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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE KAINATE RECEPTOR SUBUNIT GLUR6 AGONIST BIND COMPLEXED WITH DOMOIC ACID
Keywords KAINATE RECEPTOR, GLUTAMATE RECEPTOR, MEMBRANE PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1YAE     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLUTAMATE RECEPTOR, IONOTROPIC KAINATE 2  A 261 2079 0
2  Protein   GLUTAMATE RECEPTOR, IONOTROPIC KAINATE 2  B 261 2082 0
3  Protein   GLUTAMATE RECEPTOR, IONOTROPIC KAINATE 2  C 257 2053 0
4  Protein   GLUTAMATE RECEPTOR, IONOTROPIC KAINATE 2  D 259 2067 0
5  Protein   GLUTAMATE RECEPTOR, IONOTROPIC KAINATE 2  E 257 2056 0
6  Protein   GLUTAMATE RECEPTOR, IONOTROPIC KAINATE 2  F 226 1815 0
7  Ligand    G 2 0 24
8  Ligand   GLUTAMATE RECEPTOR, IONOTROPIC KAINATE 2  A 1 0 22
9  Ligand   GLUTAMATE RECEPTOR, IONOTROPIC KAINATE 2  B 3 0 50
10  Ligand   GLUTAMATE RECEPTOR, IONOTROPIC KAINATE 2  C 3 0 50
11  Ligand   GLUTAMATE RECEPTOR, IONOTROPIC KAINATE 2  D 3 0 50
12  Ligand   GLUTAMATE RECEPTOR, IONOTROPIC KAINATE 2  E 3 0 50
13  Ligand   GLUTAMATE RECEPTOR, IONOTROPIC KAINATE 2  F 2 0 36
14 Water     78 0 78
total       1616 12152 360
Proteins
Unit 1 PRO421 ALA422 ASN423 ILE424 THR425 ASP426 SER427 LEU428 SER429 ASN430 ARG431 SER432 LEU433 ILE434 VAL435 THR436 THR437 ILE438 LEU439 GLU440 GLU441 PRO442 TYR443 VAL444 LEU445 PHE446 LYS447 LYS448 SER449 ASP450 LYS451 PRO452 LEU453 TYR454 GLY455 ASN456 ASP457 ARG458 PHE459 GLU460 GLY461 TYR462 CYS463 ILE464 ASP465 LEU466 LEU467 ARG468 GLU469 LEU470 SER471 THR472 ILE473 LEU474 GLY475 PHE476 THR477 TYR478 GLU479 ILE480 ARG481 LEU482 VAL483 GLU484 ASP485 GLY486 LYS487 TYR488 GLY489 ALA490 GLN491 ASP492 ASP493 VAL494 ASN495 GLY496 GLN497 TRP498 ASN499 GLY500 MET501 VAL502 ARG503 GLU504 LEU505 ILE506 ASP507 HIS508 LYS509 ALA510 ASP511 LEU512 ALA513 VAL514 ALA515 PRO516 LEU517 ALA518 ILE519 THR520 TYR521 VAL522 ARG523 GLU524 LYS525 VAL526 ILE527 ASP528 PHE529 SER530 LYS531 PRO532 PHE533 MET534 THR535 LEU536 GLY537 ILE538 SER539 ILE540 LEU541 TYR542 ARG543 LYS544 ILE668 ASP669 SER670 ALA671 ASP672 ASP673 LEU674 ALA675 LYS676 GLN677 THR678 LYS679 ILE680 GLU681 TYR682 GLY683 ALA684 VAL685 GLU686 ASP687 GLY688 ALA689 THR690 MET691 THR692 PHE693 PHE694 LYS695 LYS696 SER697 LYS698 ILE699 SER700 THR701 TYR702 ASP703 LYS704 MET705 TRP706 ALA707 PHE708 MET709 SER710 SER711 ARG712 ARG713 GLN714 SER715 VAL716 LEU717 VAL718 LYS719 SER720 ASN721 GLU722 GLU723 GLY724 ILE725 GLN726 ARG727 VAL728 LEU729 THR730 SER731 ASP732 TYR733 ALA734 PHE735 LEU736 MET737 GLU738 SER739 THR740 THR741 ILE742 GLU743 PHE744 VAL745 THR746 GLN747 ARG748 ASN749 CYS750 ASN751 LEU752 THR753 GLN754 ILE755 GLY756 GLY757 LEU758 ILE759 ASP760 SER761 LYS762 GLY763 TYR764 GLY765 VAL766 GLY767 THR768 PRO769 MET770 GLY771 SER772 PRO773 TYR774 ARG775 ASP776 LYS777 ILE778 THR779 ILE780 ALA781 ILE782 LEU783 GLN784 LEU785 GLN786 GLU787 GLU788 GLY789 LYS790 LEU791 HIS792 MET793 MET794 LYS795 GLU796 LYS797 TRP798 TRP799 ARG800 GLY801 ASN802 GLY803 CYS804
Unit 2 ASN423 ILE424 THR425 ASP426 SER427 LEU428 SER429 ASN430 ARG431 SER432 LEU433 ILE434 VAL435 THR436 THR437 ILE438 LEU439 GLU440 GLU441 PRO442 TYR443 VAL444 LEU445 PHE446 LYS447 LYS448 SER449 ASP450 LYS451 PRO452 LEU453 TYR454 GLY455 ASN456 ASP457 ARG458 PHE459 GLU460 GLY461 TYR462 CYS463 ILE464 ASP465 LEU466 LEU467 ARG468 GLU469 LEU470 SER471 THR472 ILE473 LEU474 GLY475 PHE476 THR477 TYR478 GLU479 ILE480 ARG481 LEU482 VAL483 GLU484 ASP485 GLY486 LYS487 TYR488 GLY489 ALA490 GLN491 ASP492 ASP493 VAL494 ASN495 GLY496 GLN497 TRP498 ASN499 GLY500 MET501 VAL502 ARG503 GLU504 LEU505 ILE506 ASP507 HIS508 LYS509 ALA510 ASP511 LEU512 ALA513 VAL514 ALA515 PRO516 LEU517 ALA518 ILE519 THR520 TYR521 VAL522 ARG523 GLU524 LYS525 VAL526 ILE527 ASP528 PHE529 SER530 LYS531 PRO532 PHE533 MET534 THR535 LEU536 GLY537 ILE538 SER539 ILE540 LEU541 TYR542 ARG543 LYS544 PRO545 ASN546 ILE668 ASP669 SER670 ALA671 ASP672 ASP673 LEU674 ALA675 LYS676 GLN677 THR678 LYS679 ILE680 GLU681 TYR682 GLY683 ALA684 VAL685 GLU686 ASP687 GLY688 ALA689 THR690 MET691 THR692 PHE693 PHE694 LYS695 LYS696 SER697 LYS698 ILE699 SER700 THR701 TYR702 ASP703 LYS704 MET705 TRP706 ALA707 PHE708 MET709 SER710 SER711 ARG712 ARG713 GLN714 SER715 VAL716 LEU717 VAL718 LYS719 SER720 ASN721 GLU722 GLU723 GLY724 ILE725 GLN726 ARG727 VAL728 LEU729 THR730 SER731 ASP732 TYR733 ALA734 PHE735 LEU736 MET737 GLU738 SER739 THR740 THR741 ILE742 GLU743 PHE744 VAL745 THR746 GLN747 ARG748 ASN749 CYS750 ASN751 LEU752 THR753 GLN754 ILE755 GLY756 GLY757 LEU758 ILE759 ASP760 SER761 LYS762 GLY763 TYR764 GLY765 VAL766 GLY767 THR768 PRO769 MET770 GLY771 SER772 PRO773 TYR774 ARG775 ASP776 LYS777 ILE778 THR779 ILE780 ALA781 ILE782 LEU783 GLN784 LEU785 GLN786 GLU787 GLU788 GLY789 LYS790 LEU791 HIS792 MET793 MET794 LYS795 GLU796 LYS797 TRP798 TRP799 ARG800 GLY801 ASN802 GLY803 CYS804
Unit 3 ASN423 ILE424 THR425 ASP426 SER427 LEU428 SER429 ASN430 ARG431 SER432 LEU433 ILE434 VAL435 THR436 THR437 ILE438 LEU439 GLU440 GLU441 PRO442 TYR443 VAL444 LEU445 PHE446 LYS447 LYS448 SER449 ASP450 LYS451 PRO452 LEU453 TYR454 GLY455 ASN456 ASP457 ARG458 PHE459 GLU460 GLY461 TYR462 CYS463 ILE464 ASP465 LEU466 LEU467 ARG468 GLU469 LEU470 SER471 THR472 ILE473 LEU474 GLY475 PHE476 THR477 TYR478 GLU479 ILE480 ARG481 LEU482 VAL483 GLU484 ASP485 GLY486 LYS487 TYR488 GLY489 ALA490 GLN491 ASP492 ASP493 VAL494 ASN495 GLY496 GLN497 TRP498 ASN499 GLY500 MET501 VAL502 ARG503 GLU504 LEU505 ILE506 ASP507 HIS508 LYS509 ALA510 ASP511 LEU512 ALA513 VAL514 ALA515 PRO516 LEU517 ALA518 ILE519 THR520 TYR521 VAL522 ARG523 GLU524 LYS525 VAL526 ILE527 ASP528 PHE529 SER530 LYS531 PRO532 PHE533 MET534 THR535 LEU536 GLY537 ILE538 SER539 ILE540 LEU541 TYR542 ARG543 LYS544 PRO545 ASP669 SER670 ALA671 ASP672 ASP673 LEU674 ALA675 LYS676 GLN677 THR678 LYS679 ILE680 GLU681 TYR682 GLY683 ALA684 VAL685 GLU686 ASP687 GLY688 ALA689 THR690 MET691 THR692 PHE693 PHE694 LYS695 LYS696 SER697 LYS698 ILE699 SER700 THR701 TYR702 ASP703 LYS704 MET705 TRP706 ALA707 PHE708 MET709 SER710 SER711 ARG712 ARG713 GLN714 SER715 VAL716 LEU717 VAL718 LYS719 SER720 ASN721 GLU722 GLU723 GLY724 ILE725 GLN726 ARG727 VAL728 LEU729 THR730 SER731 ASP732 TYR733 ALA734 PHE735 LEU736 MET737 GLU738 SER739 THR740 THR741 ILE742 GLU743 PHE744 VAL745 THR746 GLN747 ARG748 ASN749 CYS750 ASN751 LEU752 THR753 GLN754 ILE755 GLY756 GLY757 LEU758 ILE759 ASP760 SER761 LYS762 GLY763 TYR764 GLY765 VAL766 GLY767 THR768 PRO769 MET770 GLY771 SER772 PRO773 TYR774 ARG775 ASP776 LYS777 ILE778 THR779 ILE780 ALA781 ILE782 LEU783 GLN784 LEU785 GLN786 GLU787 GLU788 GLY789 LYS790 LEU791 HIS792 MET793 MET794 LYS795 GLU796 LYS797 TRP798 TRP799 ARG800 GLY801 ASN802
Unit 4 ASN423 ILE424 THR425 ASP426 SER427 LEU428 SER429 ASN430 ARG431 SER432 LEU433 ILE434 VAL435 THR436 THR437 ILE438 LEU439 GLU440 GLU441 PRO442 TYR443 VAL444 LEU445 PHE446 LYS447 LYS448 SER449 ASP450 LYS451 PRO452 LEU453 TYR454 GLY455 ASN456 ASP457 ARG458 PHE459 GLU460 GLY461 TYR462 CYS463 ILE464 ASP465 LEU466 LEU467 ARG468 GLU469 LEU470 SER471 THR472 ILE473 LEU474 GLY475 PHE476 THR477 TYR478 GLU479 ILE480 ARG481 LEU482 VAL483 GLU484 ASP485 GLY486 LYS487 TYR488 GLY489 ALA490 GLN491 ASP492 ASP493 VAL494 ASN495 GLY496 GLN497 TRP498 ASN499 GLY500 MET501 VAL502 ARG503 GLU504 LEU505 ILE506 ASP507 HIS508 LYS509 ALA510 ASP511 LEU512 ALA513 VAL514 ALA515 PRO516 LEU517 ALA518 ILE519 THR520 TYR521 VAL522 ARG523 GLU524 LYS525 VAL526 ILE527 ASP528 PHE529 SER530 LYS531 PRO532 PHE533 MET534 THR535 LEU536 GLY537 ILE538 SER539 ILE540 LEU541 TYR542 ARG543 LYS544 ILE668 ASP669 SER670 ALA671 ASP672 ASP673 LEU674 ALA675 LYS676 GLN677 THR678 LYS679 ILE680 GLU681 TYR682 GLY683 ALA684 VAL685 GLU686 ASP687 GLY688 ALA689 THR690 MET691 THR692 PHE693 PHE694 LYS695 LYS696 SER697 LYS698 ILE699 SER700 THR701 TYR702 ASP703 LYS704 MET705 TRP706 ALA707 PHE708 MET709 SER710 SER711 ARG712 ARG713 GLN714 SER715 VAL716 LEU717 VAL718 LYS719 SER720 ASN721 GLU722 GLU723 GLY724 ILE725 GLN726 ARG727 VAL728 LEU729 THR730 SER731 ASP732 TYR733 ALA734 PHE735 LEU736 MET737 GLU738 SER739 THR740 THR741 ILE742 GLU743 PHE744 VAL745 THR746 GLN747 ARG748 ASN749 CYS750 ASN751 LEU752 THR753 GLN754 ILE755 GLY756 GLY757 LEU758 ILE759 ASP760 SER761 LYS762 GLY763 TYR764 GLY765 VAL766 GLY767 THR768 PRO769 MET770 GLY771 SER772 PRO773 TYR774 ARG775 ASP776 LYS777 ILE778 THR779 ILE780 ALA781 ILE782 LEU783 GLN784 LEU785 GLN786 GLU787 GLU788 GLY789 LYS790 LEU791 HIS792 MET793 MET794 LYS795 GLU796 LYS797 TRP798 TRP799 ARG800 GLY801 ASN802 GLY803 CYS804
Unit 5 ASN423 ILE424 THR425 ASP426 SER427 LEU428 SER429 ASN430 ARG431 SER432 LEU433 ILE434 VAL435 THR436 THR437 ILE438 LEU439 GLU440 GLU441 PRO442 TYR443 VAL444 LEU445 PHE446 LYS447 LYS448 SER449 ASP450 LYS451 PRO452 LEU453 TYR454 GLY455 ASN456 ASP457 ARG458 PHE459 GLU460 GLY461 TYR462 CYS463 ILE464 ASP465 LEU466 LEU467 ARG468 GLU469 LEU470 SER471 THR472 ILE473 LEU474 GLY475 PHE476 THR477 TYR478 GLU479 ILE480 ARG481 LEU482 VAL483 GLU484 ASP485 GLY486 LYS487 TYR488 GLY489 ALA490 GLN491 ASP492 ASP493 VAL494 ASN495 GLY496 GLN497 TRP498 ASN499 GLY500 MET501 VAL502 ARG503 GLU504 LEU505 ILE506 ASP507 HIS508 LYS509 ALA510 ASP511 LEU512 ALA513 VAL514 ALA515 PRO516 LEU517 ALA518 ILE519 THR520 TYR521 VAL522 ARG523 GLU524 LYS525 VAL526 ILE527 ASP528 PHE529 SER530 LYS531 PRO532 PHE533 MET534 THR535 LEU536 GLY537 ILE538 SER539 ILE540 LEU541 TYR542 ARG543 LYS544 PRO545 ILE668 ASP669 SER670 ALA671 ASP672 ASP673 LEU674 ALA675 LYS676 GLN677 THR678 LYS679 ILE680 GLU681 TYR682 GLY683 ALA684 VAL685 GLU686 ASP687 GLY688 ALA689 THR690 MET691 THR692 PHE693 PHE694 LYS695 LYS696 SER697 LYS698 ILE699 SER700 THR701 TYR702 ASP703 LYS704 MET705 TRP706 ALA707 PHE708 MET709 SER710 SER711 ARG712 ARG713 GLN714 SER715 VAL716 LEU717 VAL718 LYS719 SER720 ASN721 GLU722 GLU723 GLY724 ILE725 GLN726 ARG727 VAL728 LEU729 THR730 SER731 ASP732 TYR733 ALA734 PHE735 LEU736 MET737 GLU738 SER739 THR740 THR741 ILE742 GLU743 PHE744 VAL745 THR746 GLN747 ARG748 ASN749 CYS750 ASN751 LEU752 THR753 GLN754 ILE755 GLY756 GLY757 LEU758 ILE759 ASP760 SER761 LYS762 GLY763 TYR764 GLY765 VAL766 GLY767 THR768 PRO769 MET770 GLY771 SER772 PRO773 TYR774 ARG775 ASP776 LYS777 ILE778 THR779 ILE780 ALA781 ILE782 LEU783 GLN784 LEU785 GLN786 GLU787 GLU788 GLY789 LYS790 LEU791 HIS792 MET793 MET794 LYS795 GLU796 LYS797 TRP798 TRP799 ARG800 GLY801
Unit 6 ASN423 ILE424 THR425 ASP426 SER427 LEU428 SER429 ASN430 ARG431 SER432 LEU433 ILE434 VAL435 THR436 THR437 ILE438 LEU439 GLU440 GLU441 PRO442 TYR443 VAL444 LEU445 PHE446 LYS447 LYS448 SER449 ASP450 LYS451 PRO452 LEU453 TYR454 GLY455 ASN456 ASP457 ARG458 PHE459 GLU460 GLY461 TYR462 CYS463 ILE464 ASP465 LEU466 LEU467 ARG468 GLU469 LEU470 SER471 THR472 ILE473 LEU474 GLY475 PHE476 THR477 TYR478 GLU479 ILE480 ARG481 LEU482 VAL483 GLU484 ASP485 GLY486 LYS487 TYR488 GLY489 ALA490 GLN491 ASP492 ASP493 VAL494 ASN495 GLY496 GLN497 TRP498 ASN499 GLY500 MET501 VAL502 ARG503 GLU504 LEU505 ILE506 ASP511 LEU512 ALA513 VAL514 ALA515 PRO516 LEU517 ALA518 ILE519 THR520 TYR521 VAL522 ARG523 GLU524 LYS525 ILE527 ASP528 PHE529 SER530 LYS531 PRO532 PHE533 MET534 THR535 LEU536 GLY537 ILE538 SER539 ILE540 LEU541 TYR542 ILE680 GLU681 TYR682 GLY683 ALA684 VAL685 GLU686 ASP687 GLY688 ALA689 THR690 MET691 THR692 PHE693 PHE694 LYS704 MET705 TRP706 ALA707 PHE708 MET709 SER710 SER711 ARG712 ARG713 GLN714 SER715 LEU717 VAL718 LYS719 SER720 ASN721 GLU722 GLU723 GLY724 ILE725 GLN726 ARG727 VAL728 LEU729 THR730 SER731 ASP732 TYR733 ALA734 PHE735 LEU736 MET737 GLU738 SER739 THR740 THR741 ILE742 GLU743 PHE744 VAL745 THR746 GLN747 ARG748 ASN749 CYS750 ASN751 LEU752 THR753 GLN754 ILE755 GLY756 GLY757 LEU758 ILE759 ASP760 SER761 LYS762 GLY763 TYR764 GLY765 VAL766 GLY767 THR768 PRO769 MET770 GLY771 SER772 PRO773 TYR774 ARG775 ASP776 LYS777 ILE778 THR779 ILE780 ALA781 ILE782 LEU783 GLN784 LEU785 GLN786 GLU787 GLU788 GLY789 LYS790 LEU791 HIS792 MET793 MET794 LYS795 GLU796 LYS797 TRP798 TRP799 ARG800
Ligands
Unit 7 NAG1 FUC2
Unit 8 DOQ1103
Unit 9 NAG1201 NAG1202 DOQ1203
Unit 10 NAG1301 NAG1302 DOQ1303
Unit 11 NAG1401 NAG1402 DOQ1403
Unit 12 NAG1501 NAG1502 DOQ1503
Unit 13 NAG1601 DOQ1603
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany