1Y7V - Sequence, Chains, Asymmetric and Biological Units

• Title: X-RAY STRUCTURE OF HUMAN ACID-BETA-GLUCOSIDASE COVALENTLY BO CONDURITOL B EPOXIDE
• Keywords: GAUCHER DISEASE, GLUCOSIDASE, GLUCOCEREBROSIDASE, CEREZYME, HYDROLASE, GLYCOSIDASE, SPHINGOLIPID METABOLISM, GLYCOPROTE LYSOSOME, MEMBRANE, DISEASE MUTATION, ALTERNATIVE INITIATIO STRUCTURAL PROTEOMICS CENTER, ISPC, STRUCTURAL GENOMICS
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1Y7V	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	GLUCOSYLCERAMIDASE	A	497	3930	0
2	Protein	GLUCOSYLCERAMIDASE	B	497	3930	0
3	Ligand		C	2	0	28
4	Ligand		D	2	0	28
5	Ligand	GLUCOSYLCERAMIDASE	A	8	0	46
6	Ligand	GLUCOSYLCERAMIDASE	B	7	0	41
7	Water			286	0	286
total				1299	7860	429

Proteins

Unit 1

ALA 1 ARG 2 PRO 3 CYS 4 ILE 5 PRO 6 LYS 7 SER 8 PHE 9 GLY 10 TYR 11 SER 12 SER 13 VAL 14 VAL 15 CYS 16 VAL 17 CYS 18 ASN 19 ALA 20 THR 21 TYR 22 CYS 23 ASP 24 SER 25 PHE 26 ASP 27 PRO 28 PRO 29 THR 30 PHE 31 PRO 32 ALA 33 LEU 34 GLY 35 THR 36 PHE 37 SER 38 ARG 39 TYR 40 GLU 41 SER 42 THR 43 ARG 44 SER 45 GLY 46 ARG 47 ARG 48 MET 49 GLU 50 LEU 51 SER 52 MET 53 GLY 54 PRO 55 ILE 56 GLN 57 ALA 58 ASN 59 HIS 60 THR 61 GLY 62 THR 63 GLY 64 LEU 65 LEU 66 LEU 67 THR 68 LEU 69 GLN 70 PRO 71 GLU 72 GLN 73 LYS 74 PHE 75 GLN 76 LYS 77 VAL 78 LYS 79 GLY 80 PHE 81 GLY 82 GLY 83 ALA 84 MET 85 THR 86 ASP 87 ALA 88 ALA 89 ALA 90 LEU 91 ASN 92 ILE 93 LEU 94 ALA 95 LEU 96 SER 97 PRO 98 PRO 99 ALA 100 GLN 101 ASN 102 LEU 103 LEU 104 LEU 105 LYS 106 SER 107 TYR 108 PHE 109 SER 110 GLU 111 GLU 112 GLY 113 ILE 114 GLY 115 TYR 116 ASN 117 ILE 118 ILE 119 ARG 120 VAL 121 PRO 122 MET 123 ALA 124 SER 125 CYS 126 ASP 127 PHE 128 SER 129 ILE 130 ARG 131 THR 132 TYR 133 THR 134 TYR 135 ALA 136 ASP 137 THR 138 PRO 139 ASP 140 ASP 141 PHE 142 GLN 143 LEU 144 HIS 145 ASN 146 PHE 147 SER 148 LEU 149 PRO 150 GLU 151 GLU 152 ASP 153 THR 154 LYS 155 LEU 156 LYS 157 ILE 158 PRO 159 LEU 160 ILE 161 HIS 162 ARG 163 ALA 164 LEU 165 GLN 166 LEU 167 ALA 168 GLN 169 ARG 170 PRO 171 VAL 172 SER 173 LEU 174 LEU 175 ALA 176 SER 177 PRO 178 TRP 179 THR 180 SER 181 PRO 182 THR 183 TRP 184 LEU 185 LYS 186 THR 187 ASN 188 GLY 189 ALA 190 VAL 191 ASN 192 GLY 193 LYS 194 GLY 195 SER 196 LEU 197 LYS 198 GLY 199 GLN 200 PRO 201 GLY 202 ASP 203 ILE 204 TYR 205 HIS 206 GLN 207 THR 208 TRP 209 ALA 210 ARG 211 TYR 212 PHE 213 VAL 214 LYS 215 PHE 216 LEU 217 ASP 218 ALA 219 TYR 220 ALA 221 GLU 222 HIS 223 LYS 224 LEU 225 GLN 226 PHE 227 TRP 228 ALA 229 VAL 230 THR 231 ALA 232 GLU 233 ASN 234 GLU 235 PRO 236 SER 237 ALA 238 GLY 239 LEU 240 LEU 241 SER 242 GLY 243 TYR 244 PRO 245 PHE 246 GLN 247 CYS 248 LEU 249 GLY 250 PHE 251 THR 252 PRO 253 GLU 254 HIS 255 GLN 256 ARG 257 ASP 258 PHE 259 ILE 260 ALA 261 ARG 262 ASP 263 LEU 264 GLY 265 PRO 266 THR 267 LEU 268 ALA 269 ASN 270 SER 271 THR 272 HIS 273 HIS 274 ASN 275 VAL 276 ARG 277 LEU 278 LEU 279 MET 280 LEU 281 ASP 282 ASP 283 GLN 284 ARG 285 LEU 286 LEU 287 LEU 288 PRO 289 HIS 290 TRP 291 ALA 292 LYS 293 VAL 294 VAL 295 LEU 296 THR 297 ASP 298 PRO 299 GLU 300 ALA 301 ALA 302 LYS 303 TYR 304 VAL 305 HIS 306 GLY 307 ILE 308 ALA 309 VAL 310 HIS 311 TRP 312 TYR 313 LEU 314 ASP 315 PHE 316 LEU 317 ALA 318 PRO 319 ALA 320 LYS 321 ALA 322 THR 323 LEU 324 GLY 325 GLU 326 THR 327 HIS 328 ARG 329 LEU 330 PHE 331 PRO 332 ASN 333 THR 334 MET 335 LEU 336 PHE 337 ALA 338 SER 339 GLU 340 ALA 341 CYS 342 VAL 343 GLY 344 SER 345 LYS 346 PHE 347 TRP 348 GLU 349 GLN 350 SER 351 VAL 352 ARG 353 LEU 354 GLY 355 SER 356 TRP 357 ASP 358 ARG 359 GLY 360 MET 361 GLN 362 TYR 363 SER 364 HIS 365 SER 366 ILE 367 ILE 368 THR 369 ASN 370 LEU 371 LEU 372 TYR 373 HIS 374 VAL 375 VAL 376 GLY 377 TRP 378 THR 379 ASP 380 TRP 381 ASN 382 LEU 383 ALA 384 LEU 385 ASN 386 PRO 387 GLU 388 GLY 389 GLY 390 PRO 391 ASN 392 TRP 393 VAL 394 ARG 395 ASN 396 PHE 397 VAL 398 ASP 399 SER 400 PRO 401 ILE 402 ILE 403 VAL 404 ASP 405 ILE 406 THR 407 LYS 408 ASP 409 THR 410 PHE 411 TYR 412 LYS 413 GLN 414 PRO 415 MET 416 PHE 417 TYR 418 HIS 419 LEU 420 GLY 421 HIS 422 PHE 423 SER 424 LYS 425 PHE 426 ILE 427 PRO 428 GLU 429 GLY 430 SER 431 GLN 432 ARG 433 VAL 434 GLY 435 LEU 436 VAL 437 ALA 438 SER 439 GLN 440 LYS 441 ASN 442 ASP 443 LEU 444 ASP 445 ALA 446 VAL 447 ALA 448 LEU 449 MET 450 HIS 451 PRO 452 ASP 453 GLY 454 SER 455 ALA 456 VAL 457 VAL 458 VAL 459 VAL 460 LEU 461 ASN 462 ARG 463 SER 464 SER 465 LYS 466 ASP 467 VAL 468 PRO 469 LEU 470 THR 471 ILE 472 LYS 473 ASP 474 PRO 475 ALA 476 VAL 477 GLY 478 PHE 479 LEU 480 GLU 481 THR 482 ILE 483 SER 484 PRO 485 GLY 486 TYR 487 SER 488 ILE 489 HIS 490 THR 491 TYR 492 LEU 493 TRP 494 HIS 495 ARG 496 GLN 497

Unit 2

ALA 1 ARG 2 PRO 3 CYS 4 ILE 5 PRO 6 LYS 7 SER 8 PHE 9 GLY 10 TYR 11 SER 12 SER 13 VAL 14 VAL 15 CYS 16 VAL 17 CYS 18 ASN 19 ALA 20 THR 21 TYR 22 CYS 23 ASP 24 SER 25 PHE 26 ASP 27 PRO 28 PRO 29 THR 30 PHE 31 PRO 32 ALA 33 LEU 34 GLY 35 THR 36 PHE 37 SER 38 ARG 39 TYR 40 GLU 41 SER 42 THR 43 ARG 44 SER 45 GLY 46 ARG 47 ARG 48 MET 49 GLU 50 LEU 51 SER 52 MET 53 GLY 54 PRO 55 ILE 56 GLN 57 ALA 58 ASN 59 HIS 60 THR 61 GLY 62 THR 63 GLY 64 LEU 65 LEU 66 LEU 67 THR 68 LEU 69 GLN 70 PRO 71 GLU 72 GLN 73 LYS 74 PHE 75 GLN 76 LYS 77 VAL 78 LYS 79 GLY 80 PHE 81 GLY 82 GLY 83 ALA 84 MET 85 THR 86 ASP 87 ALA 88 ALA 89 ALA 90 LEU 91 ASN 92 ILE 93 LEU 94 ALA 95 LEU 96 SER 97 PRO 98 PRO 99 ALA 100 GLN 101 ASN 102 LEU 103 LEU 104 LEU 105 LYS 106 SER 107 TYR 108 PHE 109 SER 110 GLU 111 GLU 112 GLY 113 ILE 114 GLY 115 TYR 116 ASN 117 ILE 118 ILE 119 ARG 120 VAL 121 PRO 122 MET 123 ALA 124 SER 125 CYS 126 ASP 127 PHE 128 SER 129 ILE 130 ARG 131 THR 132 TYR 133 THR 134 TYR 135 ALA 136 ASP 137 THR 138 PRO 139 ASP 140 ASP 141 PHE 142 GLN 143 LEU 144 HIS 145 ASN 146 PHE 147 SER 148 LEU 149 PRO 150 GLU 151 GLU 152 ASP 153 THR 154 LYS 155 LEU 156 LYS 157 ILE 158 PRO 159 LEU 160 ILE 161 HIS 162 ARG 163 ALA 164 LEU 165 GLN 166 LEU 167 ALA 168 GLN 169 ARG 170 PRO 171 VAL 172 SER 173 LEU 174 LEU 175 ALA 176 SER 177 PRO 178 TRP 179 THR 180 SER 181 PRO 182 THR 183 TRP 184 LEU 185 LYS 186 THR 187 ASN 188 GLY 189 ALA 190 VAL 191 ASN 192 GLY 193 LYS 194 GLY 195 SER 196 LEU 197 LYS 198 GLY 199 GLN 200 PRO 201 GLY 202 ASP 203 ILE 204 TYR 205 HIS 206 GLN 207 THR 208 TRP 209 ALA 210 ARG 211 TYR 212 PHE 213 VAL 214 LYS 215 PHE 216 LEU 217 ASP 218 ALA 219 TYR 220 ALA 221 GLU 222 HIS 223 LYS 224 LEU 225 GLN 226 PHE 227 TRP 228 ALA 229 VAL 230 THR 231 ALA 232 GLU 233 ASN 234 GLU 235 PRO 236 SER 237 ALA 238 GLY 239 LEU 240 LEU 241 SER 242 GLY 243 TYR 244 PRO 245 PHE 246 GLN 247 CYS 248 LEU 249 GLY 250 PHE 251 THR 252 PRO 253 GLU 254 HIS 255 GLN 256 ARG 257 ASP 258 PHE 259 ILE 260 ALA 261 ARG 262 ASP 263 LEU 264 GLY 265 PRO 266 THR 267 LEU 268 ALA 269 ASN 270 SER 271 THR 272 HIS 273 HIS 274 ASN 275 VAL 276 ARG 277 LEU 278 LEU 279 MET 280 LEU 281 ASP 282 ASP 283 GLN 284 ARG 285 LEU 286 LEU 287 LEU 288 PRO 289 HIS 290 TRP 291 ALA 292 LYS 293 VAL 294 VAL 295 LEU 296 THR 297 ASP 298 PRO 299 GLU 300 ALA 301 ALA 302 LYS 303 TYR 304 VAL 305 HIS 306 GLY 307 ILE 308 ALA 309 VAL 310 HIS 311 TRP 312 TYR 313 LEU 314 ASP 315 PHE 316 LEU 317 ALA 318 PRO 319 ALA 320 LYS 321 ALA 322 THR 323 LEU 324 GLY 325 GLU 326 THR 327 HIS 328 ARG 329 LEU 330 PHE 331 PRO 332 ASN 333 THR 334 MET 335 LEU 336 PHE 337 ALA 338 SER 339 GLU 340 ALA 341 CYS 342 VAL 343 GLY 344 SER 345 LYS 346 PHE 347 TRP 348 GLU 349 GLN 350 SER 351 VAL 352 ARG 353 LEU 354 GLY 355 SER 356 TRP 357 ASP 358 ARG 359 GLY 360 MET 361 GLN 362 TYR 363 SER 364 HIS 365 SER 366 ILE 367 ILE 368 THR 369 ASN 370 LEU 371 LEU 372 TYR 373 HIS 374 VAL 375 VAL 376 GLY 377 TRP 378 THR 379 ASP 380 TRP 381 ASN 382 LEU 383 ALA 384 LEU 385 ASN 386 PRO 387 GLU 388 GLY 389 GLY 390 PRO 391 ASN 392 TRP 393 VAL 394 ARG 395 ASN 396 PHE 397 VAL 398 ASP 399 SER 400 PRO 401 ILE 402 ILE 403 VAL 404 ASP 405 ILE 406 THR 407 LYS 408 ASP 409 THR 410 PHE 411 TYR 412 LYS 413 GLN 414 PRO 415 MET 416 PHE 417 TYR 418 HIS 419 LEU 420 GLY 421 HIS 422 PHE 423 SER 424 LYS 425 PHE 426 ILE 427 PRO 428 GLU 429 GLY 430 SER 431 GLN 432 ARG 433 VAL 434 GLY 435 LEU 436 VAL 437 ALA 438 SER 439 GLN 440 LYS 441 ASN 442 ASP 443 LEU 444 ASP 445 ALA 446 VAL 447 ALA 448 LEU 449 MET 450 HIS 451 PRO 452 ASP 453 GLY 454 SER 455 ALA 456 VAL 457 VAL 458 VAL 459 VAL 460 LEU 461 ASN 462 ARG 463 SER 464 SER 465 LYS 466 ASP 467 VAL 468 PRO 469 LEU 470 THR 471 ILE 472 LYS 473 ASP 474 PRO 475 ALA 476 VAL 477 GLY 478 PHE 479 LEU 480 GLU 481 THR 482 ILE 483 SER 484 PRO 485 GLY 486 TYR 487 SER 488 ILE 489 HIS 490 THR 491 TYR 492 LEU 493 TRP 494 HIS 495 ARG 496 GLN 497

Ligands

Unit 3	NAG 1 NAG 2
Unit 4	NAG 1 NAG 2
Unit 5	SO4 500 SO4 501 SO4 502 SO4 503 SO4 504 SO4 505 SO4 506 INS 507
Unit 6	SO4 500 SO4 501 SO4 502 SO4 503 SO4 504 SO4 505 INS 506