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Title | X-RAY STRUCTURE OF HUMAN ACID-BETA-GLUCOSIDASE COVALENTLY BO CONDURITOL B EPOXIDE | |
Keywords | GAUCHER DISEASE, GLUCOSIDASE, GLUCOCEREBROSIDASE, CEREZYME, HYDROLASE, GLYCOSIDASE, SPHINGOLIPID METABOLISM, GLYCOPROTE LYSOSOME, MEMBRANE, DISEASE MUTATION, ALTERNATIVE INITIATIO STRUCTURAL PROTEOMICS CENTER, ISPC, STRUCTURAL GENOMICS | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 1Y7V | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | GLUCOSYLCERAMIDASE | A | 497 | 3930 | 0 |
2 | Protein | GLUCOSYLCERAMIDASE | B | 497 | 3930 | 0 |
3 | Ligand | C | 2 | 0 | 28 | |
4 | Ligand | D | 2 | 0 | 28 | |
5 | Ligand | GLUCOSYLCERAMIDASE | A | 8 | 0 | 46 |
6 | Ligand | GLUCOSYLCERAMIDASE | B | 7 | 0 | 41 |
7 | Water | 286 | 0 | 286 | ||
total | 1299 | 7860 | 429 |
Unit 1 | ALA1 ARG2 PRO3 CYS4 ILE5 PRO6 LYS7 SER8 PHE9 GLY10 TYR11 SER12 SER13 VAL14 VAL15 CYS16 VAL17 CYS18 ASN19 ALA20 THR21 TYR22 CYS23 ASP24 SER25 PHE26 ASP27 PRO28 PRO29 THR30 PHE31 PRO32 ALA33 LEU34 GLY35 THR36 PHE37 SER38 ARG39 TYR40 GLU41 SER42 THR43 ARG44 SER45 GLY46 ARG47 ARG48 MET49 GLU50 LEU51 SER52 MET53 GLY54 PRO55 ILE56 GLN57 ALA58 ASN59 HIS60 THR61 GLY62 THR63 GLY64 LEU65 LEU66 LEU67 THR68 LEU69 GLN70 PRO71 GLU72 GLN73 LYS74 PHE75 GLN76 LYS77 VAL78 LYS79 GLY80 PHE81 GLY82 GLY83 ALA84 MET85 THR86 ASP87 ALA88 ALA89 ALA90 LEU91 ASN92 ILE93 LEU94 ALA95 LEU96 SER97 PRO98 PRO99 ALA100 GLN101 ASN102 LEU103 LEU104 LEU105 LYS106 SER107 TYR108 PHE109 SER110 GLU111 GLU112 GLY113 ILE114 GLY115 TYR116 ASN117 ILE118 ILE119 ARG120 VAL121 PRO122 MET123 ALA124 SER125 CYS126 ASP127 PHE128 SER129 ILE130 ARG131 THR132 TYR133 THR134 TYR135 ALA136 ASP137 THR138 PRO139 ASP140 ASP141 PHE142 GLN143 LEU144 HIS145 ASN146 PHE147 SER148 LEU149 PRO150 GLU151 GLU152 ASP153 THR154 LYS155 LEU156 LYS157 ILE158 PRO159 LEU160 ILE161 HIS162 ARG163 ALA164 LEU165 GLN166 LEU167 ALA168 GLN169 ARG170 PRO171 VAL172 SER173 LEU174 LEU175 ALA176 SER177 PRO178 TRP179 THR180 SER181 PRO182 THR183 TRP184 LEU185 LYS186 THR187 ASN188 GLY189 ALA190 VAL191 ASN192 GLY193 LYS194 GLY195 SER196 LEU197 LYS198 GLY199 GLN200 PRO201 GLY202 ASP203 ILE204 TYR205 HIS206 GLN207 THR208 TRP209 ALA210 ARG211 TYR212 PHE213 VAL214 LYS215 PHE216 LEU217 ASP218 ALA219 TYR220 ALA221 GLU222 HIS223 LYS224 LEU225 GLN226 PHE227 TRP228 ALA229 VAL230 THR231 ALA232 GLU233 ASN234 GLU235 PRO236 SER237 ALA238 GLY239 LEU240 LEU241 SER242 GLY243 TYR244 PRO245 PHE246 GLN247 CYS248 LEU249 GLY250 PHE251 THR252 PRO253 GLU254 HIS255 GLN256 ARG257 ASP258 PHE259 ILE260 ALA261 ARG262 ASP263 LEU264 GLY265 PRO266 THR267 LEU268 ALA269 ASN270 SER271 THR272 HIS273 HIS274 ASN275 VAL276 ARG277 LEU278 LEU279 MET280 LEU281 ASP282 ASP283 GLN284 ARG285 LEU286 LEU287 LEU288 PRO289 HIS290 TRP291 ALA292 LYS293 VAL294 VAL295 LEU296 THR297 ASP298 PRO299 GLU300 ALA301 ALA302 LYS303 TYR304 VAL305 HIS306 GLY307 ILE308 ALA309 VAL310 HIS311 TRP312 TYR313 LEU314 ASP315 PHE316 LEU317 ALA318 PRO319 ALA320 LYS321 ALA322 THR323 LEU324 GLY325 GLU326 THR327 HIS328 ARG329 LEU330 PHE331 PRO332 ASN333 THR334 MET335 LEU336 PHE337 ALA338 SER339 GLU340 ALA341 CYS342 VAL343 GLY344 SER345 LYS346 PHE347 TRP348 GLU349 GLN350 SER351 VAL352 ARG353 LEU354 GLY355 SER356 TRP357 ASP358 ARG359 GLY360 MET361 GLN362 TYR363 SER364 HIS365 SER366 ILE367 ILE368 THR369 ASN370 LEU371 LEU372 TYR373 HIS374 VAL375 VAL376 GLY377 TRP378 THR379 ASP380 TRP381 ASN382 LEU383 ALA384 LEU385 ASN386 PRO387 GLU388 GLY389 GLY390 PRO391 ASN392 TRP393 VAL394 ARG395 ASN396 PHE397 VAL398 ASP399 SER400 PRO401 ILE402 ILE403 VAL404 ASP405 ILE406 THR407 LYS408 ASP409 THR410 PHE411 TYR412 LYS413 GLN414 PRO415 MET416 PHE417 TYR418 HIS419 LEU420 GLY421 HIS422 PHE423 SER424 LYS425 PHE426 ILE427 PRO428 GLU429 GLY430 SER431 GLN432 ARG433 VAL434 GLY435 LEU436 VAL437 ALA438 SER439 GLN440 LYS441 ASN442 ASP443 LEU444 ASP445 ALA446 VAL447 ALA448 LEU449 MET450 HIS451 PRO452 ASP453 GLY454 SER455 ALA456 VAL457 VAL458 VAL459 VAL460 LEU461 ASN462 ARG463 SER464 SER465 LYS466 ASP467 VAL468 PRO469 LEU470 THR471 ILE472 LYS473 ASP474 PRO475 ALA476 VAL477 GLY478 PHE479 LEU480 GLU481 THR482 ILE483 SER484 PRO485 GLY486 TYR487 SER488 ILE489 HIS490 THR491 TYR492 LEU493 TRP494 HIS495 ARG496 GLN497 |
Unit 2 | ALA1 ARG2 PRO3 CYS4 ILE5 PRO6 LYS7 SER8 PHE9 GLY10 TYR11 SER12 SER13 VAL14 VAL15 CYS16 VAL17 CYS18 ASN19 ALA20 THR21 TYR22 CYS23 ASP24 SER25 PHE26 ASP27 PRO28 PRO29 THR30 PHE31 PRO32 ALA33 LEU34 GLY35 THR36 PHE37 SER38 ARG39 TYR40 GLU41 SER42 THR43 ARG44 SER45 GLY46 ARG47 ARG48 MET49 GLU50 LEU51 SER52 MET53 GLY54 PRO55 ILE56 GLN57 ALA58 ASN59 HIS60 THR61 GLY62 THR63 GLY64 LEU65 LEU66 LEU67 THR68 LEU69 GLN70 PRO71 GLU72 GLN73 LYS74 PHE75 GLN76 LYS77 VAL78 LYS79 GLY80 PHE81 GLY82 GLY83 ALA84 MET85 THR86 ASP87 ALA88 ALA89 ALA90 LEU91 ASN92 ILE93 LEU94 ALA95 LEU96 SER97 PRO98 PRO99 ALA100 GLN101 ASN102 LEU103 LEU104 LEU105 LYS106 SER107 TYR108 PHE109 SER110 GLU111 GLU112 GLY113 ILE114 GLY115 TYR116 ASN117 ILE118 ILE119 ARG120 VAL121 PRO122 MET123 ALA124 SER125 CYS126 ASP127 PHE128 SER129 ILE130 ARG131 THR132 TYR133 THR134 TYR135 ALA136 ASP137 THR138 PRO139 ASP140 ASP141 PHE142 GLN143 LEU144 HIS145 ASN146 PHE147 SER148 LEU149 PRO150 GLU151 GLU152 ASP153 THR154 LYS155 LEU156 LYS157 ILE158 PRO159 LEU160 ILE161 HIS162 ARG163 ALA164 LEU165 GLN166 LEU167 ALA168 GLN169 ARG170 PRO171 VAL172 SER173 LEU174 LEU175 ALA176 SER177 PRO178 TRP179 THR180 SER181 PRO182 THR183 TRP184 LEU185 LYS186 THR187 ASN188 GLY189 ALA190 VAL191 ASN192 GLY193 LYS194 GLY195 SER196 LEU197 LYS198 GLY199 GLN200 PRO201 GLY202 ASP203 ILE204 TYR205 HIS206 GLN207 THR208 TRP209 ALA210 ARG211 TYR212 PHE213 VAL214 LYS215 PHE216 LEU217 ASP218 ALA219 TYR220 ALA221 GLU222 HIS223 LYS224 LEU225 GLN226 PHE227 TRP228 ALA229 VAL230 THR231 ALA232 GLU233 ASN234 GLU235 PRO236 SER237 ALA238 GLY239 LEU240 LEU241 SER242 GLY243 TYR244 PRO245 PHE246 GLN247 CYS248 LEU249 GLY250 PHE251 THR252 PRO253 GLU254 HIS255 GLN256 ARG257 ASP258 PHE259 ILE260 ALA261 ARG262 ASP263 LEU264 GLY265 PRO266 THR267 LEU268 ALA269 ASN270 SER271 THR272 HIS273 HIS274 ASN275 VAL276 ARG277 LEU278 LEU279 MET280 LEU281 ASP282 ASP283 GLN284 ARG285 LEU286 LEU287 LEU288 PRO289 HIS290 TRP291 ALA292 LYS293 VAL294 VAL295 LEU296 THR297 ASP298 PRO299 GLU300 ALA301 ALA302 LYS303 TYR304 VAL305 HIS306 GLY307 ILE308 ALA309 VAL310 HIS311 TRP312 TYR313 LEU314 ASP315 PHE316 LEU317 ALA318 PRO319 ALA320 LYS321 ALA322 THR323 LEU324 GLY325 GLU326 THR327 HIS328 ARG329 LEU330 PHE331 PRO332 ASN333 THR334 MET335 LEU336 PHE337 ALA338 SER339 GLU340 ALA341 CYS342 VAL343 GLY344 SER345 LYS346 PHE347 TRP348 GLU349 GLN350 SER351 VAL352 ARG353 LEU354 GLY355 SER356 TRP357 ASP358 ARG359 GLY360 MET361 GLN362 TYR363 SER364 HIS365 SER366 ILE367 ILE368 THR369 ASN370 LEU371 LEU372 TYR373 HIS374 VAL375 VAL376 GLY377 TRP378 THR379 ASP380 TRP381 ASN382 LEU383 ALA384 LEU385 ASN386 PRO387 GLU388 GLY389 GLY390 PRO391 ASN392 TRP393 VAL394 ARG395 ASN396 PHE397 VAL398 ASP399 SER400 PRO401 ILE402 ILE403 VAL404 ASP405 ILE406 THR407 LYS408 ASP409 THR410 PHE411 TYR412 LYS413 GLN414 PRO415 MET416 PHE417 TYR418 HIS419 LEU420 GLY421 HIS422 PHE423 SER424 LYS425 PHE426 ILE427 PRO428 GLU429 GLY430 SER431 GLN432 ARG433 VAL434 GLY435 LEU436 VAL437 ALA438 SER439 GLN440 LYS441 ASN442 ASP443 LEU444 ASP445 ALA446 VAL447 ALA448 LEU449 MET450 HIS451 PRO452 ASP453 GLY454 SER455 ALA456 VAL457 VAL458 VAL459 VAL460 LEU461 ASN462 ARG463 SER464 SER465 LYS466 ASP467 VAL468 PRO469 LEU470 THR471 ILE472 LYS473 ASP474 PRO475 ALA476 VAL477 GLY478 PHE479 LEU480 GLU481 THR482 ILE483 SER484 PRO485 GLY486 TYR487 SER488 ILE489 HIS490 THR491 TYR492 LEU493 TRP494 HIS495 ARG496 GLN497 |
Unit 3 | NAG1 NAG2 |
Unit 4 | NAG1 NAG2 |
Unit 5 | SO4500 SO4501 SO4502 SO4503 SO4504 SO4505 SO4506 INS507 |
Unit 6 | SO4500 SO4501 SO4502 SO4503 SO4504 SO4505 INS506 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |