ARG358 LEU359 LYS360 ALA361 ALA362 LYS363 ILE364 GLU365 LEU366 ILE367 ALA368 GLU369 PRO370 GLY371 PRO372 THR373 VAL374 GLN375 TRP376 VAL377 PRO378 ARG379 GLY380 GLU381 ASP382 LEU383 GLN384 ARG385 CYS386 TYR387 GLU388 LEU389 GLY390 ARG391 LYS392 ILE393 ALA394 ALA395 ARG396 ILE397 ALA398 ASP399
Unit 2 SER2 GLN3 PRO4 VAL5 ALA6 ILE7 THR8 ASP9 GLY10 ILE11 TYR12 TRP13 VAL14 GLY15 ALA16 VAL17 ASP18 TRP19 ASN20 ILE21 ARG22 TYR23 PHE24 HIS25 GLY26 PRO27 ALA28 PHE29 SER30 THR31 HIS32 ARG33 GLY34 THR35 THR36 TYR37 ASN38 ALA39 TYR40 LEU41 ILE42 VAL43 ASP44 ASP45 LYS46 THR47 ALA48 LEU49 VAL50 ASP51 THR52 VAL53 TYR54 GLU55 PRO56 PHE57 LYS58 GLU59 GLU60 LEU61 ILE62 ALA63 LYS64 LEU65 LYS66 GLN67 ILE68 LYS69 ASP70 PRO71 VAL72 LYS73 LEU74 ASP75 TYR76 LEU77 VAL78 VAL79 ASN80 HIS81 THR82 GLU83 SER84 ASP85 HIS86 ALA87 GLY88 ALA89 PHE90 PRO91 ALA92 ILE93 MET94 GLU95 LEU96 CYS97 PRO98 ASP99 ALA100 HIS101 VAL102 LEU103 CYS104 THR105 GLN106 ARG107 ALA108 PHE109 ASP110 SER111 LEU112 LYS113 ALA114 HIS115 TYR116 SER117 HIS118 ILE119 ASP120 PHE121 ASN122 TYR123 THR124 ILE125 VAL126 LYS127 THR128 GLY129 THR130 SER131 VAL132 SER133 LEU134 GLY135 LYS136 ARG137 SER138 LEU139 THR140 PHE141 ILE142 GLU143 ALA144 PRO145 MET146 LEU147 HIS148 TRP149 PRO150 ASP151 SER152 MET153 PHE154 THR155 TYR156 VAL157 PRO158 GLU159 GLU160 ALA161 LEU162 LEU163 LEU164 PRO165 ASN166 ASP167 ALA168 PHE169 GLY170 GLN171 HIS172 ILE173 ALA174 THR175 SER176 VAL177 ARG178 PHE179 ASP180 ASP181 GLN182 VAL183 ASP184 ALA185 GLY186 LEU187 ILE188 MET189 ASP190 GLU191 ALA192 ALA193 LYS194 TYR195 TYR196 ALA197 ASN198 ILE199 LEU200 MET201 PRO202 PHE203 SER204 ASN205 LEU206 ILE207 THR208 LYS209 LYS210 LEU211 ASP212 GLU213 ILE214 GLN215 LYS216 ILE217 ASN218 LEU219 ALA220 ILE221 LYS222 THR223 ILE224 ALA225 PRO226 SER227 HIS228 GLY229 ILE230 ILE231 TRP232 ARG233 LYS234 ASP235 PRO236 GLY237 ARG238 ILE239 ILE240 GLU241 ALA242 TYR243 ALA244 ARG245 TRP246 ALA247 GLU248 GLY249 GLN250 GLY251 LYS252 ALA253 LYS254 ALA255 VAL256 ILE257 ALA258 TYR259 ASP260 THR261 MET262 TRP263 LEU264 SER265 THR266 GLU267 LYS268 MET269 ALA270 HIS271 ALA272 LEU273 MET274 ASP275 GLY276 LEU277 VAL278 ALA279 GLY280 GLY281 CYS282 GLU283 VAL284 LYS285 LEU286 PHE287 LYS288 LEU289 SER290 VAL291 SER292 ASP293 ARG294 ASN295 ASP296 VAL297 ILE298 LYS299 GLU300 ILE301 LEU302 ASP303 ALA304 ARG305 ALA306 VAL307 LEU308 VAL309 GLY310 SER311 PRO312 THR313 ILE314 ASN315 ASN316 ASP317 ILE318 LEU319 PRO320 VAL321 VAL322 SER323 PRO324 LEU325 LEU326 ASP327 ASP328 LEU329 VAL330 GLY331 LEU332 ARG333 PRO334 LYS335 ASN336 LYS337 VAL338 GLY339 LEU340 ALA341 PHE342 GLY343 ALA344 TYR345 GLY346 TRP347 GLY348 GLY349 GLY350 ALA351 GLN352 LYS353 ILE354 LEU355 GLU356 GLU357 ARG358 LEU359 LYS360 ALA361 ALA362 LYS363 ILE364 GLU365 LEU366 ILE367 ALA368 GLU369 PRO370 GLY371 PRO372 THR373 VAL374 GLN375 TRP376 VAL377 PRO378 ARG379 GLY380 GLU381 ASP382 LEU383 GLN384 ARG385 CYS386 TYR387 GLU388 LEU389 GLY390 ARG391 LYS392 ILE393 ALA394 ALA395 ARG396 ILE397 ALA398 ASP399
Unit 3 SER2 GLN3 PRO4 VAL5 ALA6 ILE7 THR8 ASP9 GLY10 ILE11 TYR12 TRP13 VAL14 GLY15 ALA16 VAL17 ASP18 TRP19 ASN20 ILE21 ARG22 TYR23 PHE24 HIS25 GLY26 PRO27 ALA28 PHE29 SER30 THR31 HIS32 ARG33 GLY34 THR35 THR36 TYR37 ASN38 ALA39 TYR40 LEU41 ILE42 VAL43 ASP44 ASP45 LYS46 THR47 ALA48 LEU49 VAL50 ASP51 THR52 VAL53 TYR54 GLU55 PRO56 PHE57 LYS58 GLU59 GLU60 LEU61 ILE62 ALA63 LYS64 LEU65 LYS66 GLN67 ILE68 LYS69 ASP70 PRO71 VAL72 LYS73 LEU74 ASP75 TYR76 LEU77 VAL78 VAL79 ASN80 HIS81 THR82 GLU83 SER84 ASP85 HIS86 ALA87 GLY88 ALA89 PHE90 PRO91 ALA92 ILE93 MET94 GLU95 LEU96 CYS97 PRO98 ASP99 ALA100 HIS101 VAL102 LEU103 CYS104 THR105 GLN106 ARG107 ALA108 PHE109 ASP110 SER111 LEU112 LYS113 ALA114 HIS115 TYR116 SER117 HIS118 ILE119 ASP120 PHE121 ASN122 TYR123 THR124 ILE125 VAL126 LYS127 THR128 GLY129 THR130 SER131 VAL132 SER133 LEU134 GLY135 LYS136 ARG137 SER138 LEU139 THR140 PHE141 ILE142 GLU143 ALA144 PRO145 MET146 LEU147 HIS148 TRP149 PRO150 ASP151 SER152 MET153 PHE154 THR155 TYR156 VAL157 PRO158 GLU159 GLU160 ALA161 LEU162 LEU163 LEU164 PRO165 ASN166 ASP167 ALA168 PHE169 GLY170 GLN171 HIS172 ILE173 ALA174 THR175 SER176 VAL177 ARG178 PHE179 ASP180 ASP181 GLN182 VAL183 ASP184 ALA185 GLY186 LEU187 ILE188 MET189 ASP190 GLU191 ALA192 ALA193 LYS194 TYR195 TYR196 ALA197 ASN198 ILE199 LEU200 MET201 PRO202 PHE203 SER204 ASN205 LEU206 ILE207 THR208 LYS209 LYS210 LEU211 ASP212 GLU213 ILE214 GLN215 LYS216 ILE217 ASN218 LEU219 ALA220 ILE221 LYS222 THR223 ILE224 ALA225 PRO226 SER227 HIS228 GLY229 ILE230 ILE231 TRP232 ARG233 LYS234 ASP235 PRO236 GLY237 ARG238 ILE239 ILE240 GLU241 ALA242 TYR243 ALA244 ARG245 TRP246 ALA247 GLU248 GLY249 GLN250 GLY251 LYS252 ALA253 LYS254 ALA255 VAL256 ILE257 ALA258 TYR259 ASP260 THR261 MET262 TRP263 LEU264 SER265 THR266 GLU267 LYS268 MET269 ALA270 HIS271 ALA272 LEU273 MET274 ASP275 GLY276 LEU277 VAL278 ALA279 GLY280 GLY281 CYS282 GLU283 VAL284 LYS285 LEU286 PHE287 LYS288 LEU289 SER290 VAL291 SER292 ASP293 ARG294 ASN295 ASP296 VAL297 ILE298 LYS299 GLU300 ILE301 LEU302 ASP303 ALA304 ARG305 ALA306 VAL307 LEU308 VAL309 GLY310 SER311 PRO312 THR313 ILE314 ASN315 ASN316 ASP317 ILE318 LEU319 PRO320 VAL321 VAL322 SER323 PRO324 LEU325 LEU326 ASP327 ASP328 LEU329 VAL330 GLY331 LEU332 ARG333 PRO334 LYS335 ASN336 LYS337 VAL338 GLY339 LEU340 ALA341 PHE342 GLY343 ALA344 TYR345 GLY346 TRP347 GLY348 GLY349 GLY350 ALA351 GLN352 LYS353 ILE354 LEU355 GLU356 GLU357 ARG358 LEU359 LYS360 ALA361 ALA362 LYS363 ILE364 GLU365 LEU366 ILE367 ALA368 GLU369 PRO370 GLY371 PRO372 THR373 VAL374 GLN375 TRP376 VAL377 PRO378 ARG379 GLY380 GLU381 ASP382 LEU383 GLN384 ARG385 CYS386 TYR387 GLU388 LEU389 GLY390 ARG391 LYS392 ILE393 ALA394 ALA395 ARG396 ILE397 ALA398 ASP399
Unit 4 SER2 GLN3 PRO4 VAL5 ALA6 ILE7 THR8 ASP9 GLY10 ILE11 TYR12 TRP13 VAL14 GLY15 ALA16 VAL17 ASP18 TRP19 ASN20 ILE21 ARG22 TYR23 PHE24 HIS25 GLY26 PRO27 ALA28 PHE29 SER30 THR31 HIS32 ARG33 GLY34 THR35 THR36 TYR37 ASN38 ALA39 TYR40 LEU41 ILE42 VAL43 ASP44 ASP45 LYS46 THR47 ALA48 LEU49 VAL50 ASP51 THR52 VAL53 TYR54 GLU55 PRO56 PHE57 LYS58 GLU59 GLU60 LEU61 ILE62 ALA63 LYS64 LEU65 LYS66 GLN67 ILE68 LYS69 ASP70 PRO71 VAL72 LYS73 LEU74 ASP75 TYR76 LEU77 VAL78 VAL79 ASN80 HIS81 THR82 GLU83 SER84 ASP85 HIS86 ALA87 GLY88 ALA89 PHE90 PRO91 ALA92 ILE93 MET94 GLU95 LEU96 CYS97 PRO98 ASP99 ALA100 HIS101 VAL102 LEU103 CYS104 THR105 GLN106 ARG107 ALA108 PHE109 ASP110 SER111 LEU112 LYS113 ALA114 HIS115 TYR116 SER117 HIS118 ILE119 ASP120 PHE121 ASN122 TYR123 THR124 ILE125 VAL126 LYS127 THR128 GLY129 THR130 SER131 VAL132 SER133 LEU134 GLY135 LYS136 ARG137 SER138 LEU139 THR140 PHE141 ILE142 GLU143 ALA144 PRO145 MET146 LEU147 HIS148 TRP149 PRO150 ASP151 SER152 MET153 PHE154 THR155 TYR156 VAL157 PRO158 GLU159 GLU160 ALA161 LEU162 LEU163 LEU164 PRO165 ASN166 ASP167 ALA168 PHE169 GLY170 GLN171 HIS172 ILE173 ALA174 THR175 SER176 VAL177 ARG178 PHE179 ASP180 ASP181 GLN182 VAL183 ASP184 ALA185 GLY186 LEU187 ILE188 MET189 ASP190 GLU191 ALA192 ALA193 LYS194 TYR195 TYR196 ALA197 ASN198 ILE199 LEU200 MET201 PRO202 PHE203 SER204 ASN205 LEU206 ILE207 THR208 LYS209 LYS210 LEU211 ASP212 GLU213 ILE214 GLN215 LYS216 ILE217 ASN218 LEU219 ALA220 ILE221 LYS222 THR223 ILE224 ALA225 PRO226 SER227 HIS228 GLY229 ILE230 ILE231 TRP232 ARG233 LYS234 ASP235 PRO236 GLY237 ARG238 ILE239 ILE240 GLU241 ALA242 TYR243 ALA244 ARG245 TRP246 ALA247 GLU248 GLY249 GLN250 GLY251 LYS252 ALA253 LYS254 ALA255 VAL256 ILE257 ALA258 TYR259 ASP260 THR261 MET262 TRP263 LEU264 SER265 THR266 GLU267 LYS268 MET269 ALA270 HIS271 ALA272 LEU273 MET274 ASP275 GLY276 LEU277 VAL278 ALA279 GLY280 GLY281 CYS282 GLU283 VAL284 LYS285 LEU286 PHE287 LYS288 LEU289 SER290 VAL291 SER292 ASP293 ARG294 ASN295 ASP296 VAL297 ILE298 LYS299 GLU300 ILE301 LEU302 ASP303 ALA304 ARG305 ALA306 VAL307 LEU308 VAL309 GLY310 SER311 PRO312 THR313 ILE314 ASN315 ASN316 ASP317 ILE318 LEU319 PRO320 VAL321 VAL322 SER323 PRO324 LEU325 LEU326 ASP327 ASP328 LEU329 VAL330 GLY331 LEU332 ARG333 PRO334 LYS335 ASN336 LYS337 VAL338 GLY339 LEU340 ALA341 PHE342 GLY343 ALA344 TYR345 GLY346 TRP347 GLY348 GLY349 GLY350 ALA351 GLN352 LYS353 ILE354 LEU355 GLU356 GLU357 ARG358 LEU359 LYS360 ALA361 ALA362 LYS363 ILE364 GLU365 LEU366 ILE367 ALA368 GLU369 PRO370 GLY371 PRO372 THR373 VAL374 GLN375 TRP376 VAL377 PRO378 ARG379 GLY380 GLU381 ASP382 LEU383 GLN384 ARG385 CYS386 TYR387 GLU388 LEU389 GLY390 ARG391 LYS392 ILE393 ALA394 ALA395 ARG396 ILE397 ALA398 ASP399

Ligands
Unit 5 ZN401 ZN402 ZN403 ZN404 FEO501 EDO602 FMN701
Unit 6 ZN411 ZN412 ZN413 ZN414 FEO511 EDO612 FMN711
Unit 7 ZN421 ZN422 ZN423 FEO521 EDO622 FMN721
Unit 8 ZN431 ZN432 ZN433 FEO531 EDO632 FMN731

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany