1YBF - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF AMP NUCLEOSIDASE FROM BACTEROIDES THETAIOTAOMICRON VPI-5482
• Keywords: STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, NEW RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, T1840, AM NUCLEOSIDASE, BACTEROIDES THETAIOTAOMICRON, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1YBF	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	AMP NUCLEOSIDASE	A	240	1812	64
2	Protein	AMP NUCLEOSIDASE	B	228	1722	56
3	Protein	AMP NUCLEOSIDASE	C	230	1737	64
4	Water			16	0	16
total				714	5271	200

Proteins

Unit 1	THR 5 LYS 6 GLN 7 GLU 8 ILE 9 VAL 10 GLU 11 ASN 12 TRP 13 LEU 14 PRO 15 ARG 16 TYR 17 THR 18 GLN 19 ARG 20 GLN 21 LEU 22 ILE 23 ASP 24 PHE 25 GLU 26 PRO 27 TYR 28 ILE 29 LEU 30 LEU 31 THR 32 ASN 33 PHE 34 SER 35 HIS 36 TYR 37 LEU 38 HIS 39 VAL 40 PHE 41 ALA 42 GLU 43 HIS 44 TYR 45 GLY 46 VAL 47 PRO 48 ILE 49 VAL 50 GLY 51 GLU 52 HIS 53 THR 54 SER 55 MSE 56 PRO 57 ASN 58 ALA 59 SER 60 ALA 61 GLU 62 GLY 63 VAL 64 THR 65 LEU 66 ILE 67 ASN 68 PHE 69 GLY 70 MSE 71 GLY 72 SER 73 ALA 74 ASN 75 ALA 76 ALA 77 THR 78 ILE 79 MSE 80 ASP 81 LEU 82 LEU 83 TRP 84 ALA 85 ILE 86 HIS 87 PRO 88 LYS 89 ALA 90 VAL 91 ILE 92 PHE 93 LEU 94 GLY 95 LYS 96 CYS 97 GLY 98 GLY 99 LEU 100 LYS 101 LEU 102 GLU 103 ASN 104 ALA 105 LEU 106 GLY 107 ASP 108 TYR 109 LEU 110 LEU 111 PRO 112 ILE 113 ALA 114 ALA 115 ILE 116 ARG 117 GLY 118 GLU 119 GLY 120 THR 121 SER 122 ASN 123 ASP 124 TYR 125 LEU 126 PRO 127 GLU 128 GLU 129 VAL 130 PRO 131 SER 132 LEU 133 PRO 134 SER 135 PHE 136 SER 137 VAL 138 LEU 139 ARG 140 ALA 141 ILE 142 SER 143 SER 144 ALA 145 ILE 146 GLN 147 ASN 148 LYS 149 GLY 150 LYS 151 ASP 152 TYR 153 TRP 154 THR 155 GLY 156 THR 157 VAL 158 TYR 159 THR 160 THR 161 ASN 162 ARG 163 ARG 164 VAL 165 TRP 166 GLU 167 TYR 168 ASP 169 GLU 170 LYS 171 PHE 172 LYS 173 ASP 174 TYR 175 LEU 176 ARG 177 SER 178 THR 179 HIS 180 ALA 181 SER 182 GLY 183 VAL 184 ASP 185 MSE 186 GLU 187 THR 188 ALA 189 THR 190 LEU 191 MSE 192 THR 193 VAL 194 GLY 195 PHE 196 ALA 197 ASN 198 LYS 199 ILE 200 PRO 201 MSE 202 GLY 203 ALA 204 LEU 205 LEU 206 LEU 207 ILE 208 SER 209 ASP 210 ARG 211 PRO 212 MSE 213 PHE 214 PRO 215 GLU 216 GLY 217 VAL 218 LYS 219 THR 220 GLU 221 GLU 222 SER 223 ASN 230 PHE 231 ALA 232 GLU 233 GLU 234 HIS 235 LEU 236 MSE 237 LEU 238 GLY 239 ILE 240 ASP 241 ALA 242 LEU 243 GLU 244 ILE 245 ILE 246 ARG 247 GLU 248 ASN 249 LYS 250
Unit 2	THR 5 LYS 6 GLN 7 GLU 8 ILE 9 VAL 10 GLU 11 ASN 12 TRP 13 LEU 14 PRO 15 ARG 16 TYR 17 THR 18 GLN 19 ARG 20 GLN 21 LEU 22 ILE 23 ASP 24 PHE 25 GLU 26 PRO 27 TYR 28 ILE 29 LEU 30 LEU 31 THR 32 ASN 33 PHE 34 SER 35 HIS 36 TYR 37 LEU 38 HIS 39 VAL 40 PHE 41 ALA 42 GLU 43 HIS 44 TYR 45 GLY 46 VAL 47 PRO 48 ILE 49 VAL 50 GLY 51 GLU 52 HIS 53 THR 54 SER 55 MSE 56 PRO 57 ASN 58 ALA 59 SER 60 ALA 61 GLU 62 GLY 63 VAL 64 THR 65 LEU 66 ILE 67 ASN 68 PHE 69 GLY 70 MSE 71 GLY 72 SER 73 ALA 74 ASN 75 ALA 76 ALA 77 THR 78 ILE 79 MSE 80 ASP 81 LEU 82 LEU 83 TRP 84 ALA 85 ILE 86 HIS 87 PRO 88 LYS 89 ALA 90 VAL 91 ILE 92 PHE 93 LEU 94 GLY 95 LYS 96 CYS 97 GLY 98 GLY 99 LEU 100 LYS 101 LEU 102 GLU 103 ASN 104 ALA 105 LEU 106 GLY 107 ASP 108 TYR 109 LEU 110 LEU 111 PRO 112 ILE 113 ALA 114 ALA 115 ILE 116 ARG 117 GLY 118 GLU 119 GLY 120 THR 121 SER 122 ASN 123 ASP 124 TYR 125 LEU 126 PRO 127 GLU 128 GLU 129 VAL 130 PRO 131 SER 132 LEU 133 PRO 134 SER 135 PHE 136 SER 137 VAL 138 LEU 139 ARG 140 ALA 141 ILE 142 SER 143 SER 144 ALA 145 ILE 146 GLN 147 ASN 148 LYS 149 GLY 150 LYS 151 ASP 152 TYR 153 TRP 154 THR 155 GLY 156 THR 157 VAL 158 TYR 159 THR 160 THR 161 ASN 162 ARG 163 ARG 164 VAL 165 TRP 166 GLU 167 TYR 168 ASP 169 GLU 170 LYS 171 PHE 172 LYS 173 ASP 174 TYR 175 LEU 176 ARG 177 SER 178 THR 179 HIS 180 ALA 181 SER 182 GLY 183 VAL 184 ASP 185 MSE 186 GLU 187 THR 188 ALA 189 THR 190 LEU 191 MSE 192 THR 193 VAL 194 GLY 195 PHE 196 ALA 197 ASN 198 LYS 199 ILE 200 PRO 201 MSE 202 GLY 203 ALA 204 LEU 205 LEU 206 LEU 207 ILE 208 SER 209 ASN 230 PHE 231 ALA 232 GLU 233 GLU 234 HIS 235 LEU 236 MSE 237 LEU 238 GLY 239 ILE 240 ASP 241 ALA 242 LEU 243 GLU 244 ILE 245 ILE 246 ARG 247 GLU 248 ASN 249 LYS 250 SER 251 SER 252
Unit 3	LYS 4 THR 5 LYS 6 GLN 7 GLU 8 ILE 9 VAL 10 GLU 11 ASN 12 TRP 13 LEU 14 PRO 15 ARG 16 TYR 17 THR 18 GLN 19 ARG 20 GLN 21 LEU 22 ILE 23 ASP 24 PHE 25 GLU 26 PRO 27 TYR 28 ILE 29 LEU 30 LEU 31 THR 32 ASN 33 PHE 34 SER 35 HIS 36 TYR 37 LEU 38 HIS 39 VAL 40 PHE 41 ALA 42 GLU 43 HIS 44 TYR 45 GLY 46 VAL 47 PRO 48 ILE 49 VAL 50 GLY 51 GLU 52 HIS 53 THR 54 SER 55 MSE 56 PRO 57 ASN 58 ALA 59 SER 60 ALA 61 GLU 62 GLY 63 VAL 64 THR 65 LEU 66 ILE 67 ASN 68 PHE 69 GLY 70 MSE 71 GLY 72 SER 73 ALA 74 ASN 75 ALA 76 ALA 77 THR 78 ILE 79 MSE 80 ASP 81 LEU 82 LEU 83 TRP 84 ALA 85 ILE 86 HIS 87 PRO 88 LYS 89 ALA 90 VAL 91 ILE 92 PHE 93 LEU 94 GLY 95 LYS 96 CYS 97 GLY 98 GLY 99 LEU 100 ALA 105 LEU 106 GLY 107 ASP 108 TYR 109 LEU 110 LEU 111 PRO 112 ILE 113 ALA 114 ALA 115 ILE 116 ARG 117 GLY 118 GLU 119 GLY 120 THR 121 SER 122 ASN 123 ASP 124 TYR 125 LEU 126 PRO 127 GLU 128 GLU 129 VAL 130 PRO 131 SER 132 LEU 133 PRO 134 SER 135 PHE 136 SER 137 VAL 138 LEU 139 ARG 140 ALA 141 ILE 142 SER 143 SER 144 ALA 145 ILE 146 GLN 147 ASN 148 LYS 149 GLY 150 LYS 151 ASP 152 TYR 153 TRP 154 THR 155 GLY 156 THR 157 VAL 158 TYR 159 THR 160 THR 161 ASN 162 ARG 163 ARG 164 VAL 165 TRP 166 GLU 167 TYR 168 ASP 169 GLU 170 LYS 171 PHE 172 LYS 173 ASP 174 TYR 175 LEU 176 ARG 177 SER 178 THR 179 HIS 180 ALA 181 SER 182 GLY 183 VAL 184 ASP 185 MSE 186 GLU 187 THR 188 ALA 189 THR 190 LEU 191 MSE 192 THR 193 VAL 194 GLY 195 PHE 196 ALA 197 ASN 198 LYS 199 ILE 200 PRO 201 MSE 202 GLY 203 ALA 204 LEU 205 LEU 206 LEU 207 ILE 208 SER 209 ASP 210 ARG 211 PRO 212 MSE 213 PHE 214 PRO 215 GLU 216 ASN 230 PHE 231 ALA 232 GLU 233 GLU 234 HIS 235 LEU 236 MSE 237 LEU 238 GLY 239 ILE 240 ASP 241 ALA 242 LEU 243 GLU 244 ILE 245 ILE 246 ARG 247 GLU 248 ASN 249 LYS 250