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Sequence, Chains, Asymmetric and Biological Units

Title SUMO E1 ACTIVATING ENZYME SAE1-SAE2-SUMO1-MG-ATP COMPLEX
Keywords SUMO; E1; HETERODIMER; ACTIVATING ENZYME; UBL, LIGASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1Y8R     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   UBIQUITIN-LIKE 1 ACTIVATING ENZYME E1A  A 314 2462 0
2  Protein   UBIQUITIN-LIKE 2 ACTIVATING ENZYME E1B  B 512 4022 0
3  Protein   UBIQUITIN-LIKE PROTEIN SMT3C  C 84 680 0
4  Protein   UBIQUITIN-LIKE 1 ACTIVATING ENZYME E1A  D 311 2437 0
5  Protein   UBIQUITIN-LIKE 2 ACTIVATING ENZYME E1B  E 514 4031 0
6  Protein   UBIQUITIN-LIKE PROTEIN SMT3C  F 84 680 0
7  Ligand   UBIQUITIN-LIKE 2 ACTIVATING ENZYME E1B  B 3 0 33
8  Ligand   UBIQUITIN-LIKE 2 ACTIVATING ENZYME E1B  E 3 0 33
9 Water     317 0 317
total       2142 14312 383
Proteins
Unit 1 GLY9 GLY10 ILE11 SER12 GLU13 GLU14 GLU15 ALA16 ALA17 GLN18 TYR19 ASP20 ARG21 GLN22 ILE23 ARG24 LEU25 TRP26 GLY27 LEU28 GLU29 ALA30 GLN31 LYS32 ARG33 LEU34 ARG35 ALA36 SER37 ARG38 VAL39 LEU40 LEU41 VAL42 GLY43 LEU44 LYS45 GLY46 LEU47 GLY48 ALA49 GLU50 ILE51 ALA52 LYS53 ASN54 LEU55 ILE56 LEU57 ALA58 GLY59 VAL60 LYS61 GLY62 LEU63 THR64 MET65 LEU66 ASP67 HIS68 GLU69 GLN70 VAL71 THR72 PRO73 GLU74 ASP75 PRO76 GLY77 ALA78 GLN79 PHE80 LEU81 ILE82 ARG83 THR84 GLY85 SER86 VAL87 GLY88 ARG89 ASN90 ARG91 ALA92 GLU93 ALA94 SER95 LEU96 GLU97 ARG98 ALA99 GLN100 ASN101 LEU102 ASN103 PRO104 MET105 VAL106 ASP107 VAL108 LYS109 VAL110 ASP111 THR112 GLU113 ASP114 ILE115 GLU116 LYS117 LYS118 PRO119 GLU120 SER121 PHE122 PHE123 THR124 GLN125 PHE126 ASP127 ALA128 VAL129 CYS130 LEU131 THR132 CYS133 CYS134 SER135 ARG136 ASP137 VAL138 ILE139 VAL140 LYS141 VAL142 ASP143 GLN144 ILE145 CYS146 HIS147 LYS148 ASN149 SER150 ILE151 LYS152 PHE153 PHE154 THR155 GLY156 ASP157 VAL158 PHE159 GLY160 TYR161 HIS162 GLY163 TYR164 THR165 PHE166 ALA167 ASN168 LEU169 GLY170 GLU171 HIS172 GLU173 PHE174 VAL175 GLU176 GLU177 LYS178 THR179 GLU203 THR204 THR205 MET206 VAL207 LYS208 LYS209 LYS210 VAL211 VAL212 PHE213 CYS214 PRO215 VAL216 LYS217 GLU218 ALA219 LEU220 GLU221 VAL222 ASP223 TRP224 SER225 SER226 GLU227 LYS228 ALA229 LYS230 ALA231 ALA232 LEU233 LYS234 ARG235 THR236 THR237 SER238 ASP239 TYR240 PHE241 LEU242 LEU243 GLN244 VAL245 LEU246 LEU247 LYS248 PHE249 ARG250 THR251 ASP252 LYS253 GLY254 ARG255 ASP256 PRO257 SER258 SER259 ASP260 THR261 TYR262 GLU263 GLU264 ASP265 SER266 GLU267 LEU268 LEU269 LEU270 GLN271 ILE272 ARG273 ASN274 ASP275 VAL276 LEU277 ASP278 SER279 LEU280 GLY281 ILE282 SER283 PRO284 ASP285 LEU286 LEU287 PRO288 GLU289 ASP290 PHE291 VAL292 ARG293 TYR294 CYS295 PHE296 SER297 GLU298 MET299 ALA300 PRO301 VAL302 CYS303 ALA304 VAL305 VAL306 GLY307 GLY308 ILE309 LEU310 ALA311 GLN312 GLU313 ILE314 VAL315 LYS316 ALA317 LEU318 SER319 GLN320 ARG321 ASP322 PRO323 PRO324 HIS325 ASN326 ASN327 PHE328 PHE329 PHE330 PHE331 ASP332 GLY333 MET334 LYS335 GLY336 ASN337 GLY338 ILE339 VAL340 GLU341 CYS342 LEU343 GLY344 PRO345
Unit 2 SER4 ARG5 GLY6 LEU7 PRO8 ARG9 GLU10 LEU11 ALA12 GLU13 ALA14 VAL15 ALA16 GLY17 GLY18 ARG19 VAL20 LEU21 VAL22 VAL23 GLY24 ALA25 GLY26 GLY27 ILE28 GLY29 CYS30 GLU31 LEU32 LEU33 LYS34 ASN35 LEU36 VAL37 LEU38 THR39 GLY40 PHE41 SER42 HIS43 ILE44 ASP45 LEU46 ILE47 ASP48 LEU49 ASP50 THR51 ILE52 ASP53 VAL54 SER55 ASN56 LEU57 ASN58 ARG59 GLN60 PHE61 LEU62 PHE63 GLN64 LYS65 LYS66 HIS67 VAL68 GLY69 ARG70 SER71 LYS72 ALA73 GLN74 VAL75 ALA76 LYS77 GLU78 SER79 VAL80 LEU81 GLN82 PHE83 TYR84 PRO85 LYS86 ALA87 ASN88 ILE89 VAL90 ALA91 TYR92 HIS93 ASP94 SER95 ILE96 MET97 ASN98 PRO99 ASP100 TYR101 ASN102 VAL103 GLU104 PHE105 PHE106 ARG107 GLN108 PHE109 ILE110 LEU111 VAL112 MET113 ASN114 ALA115 LEU116 ASP117 ASN118 ARG119 ALA120 ALA121 ARG122 ASN123 HIS124 VAL125 ASN126 ARG127 MET128 CYS129 LEU130 ALA131 ALA132 ASP133 VAL134 PRO135 LEU136 ILE137 GLU138 SER139 GLY140 THR141 ALA142 GLY143 TYR144 LEU145 GLY146 GLN147 VAL148 THR149 THR150 ILE151 LYS152 LYS153 GLY154 VAL155 THR156 GLU157 CYS158 TYR159 GLU160 CYS161 HIS162 PRO163 LYS164 PRO165 THR166 GLN167 ARG168 THR169 PHE170 PRO171 GLY172 ALA173 THR174 ILE175 ARG176 ASN177 THR178 PRO179 SER180 GLU181 PRO182 ILE183 HIS184 CYS185 ILE186 VAL187 TRP188 ALA189 LYS190 TYR191 LEU192 PHE193 ASN194 GLN195 LEU196 PHE197 GLY198 GLU199 GLU200 ASP201 ALA202 ASP203 GLN204 GLU205 VAL206 SER207 PRO208 ASP209 ARG210 ALA211 ASP212 PRO213 GLU214 ALA215 ALA216 TRP217 GLU218 THR240 LYS241 GLU242 TRP243 ALA244 LYS245 SER246 THR247 GLY248 TYR249 ASP250 PRO251 VAL252 LYS253 LEU254 PHE255 THR256 LYS257 LEU258 PHE259 LYS260 ASP261 ASP262 ILE263 ARG264 TYR265 LEU266 LEU267 THR268 MET269 ASP270 LYS271 LEU272 TRP273 ARG274 LYS275 ARG276 LYS277 PRO278 PRO279 VAL280 PRO281 LEU282 ASP283 TRP284 ALA285 GLU286 VAL287 GLN288 SER289 GLN290 LEU305 GLY306 LEU307 LYS308 ASP309 GLN310 GLN311 VAL312 LEU313 ASP314 VAL315 LYS316 SER317 TYR318 ALA319 ARG320 LEU321 PHE322 SER323 LYS324 SER325 ILE326 GLU327 THR328 LEU329 ARG330 VAL331 HIS332 LEU333 ALA334 GLU335 LYS336 GLY337 ASP338 GLY339 ALA340 GLU341 LEU342 ILE343 TRP344 ASP345 LYS346 ASP347 ASP348 PRO349 SER350 ALA351 MET352 ASP353 PHE354 VAL355 THR356 SER357 ALA358 ALA359 ASN360 LEU361 ARG362 MET363 HIS364 ILE365 PHE366 SER367 MET368 ASN369 MET370 LYS371 SER372 ARG373 PHE374 ASP375 ILE376 LYS377 SER378 MET379 ALA380 GLY381 ASN382 ILE383 ILE384 PRO385 ALA386 ILE387 ALA388 THR389 THR390 ASN391 ALA392 VAL393 ILE394 ALA395 GLY396 LEU397 ILE398 VAL399 LEU400 GLU401 GLY402 LEU403 LYS404 ILE405 LEU406 SER407 GLY408 LYS409 ILE410 ASP411 GLN412 CYS413 ARG414 THR415 ILE416 PHE417 LEU418 ASN419 LYS420 GLN421 PRO422 ASN423 PRO424 ARG425 LYS426 LYS427 LEU428 LEU429 VAL430 PRO431 CYS432 ALA433 LEU434 ASP435 PRO436 PRO437 ASN438 PRO439 ASN440 CYS441 TYR442 VAL443 CYS444 ALA445 SER446 LYS447 PRO448 GLU449 VAL450 THR451 VAL452 ARG453 LEU454 ASN455 VAL456 HIS457 LYS458 VAL459 THR460 VAL461 LEU462 THR463 LEU464 GLN465 ASP466 LYS467 ILE468 VAL469 LYS470 GLU471 LYS472 PHE473 ALA474 MET475 VAL476 ALA477 PRO478 ASP479 VAL480 GLN481 ILE482 GLU483 ASP484 GLY485 LYS486 GLY487 THR488 ILE489 LEU490 ILE491 SER492 SER493 GLU494 GLU495 GLY496 GLU497 THR498 GLU499 ALA500 ASN501 ASN502 HIS503 LYS504 LYS505 LEU506 SER507 GLU508 PHE509 GLY510 ILE511 ARG512 ASN513 GLY514 SER515 ARG516 LEU517 GLN518 ALA519 ASP520 ASP521 PHE522 LEU523 GLN524 ASP525 TYR526 THR527 LEU528 LEU529 ILE530 ASN531 ILE532 LEU533 HIS534 SER535 GLU536 ASP537 LEU538 GLY539 LYS540 ASP541 VAL542 GLU543 PHE544 GLU545 VAL546 VAL547 GLY548 ASP549 ALA550
Unit 3 GLY14 ASP15 LYS16 LYS17 GLU18 GLY19 GLU20 TYR21 ILE22 LYS23 LEU24 LYS25 VAL26 ILE27 GLY28 GLN29 ASP30 SER31 SER32 GLU33 ILE34 HIS35 PHE36 LYS37 VAL38 LYS39 MET40 THR41 THR42 HIS43 LEU44 LYS45 LYS46 LEU47 LYS48 GLU49 SER50 TYR51 CYS52 GLN53 ARG54 GLN55 GLY56 VAL57 PRO58 MET59 ASN60 SER61 LEU62 ARG63 PHE64 LEU65 PHE66 GLU67 GLY68 GLN69 ARG70 ILE71 ALA72 ASP73 ASN74 HIS75 THR76 PRO77 LYS78 GLU79 LEU80 GLY81 MET82 GLU83 GLU84 GLU85 ASP86 VAL87 ILE88 GLU89 VAL90 TYR91 GLN92 GLU93 GLN94 THR95 GLY96 GLY97
Unit 4 GLY9 GLY10 ILE11 SER12 GLU13 GLU14 GLU15 ALA16 ALA17 GLN18 TYR19 ASP20 ARG21 GLN22 ILE23 ARG24 LEU25 TRP26 GLY27 LEU28 GLU29 ALA30 GLN31 LYS32 ARG33 LEU34 ARG35 ALA36 SER37 ARG38 VAL39 LEU40 LEU41 VAL42 GLY43 LEU44 LYS45 GLY46 LEU47 GLY48 ALA49 GLU50 ILE51 ALA52 LYS53 ASN54 LEU55 ILE56 LEU57 ALA58 GLY59 VAL60 LYS61 GLY62 LEU63 THR64 MET65 LEU66 ASP67 HIS68 GLU69 GLN70 VAL71 THR72 PRO73 GLU74 ASP75 PRO76 GLY77 ALA78 GLN79 PHE80 LEU81 ILE82 ARG83 THR84 GLY85 SER86 VAL87 GLY88 ARG89 ASN90 ARG91 ALA92 GLU93 ALA94 SER95 LEU96 GLU97 ARG98 ALA99 GLN100 ASN101 LEU102 ASN103 PRO104 MET105 VAL106 ASP107 VAL108 LYS109 VAL110 ASP111 THR112 GLU113 ASP114 ILE115 GLU116 LYS117 LYS118 PRO119 GLU120 SER121 PHE122 PHE123 THR124 GLN125 PHE126 ASP127 ALA128 VAL129 CYS130 LEU131 THR132 CYS133 CYS134 SER135 ARG136 ASP137 VAL138 ILE139 VAL140 LYS141 VAL142 ASP143 GLN144 ILE145 CYS146 HIS147 LYS148 ASN149 SER150 ILE151 LYS152 PHE153 PHE154 THR155 GLY156 ASP157 VAL158 PHE159 GLY160 TYR161 HIS162 GLY163 TYR164 THR165 PHE166 ALA167 ASN168 LEU169 GLY170 GLU171 HIS172 GLU173 PHE174 VAL175 GLU176 GLU177 THR204 THR205 MET206 VAL207 LYS208 LYS209 LYS210 VAL211 VAL212 PHE213 CYS214 PRO215 VAL216 LYS217 GLU218 ALA219 LEU220 GLU221 VAL222 ASP223 TRP224 SER225 SER226 GLU227 LYS228 ALA229 LYS230 ALA231 ALA232 LEU233 LYS234 ARG235 THR236 THR237 SER238 ASP239 TYR240 PHE241 LEU242 LEU243 GLN244 VAL245 LEU246 LEU247 LYS248 PHE249 ARG250 THR251 ASP252 LYS253 GLY254 ARG255 ASP256 PRO257 SER258 SER259 ASP260 THR261 TYR262 GLU263 GLU264 ASP265 SER266 GLU267 LEU268 LEU269 LEU270 GLN271 ILE272 ARG273 ASN274 ASP275 VAL276 LEU277 ASP278 SER279 LEU280 GLY281 ILE282 SER283 PRO284 ASP285 LEU286 LEU287 PRO288 GLU289 ASP290 PHE291 VAL292 ARG293 TYR294 CYS295 PHE296 SER297 GLU298 MET299 ALA300 PRO301 VAL302 CYS303 ALA304 VAL305 VAL306 GLY307 GLY308 ILE309 LEU310 ALA311 GLN312 GLU313 ILE314 VAL315 LYS316 ALA317 LEU318 SER319 GLN320 ARG321 ASP322 PRO323 PRO324 HIS325 ASN326 ASN327 PHE328 PHE329 PHE330 PHE331 ASP332 GLY333 MET334 LYS335 GLY336 ASN337 GLY338 ILE339 VAL340 GLU341 CYS342 LEU343 GLY344 PRO345
Unit 5 SER4 ARG5 GLY6 LEU7 PRO8 ARG9 GLU10 LEU11 ALA12 GLU13 ALA14 VAL15 ALA16 GLY17 GLY18 ARG19 VAL20 LEU21 VAL22 VAL23 GLY24 ALA25 GLY26 GLY27 ILE28 GLY29 CYS30 GLU31 LEU32 LEU33 LYS34 ASN35 LEU36 VAL37 LEU38 THR39 GLY40 PHE41 SER42 HIS43 ILE44 ASP45 LEU46 ILE47 ASP48 LEU49 ASP50 THR51 ILE52 ASP53 VAL54 SER55 ASN56 LEU57 ASN58 ARG59 GLN60 PHE61 LEU62 PHE63 GLN64 LYS65 LYS66 HIS67 VAL68 GLY69 ARG70 SER71 LYS72 ALA73 GLN74 VAL75 ALA76 LYS77 GLU78 SER79 VAL80 LEU81 GLN82 PHE83 TYR84 PRO85 LYS86 ALA87 ASN88 ILE89 VAL90 ALA91 TYR92 HIS93 ASP94 SER95 ILE96 MET97 ASN98 PRO99 ASP100 TYR101 ASN102 VAL103 GLU104 PHE105 PHE106 ARG107 GLN108 PHE109 ILE110 LEU111 VAL112 MET113 ASN114 ALA115 LEU116 ASP117 ASN118 ARG119 ALA120 ALA121 ARG122 ASN123 HIS124 VAL125 ASN126 ARG127 MET128 CYS129 LEU130 ALA131 ALA132 ASP133 VAL134 PRO135 LEU136 ILE137 GLU138 SER139 GLY140 THR141 ALA142 GLY143 TYR144 LEU145 GLY146 GLN147 VAL148 THR149 THR150 ILE151 LYS152 LYS153 GLY154 VAL155 THR156 GLU157 CYS158 TYR159 GLU160 CYS161 HIS162 PRO163 LYS164 PRO165 THR166 GLN167 ARG168 THR169 PHE170 PRO171 GLY172 ALA173 THR174 ILE175 ARG176 ASN177 THR178 PRO179 SER180 GLU181 PRO182 ILE183 HIS184 CYS185 ILE186 VAL187 TRP188 ALA189 LYS190 TYR191 LEU192 PHE193 ASN194 GLN195 LEU196 PHE197 GLY198 GLU199 GLU200 ASP201 ALA202 ASP203 GLN204 GLU205 VAL206 SER207 PRO208 ASP209 ARG210 ALA211 ASP212 PRO213 GLU214 ALA215 ALA216 TRP217 GLU218 ILE238 SER239 THR240 LYS241 GLU242 TRP243 ALA244 LYS245 SER246 THR247 GLY248 TYR249 ASP250 PRO251 VAL252 LYS253 LEU254 PHE255 THR256 LYS257 LEU258 PHE259 LYS260 ASP261 ASP262 ILE263 ARG264 TYR265 LEU266 LEU267 THR268 MET269 ASP270 LYS271 LEU272 TRP273 ARG274 LYS275 ARG276 LYS277 PRO278 PRO279 VAL280 PRO281 LEU282 ASP283 TRP284 ALA285 GLU286 VAL287 GLN288 SER289 GLN290 LEU305 GLY306 LEU307 LYS308 ASP309 GLN310 GLN311 VAL312 LEU313 ASP314 VAL315 LYS316 SER317 TYR318 ALA319 ARG320 LEU321 PHE322 SER323 LYS324 SER325 ILE326 GLU327 THR328 LEU329 ARG330 VAL331 HIS332 LEU333 ALA334 GLU335 LYS336 GLY337 ASP338 GLY339 ALA340 GLU341 LEU342 ILE343 TRP344 ASP345 LYS346 ASP347 ASP348 PRO349 SER350 ALA351 MET352 ASP353 PHE354 VAL355 THR356 SER357 ALA358 ALA359 ASN360 LEU361 ARG362 MET363 HIS364 ILE365 PHE366 SER367 MET368 ASN369 MET370 LYS371 SER372 ARG373 PHE374 ASP375 ILE376 LYS377 SER378 MET379 ALA380 GLY381 ASN382 ILE383 ILE384 PRO385 ALA386 ILE387 ALA388 THR389 THR390 ASN391 ALA392 VAL393 ILE394 ALA395 GLY396 LEU397 ILE398 VAL399 LEU400 GLU401 GLY402 LEU403 LYS404 ILE405 LEU406 SER407 GLY408 LYS409 ILE410 ASP411 GLN412 CYS413 ARG414 THR415 ILE416 PHE417 LEU418 ASN419 LYS420 GLN421 PRO422 ASN423 PRO424 ARG425 LYS426 LYS427 LEU428 LEU429 VAL430 PRO431 CYS432 ALA433 LEU434 ASP435 PRO436 PRO437 ASN438 PRO439 ASN440 CYS441 TYR442 VAL443 CYS444 ALA445 SER446 LYS447 PRO448 GLU449 VAL450 THR451 VAL452 ARG453 LEU454 ASN455 VAL456 HIS457 LYS458 VAL459 THR460 VAL461 LEU462 THR463 LEU464 GLN465 ASP466 LYS467 ILE468 VAL469 LYS470 GLU471 LYS472 PHE473 ALA474 MET475 VAL476 ALA477 PRO478 ASP479 VAL480 GLN481 ILE482 GLU483 ASP484 GLY485 LYS486 GLY487 THR488 ILE489 LEU490 ILE491 SER492 SER493 GLU494 GLU495 GLY496 GLU497 THR498 GLU499 ALA500 ASN501 ASN502 HIS503 LYS504 LYS505 LEU506 SER507 GLU508 PHE509 GLY510 ILE511 ARG512 ASN513 GLY514 SER515 ARG516 LEU517 GLN518 ALA519 ASP520 ASP521 PHE522 LEU523 GLN524 ASP525 TYR526 THR527 LEU528 LEU529 ILE530 ASN531 ILE532 LEU533 HIS534 SER535 GLU536 ASP537 LEU538 GLY539 LYS540 ASP541 VAL542 GLU543 PHE544 GLU545 VAL546 VAL547 GLY548 ASP549 ALA550
Unit 6 GLY14 ASP15 LYS16 LYS17 GLU18 GLY19 GLU20 TYR21 ILE22 LYS23 LEU24 LYS25 VAL26 ILE27 GLY28 GLN29 ASP30 SER31 SER32 GLU33 ILE34 HIS35 PHE36 LYS37 VAL38 LYS39 MET40 THR41 THR42 HIS43 LEU44 LYS45 LYS46 LEU47 LYS48 GLU49 SER50 TYR51 CYS52 GLN53 ARG54 GLN55 GLY56 VAL57 PRO58 MET59 ASN60 SER61 LEU62 ARG63 PHE64 LEU65 PHE66 GLU67 GLY68 GLN69 ARG70 ILE71 ALA72 ASP73 ASN74 HIS75 THR76 PRO77 LYS78 GLU79 LEU80 GLY81 MET82 GLU83 GLU84 GLU85 ASP86 VAL87 ILE88 GLU89 VAL90 TYR91 GLN92 GLU93 GLN94 THR95 GLY96 GLY97
Ligands
Unit 7 MG641 ZN642 ATP802
Unit 8 MG641 ZN642 ATP801
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany