1Y56 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF L-PROLINE DEHYDROGENASE FROM P.HORIKOSH
• Keywords: DEHYDROGENASE, PROTEIN-PROTEIN COMPLEX, OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1Y56	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	HYPOTHETICAL PROTEIN PH1363	A	484	3844	0
2	Protein	SARCOSINE OXIDASE	B	374	2961	0
3	Ligand	HYPOTHETICAL PROTEIN PH1363	A	5	0	82
4	Ligand	SARCOSINE OXIDASE	B	2	0	54
5	Water			206	0	206
total				1071	6805	342

Proteins

Unit 1

MET 1 ARG 2 PRO 3 LEU 4 ASP 5 LEU 6 THR 7 GLU 8 LYS 9 ARG 10 GLY 11 LYS 12 LYS 13 VAL 14 THR 15 ILE 16 TYR 17 PHE 18 GLU 19 GLY 20 LYS 21 GLU 22 LEU 23 GLU 24 ALA 25 TYR 26 GLU 27 GLY 28 GLU 29 LYS 30 LEU 31 PRO 32 VAL 33 ALA 34 LEU 35 LEU 36 ALA 37 ASN 38 GLU 39 ILE 40 TYR 41 TRP 42 LEU 43 THR 44 THR 45 SER 46 ASN 47 GLU 48 GLY 49 ARG 50 LYS 51 ARG 52 GLY 53 ALA 54 PHE 55 THR 56 PHE 57 GLY 58 PRO 59 VAL 60 PRO 61 MET 62 THR 63 VAL 64 ASN 65 GLY 66 VAL 67 LYS 68 GLY 69 LEU 70 GLU 71 ALA 72 ARG 73 ARG 74 ILE 75 LYS 76 VAL 77 LYS 78 ASP 79 GLY 80 MET 81 LYS 82 ILE 83 GLU 84 ARG 85 GLN 86 GLY 87 TYR 88 TYR 89 ASP 90 PHE 91 HIS 92 GLU 93 GLU 94 GLU 101 ILE 102 GLU 103 ARG 104 VAL 105 VAL 106 VAL 107 ASP 108 VAL 109 ALA 110 ILE 111 ILE 112 GLY 113 GLY 114 GLY 115 PRO 116 ALA 117 GLY 118 ILE 119 GLY 120 ALA 121 ALA 122 LEU 123 GLU 124 LEU 125 GLN 126 GLN 127 TYR 128 LEU 129 THR 130 VAL 131 ALA 132 LEU 133 ILE 134 GLU 135 GLU 136 ARG 137 GLY 138 TRP 139 LEU 140 GLY 141 GLY 142 ASP 143 MET 144 TRP 145 LEU 146 LYS 147 GLY 148 ILE 149 LYS 150 GLN 151 GLU 152 GLY 153 PHE 154 ASN 155 LYS 156 ASP 157 SER 158 ARG 159 LYS 160 VAL 161 VAL 162 GLU 163 GLU 164 LEU 165 VAL 166 GLY 167 LYS 168 LEU 169 ASN 170 GLU 171 ASN 172 THR 173 LYS 174 ILE 175 TYR 176 LEU 177 GLU 178 THR 179 SER 180 ALA 181 LEU 182 GLY 183 VAL 184 PHE 185 ASP 186 LYS 187 GLY 188 GLU 189 TYR 190 PHE 191 LEU 192 VAL 193 PRO 194 VAL 195 VAL 196 ARG 197 GLY 198 ASP 199 LYS 200 LEU 201 ILE 202 GLU 203 ILE 204 LEU 205 ALA 206 LYS 207 ARG 208 VAL 209 VAL 210 LEU 211 ALA 212 THR 213 GLY 214 ALA 215 ILE 216 ASP 217 SER 218 THR 219 MET 220 LEU 221 PHE 222 GLU 223 ASN 224 ASN 225 ASP 226 MET 227 PRO 228 GLY 229 VAL 230 PHE 231 ARG 232 ARG 233 ASP 234 PHE 235 ALA 236 LEU 237 GLU 238 VAL 239 MET 240 ASN 241 VAL 242 TRP 243 GLU 244 VAL 245 ALA 246 PRO 247 GLY 248 ARG 249 LYS 250 VAL 251 ALA 252 VAL 253 THR 254 GLY 255 SER 256 LYS 257 ALA 258 ASP 259 GLU 260 VAL 261 ILE 262 GLN 263 GLU 264 LEU 265 GLU 266 ARG 267 TRP 268 GLY 269 ILE 270 ASP 271 TYR 272 VAL 273 HIS 274 ILE 275 PRO 276 ASN 277 VAL 278 LYS 279 ARG 280 VAL 281 GLU 282 GLY 283 ASN 284 GLU 285 LYS 286 VAL 287 GLU 288 ARG 289 VAL 290 ILE 291 ASP 292 MET 293 ASN 294 ASN 295 HIS 296 GLU 297 TYR 298 LYS 299 VAL 300 ASP 301 ALA 302 LEU 303 ILE 304 PHE 305 ALA 306 ASP 307 GLY 308 ARG 309 ARG 310 PRO 311 ASP 312 ILE 313 ASN 314 PRO 315 ILE 316 THR 317 GLN 318 ALA 319 GLY 320 GLY 321 LYS 322 LEU 323 ARG 324 PHE 325 ARG 326 ARG 327 GLY 328 TYR 329 TYR 330 SER 331 PRO 332 VAL 333 LEU 334 ASP 335 GLU 336 TYR 337 HIS 338 ARG 339 ILE 340 LYS 341 ASP 342 GLY 343 ILE 344 TYR 345 VAL 346 ALA 347 GLY 348 SER 349 ALA 350 VAL 351 SER 352 ILE 353 LYS 354 PRO 355 HIS 356 TYR 357 ALA 358 ASN 359 TYR 360 LEU 361 GLU 362 GLY 363 LYS 364 LEU 365 VAL 366 GLY 367 ALA 368 TYR 369 ILE 370 LEU 371 LYS 372 GLU 373 PHE 374 GLY 375 TYR 376 ASP 377 ALA 378 GLN 379 PRO 380 CYS 381 ILE 382 TYR 383 GLU 384 GLU 385 LYS 386 LEU 387 ARG 388 GLU 389 TYR 390 GLU 391 PRO 392 GLU 393 SER 394 LEU 395 SER 396 ILE 397 PRO 398 ARG 399 ILE 400 PRO 401 LEU 402 ASP 403 LYS 404 PHE 405 ASN 406 LEU 407 GLU 408 ASP 409 VAL 410 GLN 411 ILE 412 CYS 413 GLY 414 CYS 415 ASP 416 VAL 417 SER 418 LEU 419 LYS 420 LYS 421 VAL 422 ASP 423 GLU 424 VAL 425 ILE 426 ARG 427 LYS 428 GLY 429 ILE 430 THR 431 ASP 432 LEU 433 GLN 434 ILE 435 ILE 436 LYS 437 ARG 438 LEU 439 THR 440 HIS 441 LEU 442 ALA 443 MET 444 GLY 445 PHE 446 CYS 447 GLN 448 GLY 449 ARG 450 TYR 451 CYS 452 LEU 453 PHE 454 ASN 455 GLY 456 ALA 457 VAL 458 VAL 459 VAL 460 SER 461 GLN 462 ARG 463 THR 464 GLY 465 LYS 466 LYS 467 LEU 468 SER 469 GLU 470 ILE 471 ASP 472 LEU 473 PRO 474 VAL 475 ALA 476 ARG 477 SER 478 PRO 479 ILE 480 LYS 481 ASN 482 VAL 483 LYS 484 MET 485 GLY 486 ILE 487 LEU 488 ALA 489 ARG 490

Unit 2

LEU 2 PRO 3 GLU 4 LYS 5 SER 6 GLU 7 ILE 8 VAL 9 VAL 10 ILE 11 GLY 12 GLY 13 GLY 14 ILE 15 VAL 16 GLY 17 VAL 18 THR 19 ILE 20 ALA 21 HIS 22 GLU 23 LEU 24 ALA 25 LYS 26 ARG 27 GLY 28 GLU 29 GLU 30 VAL 31 THR 32 VAL 33 ILE 34 GLU 35 LYS 36 ARG 37 PHE 38 ILE 39 GLY 40 SER 41 GLY 42 SER 43 THR 44 PHE 45 ARG 46 CYS 47 GLY 48 THR 49 GLY 50 ILE 51 ARG 52 GLN 53 GLN 54 PHE 55 ASN 56 ASP 57 GLU 58 ALA 59 ASN 60 VAL 61 ARG 62 VAL 63 MET 64 LYS 65 ARG 66 SER 67 VAL 68 GLU 69 LEU 70 TRP 71 LYS 72 LYS 73 TYR 74 SER 75 GLU 76 GLU 77 TYR 78 GLY 79 PHE 80 SER 81 PHE 82 LYS 83 GLN 84 THR 85 GLY 86 TYR 87 LEU 88 PHE 89 LEU 90 LEU 91 TYR 92 ASP 93 ASP 94 GLU 95 GLU 96 VAL 97 LYS 98 THR 99 PHE 100 LYS 101 ARG 102 ASN 103 ILE 104 GLU 105 ILE 106 GLN 107 ASN 108 LYS 109 PHE 110 GLY 111 VAL 112 PRO 113 THR 114 LYS 115 LEU 116 ILE 117 THR 118 PRO 119 GLU 120 GLU 121 ALA 122 LYS 123 GLU 124 ILE 125 VAL 126 PRO 127 LEU 128 LEU 129 ASP 130 ILE 131 SER 132 GLU 133 VAL 134 ILE 135 ALA 136 ALA 137 SER 138 TRP 139 ASN 140 PRO 141 THR 142 ASP 143 GLY 144 LYS 145 ALA 146 ASP 147 PRO 148 PHE 149 GLU 150 ALA 151 THR 152 THR 153 ALA 154 PHE 155 ALA 156 VAL 157 LYS 158 ALA 159 LYS 160 GLU 161 TYR 162 GLY 163 ALA 164 LYS 165 LEU 166 LEU 167 GLU 168 TYR 169 THR 170 GLU 171 VAL 172 LYS 173 GLY 174 PHE 175 LEU 176 ILE 177 GLU 178 ASN 179 ASN 180 GLU 181 ILE 182 LYS 183 GLY 184 VAL 185 LYS 186 THR 187 ASN 188 LYS 189 GLY 190 ILE 191 ILE 192 LYS 193 THR 194 GLY 195 ILE 196 VAL 197 VAL 198 ASN 199 ALA 200 THR 201 ASN 202 ALA 203 TRP 204 ALA 205 ASN 206 LEU 207 ILE 208 ASN 209 ALA 210 MET 211 ALA 212 GLY 213 ILE 214 LYS 215 THR 216 LYS 217 ILE 218 PRO 219 ILE 220 GLU 221 PRO 222 TYR 223 LYS 224 HIS 225 GLN 226 ALA 227 VAL 228 ILE 229 THR 230 GLN 231 PRO 232 ILE 233 LYS 234 ARG 235 GLY 236 THR 237 ILE 238 ASN 239 PRO 240 MET 241 VAL 242 ILE 243 SER 244 PHE 245 LYS 246 TYR 247 GLY 248 HIS 249 ALA 250 TYR 251 LEU 252 THR 253 GLN 254 THR 255 PHE 256 HIS 257 GLY 258 GLY 259 ILE 260 ILE 261 GLY 262 GLY 263 ILE 264 GLY 265 TYR 266 GLU 267 ILE 268 GLY 269 PRO 270 THR 271 TYR 272 ASP 273 LEU 274 THR 275 PRO 276 THR 277 TYR 278 GLU 279 PHE 280 LEU 281 ARG 282 GLU 283 VAL 284 SER 285 TYR 286 TYR 287 PHE 288 THR 289 LYS 290 ILE 291 ILE 292 PRO 293 ALA 294 LEU 295 LYS 296 ASN 297 LEU 298 LEU 299 ILE 300 LEU 301 ARG 302 THR 303 TRP 304 ALA 305 GLY 306 TYR 307 TYR 308 ALA 309 LYS 310 THR 311 PRO 312 ASP 313 SER 314 ASN 315 PRO 316 ALA 317 ILE 318 GLY 319 ARG 320 ILE 321 GLU 322 GLU 323 LEU 324 ASN 325 ASP 326 TYR 327 TYR 328 ILE 329 ALA 330 ALA 331 GLY 332 PHE 333 SER 334 GLY 335 HIS 336 GLY 337 PHE 338 MET 339 MET 340 ALA 341 PRO 342 ALA 343 VAL 344 GLY 345 GLU 346 MET 347 VAL 348 ALA 349 GLU 350 LEU 351 ILE 352 THR 353 LYS 354 GLY 355 LYS 356 THR 357 LYS 358 LEU 359 PRO 360 VAL 361 GLU 362 TRP 363 TYR 364 ASP 365 PRO 366 TYR 367 ARG 368 PHE 369 GLU 370 ARG 371 GLY 372 GLU 373 LEU 374 ARG 375

Ligands

Unit 3	ATP 801 FMN 802 CXS 803 FE 805 SO4 806
Unit 4	FAD 800 CL 804