Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE URIDINE PHOSPHORYLASE FROM SALMONEL TYPHIMURIUM IN COMPLEX WITH URIDINE-5P-MONOPHOSPHATE AND SU AT 2.35A RESOLUTION
Keywords NUCLEOSIDE PHOSPHORYLASE, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1Y1Q     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   URIDINE PHOSPHORYLASE  A 250 1877 0
2  Protein   URIDINE PHOSPHORYLASE  B 239 1789 0
3  Protein   URIDINE PHOSPHORYLASE  C 240 1798 0
4  Protein   URIDINE PHOSPHORYLASE  D 245 1836 0
5  Protein   URIDINE PHOSPHORYLASE  E 238 1782 0
6  Protein   URIDINE PHOSPHORYLASE  F 244 1830 0
7  Ligand   URIDINE PHOSPHORYLASE  A 2 0 10
8  RNA    C 1 0 21
9  Ligand   URIDINE PHOSPHORYLASE  E 1 0 5
10  Ligand   URIDINE PHOSPHORYLASE  F 1 0 5
11 Water     207 0 207
total       1668 10912 248
Proteins
Unit 1 SER1004 ASP1005 VAL1006 PHE1007 HIS1008 LEU1009 GLY1010 LEU1011 THR1012 LYS1013 ASN1014 ASP1015 LEU1016 GLN1017 GLY1018 ALA1019 GLN1020 LEU1021 ALA1022 ILE1023 VAL1024 PRO1025 GLY1026 ASP1027 PRO1028 GLU1029 ARG1030 VAL1031 GLU1032 LYS1033 ILE1034 ALA1035 ALA1036 LEU1037 MET1038 ASP1039 LYS1040 PRO1041 VAL1042 LYS1043 LEU1044 ALA1045 SER1046 HIS1047 ARG1048 GLU1049 PHE1050 THR1051 SER1052 TRP1053 ARG1054 ALA1055 GLU1056 LEU1057 ASP1058 GLY1059 LYS1060 ALA1061 VAL1062 ILE1063 VAL1064 CYS1065 SER1066 THR1067 GLY1068 ILE1069 GLY1070 GLY1071 PRO1072 SER1073 THR1074 SER1075 ILE1076 ALA1077 VAL1078 GLU1079 GLU1080 LEU1081 ALA1082 GLN1083 LEU1084 GLY1085 ILE1086 ARG1087 THR1088 PHE1089 LEU1090 ARG1091 ILE1092 GLY1093 THR1094 THR1095 GLY1096 ALA1097 ILE1098 GLN1099 PRO1100 HIS1101 ILE1102 ASN1103 VAL1104 GLY1105 ASP1106 VAL1107 LEU1108 VAL1109 THR1110 THR1111 ALA1112 SER1113 VAL1114 ARG1115 LEU1116 ASP1117 GLY1118 ALA1119 SER1120 LEU1121 HIS1122 PHE1123 ALA1124 PRO1125 MET1126 GLU1127 PHE1128 PRO1129 ALA1130 VAL1131 ALA1132 ASP1133 PHE1134 ALA1135 CYS1136 THR1137 THR1138 ALA1139 LEU1140 VAL1141 GLU1142 ALA1143 ALA1144 LYS1145 SER1146 ILE1147 GLY1148 ALA1149 THR1150 THR1151 HIS1152 VAL1153 GLY1154 VAL1155 THR1156 ALA1157 SER1158 SER1159 ASP1160 THR1161 PHE1162 TYR1163 PRO1164 GLY1165 GLN1166 GLU1167 ARG1168 TYR1169 ASP1170 THR1171 TYR1172 SER1173 GLY1174 ARG1175 VAL1176 VAL1177 ARG1178 ARG1179 PHE1180 LYS1181 GLY1182 SER1183 MET1184 GLU1185 GLU1186 TRP1187 GLN1188 ALA1189 MET1190 GLY1191 VAL1192 MET1193 ASN1194 TYR1195 GLU1196 MET1197 GLU1198 SER1199 ALA1200 THR1201 LEU1202 LEU1203 THR1204 MET1205 CYS1206 ALA1207 SER1208 GLN1209 GLY1210 LEU1211 ARG1212 ALA1213 GLY1214 MET1215 VAL1216 ALA1217 GLY1218 VAL1219 ILE1220 VAL1221 ASN1222 ARG1223 THR1224 GLN1225 GLN1226 GLU1227 ILE1228 PRO1229 ASN1230 ALA1231 GLU1232 THR1233 MET1234 LYS1235 GLN1236 THR1237 GLU1238 SER1239 HIS1240 ALA1241 VAL1242 LYS1243 ILE1244 VAL1245 VAL1246 GLU1247 ALA1248 ALA1249 ARG1250 ARG1251 LEU1252 LEU1253
Unit 2 SER2004 ASP2005 VAL2006 PHE2007 HIS2008 LEU2009 GLY2010 LEU2011 THR2012 LYS2013 ASN2014 ASP2015 LEU2016 GLN2017 GLY2018 ALA2019 GLN2020 LEU2021 ALA2022 ILE2023 VAL2024 PRO2025 GLY2026 ASP2027 PRO2028 GLU2029 ARG2030 VAL2031 GLU2032 LYS2033 ILE2034 ALA2035 ALA2036 LEU2037 MET2038 ASP2039 LYS2040 PRO2041 VAL2042 LYS2043 LEU2044 ALA2045 SER2046 HIS2047 ARG2048 GLU2049 PHE2050 THR2051 SER2052 TRP2053 ARG2054 ALA2055 GLU2056 LEU2057 ASP2058 GLY2059 LYS2060 ALA2061 VAL2062 ILE2063 VAL2064 CYS2065 SER2066 THR2067 GLY2068 ILE2069 GLY2070 GLY2071 PRO2072 SER2073 THR2074 SER2075 ILE2076 ALA2077 VAL2078 GLU2079 GLU2080 LEU2081 ALA2082 GLN2083 LEU2084 GLY2085 ILE2086 ARG2087 THR2088 PHE2089 LEU2090 ARG2091 ILE2092 GLY2093 THR2094 THR2095 GLY2096 ALA2097 ILE2098 GLN2099 PRO2100 HIS2101 ILE2102 ASN2103 VAL2104 GLY2105 ASP2106 VAL2107 LEU2108 VAL2109 THR2110 THR2111 ALA2112 SER2113 VAL2114 ARG2115 LEU2116 ASP2117 GLY2118 ALA2119 SER2120 LEU2121 HIS2122 PHE2123 ALA2124 PRO2125 MET2126 GLU2127 PHE2128 PRO2129 ALA2130 VAL2131 ALA2132 ASP2133 PHE2134 ALA2135 CYS2136 THR2137 THR2138 ALA2139 LEU2140 VAL2141 GLU2142 ALA2143 ALA2144 LYS2145 SER2146 ILE2147 GLY2148 ALA2149 THR2150 THR2151 HIS2152 VAL2153 GLY2154 VAL2155 THR2156 ALA2157 SER2158 SER2159 ASP2160 THR2161 PHE2162 TYR2163 PRO2164 GLY2165 GLN2166 GLU2167 ARG2168 TYR2169 ASP2170 THR2171 TYR2172 SER2173 GLY2174 ARG2175 VAL2176 VAL2177 ARG2178 ARG2179 PHE2180 LYS2181 GLY2182 SER2183 MET2184 GLU2185 GLU2186 TRP2187 GLN2188 ALA2189 MET2190 GLY2191 VAL2192 MET2193 ASN2194 TYR2195 GLU2196 MET2197 GLU2198 SER2199 ALA2200 THR2201 LEU2202 LEU2203 THR2204 MET2205 CYS2206 ALA2207 SER2208 GLN2209 GLY2210 LEU2211 ARG2212 ALA2213 GLY2214 MET2215 VAL2216 ALA2217 GLY2218 VAL2219 ILE2220 VAL2221 ASN2222 ARG2223 THR2224 GLN2225 THR2237 GLU2238 SER2239 HIS2240 ALA2241 VAL2242 LYS2243 ILE2244 VAL2245 VAL2246 GLU2247 ALA2248 ALA2249 ARG2250 ARG2251 LEU2252 LEU2253
Unit 3 SER3004 ASP3005 VAL3006 PHE3007 HIS3008 LEU3009 GLY3010 LEU3011 THR3012 LYS3013 ASN3014 ASP3015 LEU3016 GLN3017 GLY3018 ALA3019 GLN3020 LEU3021 ALA3022 ILE3023 VAL3024 PRO3025 GLY3026 ASP3027 PRO3028 GLU3029 ARG3030 VAL3031 GLU3032 LYS3033 ILE3034 ALA3035 ALA3036 LEU3037 MET3038 ASP3039 LYS3040 PRO3041 VAL3042 LYS3043 LEU3044 ALA3045 SER3046 HIS3047 ARG3048 GLU3049 PHE3050 THR3051 SER3052 TRP3053 ARG3054 ALA3055 GLU3056 LEU3057 ASP3058 GLY3059 LYS3060 ALA3061 VAL3062 ILE3063 VAL3064 CYS3065 SER3066 THR3067 GLY3068 ILE3069 GLY3070 GLY3071 PRO3072 SER3073 THR3074 SER3075 ILE3076 ALA3077 VAL3078 GLU3079 GLU3080 LEU3081 ALA3082 GLN3083 LEU3084 GLY3085 ILE3086 ARG3087 THR3088 PHE3089 LEU3090 ARG3091 ILE3092 GLY3093 THR3094 THR3095 GLY3096 ALA3097 ILE3098 GLN3099 PRO3100 HIS3101 ILE3102 ASN3103 VAL3104 GLY3105 ASP3106 VAL3107 LEU3108 VAL3109 THR3110 THR3111 ALA3112 SER3113 VAL3114 ARG3115 LEU3116 ASP3117 GLY3118 ALA3119 SER3120 LEU3121 HIS3122 PHE3123 ALA3124 PRO3125 MET3126 GLU3127 PHE3128 PRO3129 ALA3130 VAL3131 ALA3132 ASP3133 PHE3134 ALA3135 CYS3136 THR3137 THR3138 ALA3139 LEU3140 VAL3141 GLU3142 ALA3143 ALA3144 LYS3145 SER3146 ILE3147 GLY3148 ALA3149 THR3150 THR3151 HIS3152 VAL3153 GLY3154 VAL3155 THR3156 ALA3157 SER3158 SER3159 ASP3160 THR3161 PHE3162 TYR3163 PRO3164 GLY3165 GLN3166 GLU3167 ARG3168 TYR3169 ASP3170 THR3171 TYR3172 SER3173 GLY3174 ARG3175 VAL3176 VAL3177 ARG3178 ARG3179 PHE3180 LYS3181 GLY3182 SER3183 MET3184 GLU3185 GLU3186 TRP3187 GLN3188 ALA3189 MET3190 GLY3191 VAL3192 MET3193 ASN3194 TYR3195 GLU3196 MET3197 GLU3198 SER3199 ALA3200 THR3201 LEU3202 LEU3203 THR3204 MET3205 CYS3206 ALA3207 SER3208 GLN3209 GLY3210 LEU3211 ARG3212 ALA3213 GLY3214 MET3215 VAL3216 ALA3217 GLY3218 VAL3219 ILE3220 VAL3221 ASN3222 ARG3223 THR3224 GLN3225 GLN3236 THR3237 GLU3238 SER3239 HIS3240 ALA3241 VAL3242 LYS3243 ILE3244 VAL3245 VAL3246 GLU3247 ALA3248 ALA3249 ARG3250 ARG3251 LEU3252 LEU3253
Unit 4 SER4004 ASP4005 VAL4006 PHE4007 HIS4008 LEU4009 GLY4010 LEU4011 THR4012 LYS4013 ASN4014 ASP4015 LEU4016 GLN4017 GLY4018 ALA4019 GLN4020 LEU4021 ALA4022 ILE4023 VAL4024 PRO4025 GLY4026 ASP4027 PRO4028 GLU4029 ARG4030 VAL4031 GLU4032 LYS4033 ILE4034 ALA4035 ALA4036 LEU4037 MET4038 ASP4039 LYS4040 PRO4041 VAL4042 LYS4043 LEU4044 ALA4045 SER4046 HIS4047 ARG4048 GLU4049 PHE4050 THR4051 SER4052 TRP4053 ARG4054 ALA4055 GLU4056 LEU4057 ASP4058 GLY4059 LYS4060 ALA4061 VAL4062 ILE4063 VAL4064 CYS4065 SER4066 THR4067 GLY4068 ILE4069 GLY4070 GLY4071 PRO4072 SER4073 THR4074 SER4075 ILE4076 ALA4077 VAL4078 GLU4079 GLU4080 LEU4081 ALA4082 GLN4083 LEU4084 GLY4085 ILE4086 ARG4087 THR4088 PHE4089 LEU4090 ARG4091 ILE4092 GLY4093 THR4094 THR4095 GLY4096 ALA4097 ILE4098 GLN4099 PRO4100 HIS4101 ILE4102 ASN4103 VAL4104 GLY4105 ASP4106 VAL4107 LEU4108 VAL4109 THR4110 THR4111 ALA4112 SER4113 VAL4114 ARG4115 LEU4116 ASP4117 GLY4118 ALA4119 SER4120 LEU4121 HIS4122 PHE4123 ALA4124 PRO4125 MET4126 GLU4127 PHE4128 PRO4129 ALA4130 VAL4131 ALA4132 ASP4133 PHE4134 ALA4135 CYS4136 THR4137 THR4138 ALA4139 LEU4140 VAL4141 GLU4142 ALA4143 ALA4144 LYS4145 SER4146 ILE4147 GLY4148 ALA4149 THR4150 THR4151 HIS4152 VAL4153 GLY4154 VAL4155 THR4156 ALA4157 SER4158 SER4159 ASP4160 THR4161 PHE4162 TYR4163 PRO4164 GLY4165 GLN4166 GLU4167 ARG4168 TYR4169 ASP4170 THR4171 TYR4172 SER4173 GLY4174 ARG4175 VAL4176 VAL4177 ARG4178 ARG4179 PHE4180 LYS4181 GLY4182 SER4183 MET4184 GLU4185 GLU4186 TRP4187 GLN4188 ALA4189 MET4190 GLY4191 VAL4192 MET4193 ASN4194 TYR4195 GLU4196 MET4197 GLU4198 SER4199 ALA4200 THR4201 LEU4202 LEU4203 THR4204 MET4205 CYS4206 ALA4207 SER4208 GLN4209 GLY4210 LEU4211 ARG4212 ALA4213 GLY4214 MET4215 VAL4216 ALA4217 GLY4218 VAL4219 ILE4220 VAL4221 ASN4222 ARG4223 THR4224 GLN4225 ALA4231 GLU4232 THR4233 MET4234 LYS4235 GLN4236 THR4237 GLU4238 SER4239 HIS4240 ALA4241 VAL4242 LYS4243 ILE4244 VAL4245 VAL4246 GLU4247 ALA4248 ALA4249 ARG4250 ARG4251 LEU4252 LEU4253
Unit 5 SER5004 ASP5005 VAL5006 PHE5007 HIS5008 LEU5009 GLY5010 LEU5011 THR5012 LYS5013 ASN5014 ASP5015 LEU5016 GLN5017 GLY5018 ALA5019 GLN5020 LEU5021 ALA5022 ILE5023 VAL5024 PRO5025 GLY5026 ASP5027 PRO5028 GLU5029 ARG5030 VAL5031 GLU5032 LYS5033 ILE5034 ALA5035 ALA5036 LEU5037 MET5038 ASP5039 LYS5040 PRO5041 VAL5042 LYS5043 LEU5044 ALA5045 SER5046 HIS5047 ARG5048 GLU5049 PHE5050 THR5051 SER5052 TRP5053 ARG5054 ALA5055 GLU5056 LEU5057 ASP5058 GLY5059 LYS5060 ALA5061 VAL5062 ILE5063 VAL5064 CYS5065 SER5066 THR5067 GLY5068 ILE5069 GLY5070 GLY5071 PRO5072 SER5073 THR5074 SER5075 ILE5076 ALA5077 VAL5078 GLU5079 GLU5080 LEU5081 ALA5082 GLN5083 LEU5084 GLY5085 ILE5086 ARG5087 THR5088 PHE5089 LEU5090 ARG5091 ILE5092 GLY5093 THR5094 THR5095 GLY5096 ALA5097 ILE5098 GLN5099 PRO5100 HIS5101 ILE5102 ASN5103 VAL5104 GLY5105 ASP5106 VAL5107 LEU5108 VAL5109 THR5110 THR5111 ALA5112 SER5113 VAL5114 ARG5115 LEU5116 ASP5117 GLY5118 ALA5119 SER5120 LEU5121 HIS5122 PHE5123 ALA5124 PRO5125 MET5126 GLU5127 PHE5128 PRO5129 ALA5130 VAL5131 ALA5132 ASP5133 PHE5134 ALA5135 CYS5136 THR5137 THR5138 ALA5139 LEU5140 VAL5141 GLU5142 ALA5143 ALA5144 LYS5145 SER5146 ILE5147 GLY5148 ALA5149 THR5150 THR5151 HIS5152 VAL5153 GLY5154 VAL5155 THR5156 ALA5157 SER5158 SER5159 ASP5160 THR5161 PHE5162 TYR5163 PRO5164 GLY5165 GLN5166 GLU5167 ARG5168 TYR5169 ASP5170 THR5171 TYR5172 SER5173 GLY5174 ARG5175 VAL5176 VAL5177 ARG5178 ARG5179 PHE5180 LYS5181 GLY5182 SER5183 MET5184 GLU5185 GLU5186 TRP5187 GLN5188 ALA5189 MET5190 GLY5191 VAL5192 MET5193 ASN5194 TYR5195 GLU5196 MET5197 GLU5198 SER5199 ALA5200 THR5201 LEU5202 LEU5203 THR5204 MET5205 CYS5206 ALA5207 SER5208 GLN5209 GLY5210 LEU5211 ARG5212 ALA5213 GLY5214 MET5215 VAL5216 ALA5217 GLY5218 VAL5219 ILE5220 VAL5221 ASN5222 ARG5223 THR5224 GLN5225 GLU5238 SER5239 HIS5240 ALA5241 VAL5242 LYS5243 ILE5244 VAL5245 VAL5246 GLU5247 ALA5248 ALA5249 ARG5250 ARG5251 LEU5252 LEU5253
Unit 6 SER6004 ASP6005 VAL6006 PHE6007 HIS6008 LEU6009 GLY6010 LEU6011 THR6012 LYS6013 ASN6014 ASP6015 LEU6016 GLN6017 GLY6018 ALA6019 GLN6020 LEU6021 ALA6022 ILE6023 VAL6024 PRO6025 GLY6026 ASP6027 PRO6028 GLU6029 ARG6030 VAL6031 GLU6032 LYS6033 ILE6034 ALA6035 ALA6036 LEU6037 MET6038 ASP6039 LYS6040 PRO6041 VAL6042 LYS6043 LEU6044 ALA6045 SER6046 HIS6047 ARG6048 GLU6049 PHE6050 THR6051 SER6052 TRP6053 ARG6054 ALA6055 GLU6056 LEU6057 ASP6058 GLY6059 LYS6060 ALA6061 VAL6062 ILE6063 VAL6064 CYS6065 SER6066 THR6067 GLY6068 ILE6069 GLY6070 GLY6071 PRO6072 SER6073 THR6074 SER6075 ILE6076 ALA6077 VAL6078 GLU6079 GLU6080 LEU6081 ALA6082 GLN6083 LEU6084 GLY6085 ILE6086 ARG6087 THR6088 PHE6089 LEU6090 ARG6091 ILE6092 GLY6093 THR6094 THR6095 GLY6096 ALA6097 ILE6098 GLN6099 PRO6100 HIS6101 ILE6102 ASN6103 VAL6104 GLY6105 ASP6106 VAL6107 LEU6108 VAL6109 THR6110 THR6111 ALA6112 SER6113 VAL6114 ARG6115 LEU6116 ASP6117 GLY6118 ALA6119 SER6120 LEU6121 HIS6122 PHE6123 ALA6124 PRO6125 MET6126 GLU6127 PHE6128 PRO6129 ALA6130 VAL6131 ALA6132 ASP6133 PHE6134 ALA6135 CYS6136 THR6137 THR6138 ALA6139 LEU6140 VAL6141 GLU6142 ALA6143 ALA6144 LYS6145 SER6146 ILE6147 GLY6148 ALA6149 THR6150 THR6151 HIS6152 VAL6153 GLY6154 VAL6155 THR6156 ALA6157 SER6158 SER6159 ASP6160 THR6161 PHE6162 TYR6163 PRO6164 GLY6165 GLN6166 GLU6167 ARG6168 TYR6169 ASP6170 THR6171 TYR6172 SER6173 GLY6174 ARG6175 VAL6176 VAL6177 ARG6178 ARG6179 PHE6180 LYS6181 GLY6182 SER6183 MET6184 GLU6185 GLU6186 TRP6187 GLN6188 ALA6189 MET6190 GLY6191 VAL6192 MET6193 ASN6194 TYR6195 GLU6196 MET6197 GLU6198 SER6199 ALA6200 THR6201 LEU6202 LEU6203 THR6204 MET6205 CYS6206 ALA6207 SER6208 GLN6209 GLY6210 LEU6211 ARG6212 ALA6213 GLY6214 MET6215 VAL6216 ALA6217 GLY6218 VAL6219 ILE6220 VAL6221 ASN6222 ARG6223 THR6224 GLN6225 GLN6226 GLU6227 ILE6228 PRO6229 ASN6230 THR6237 GLU6238 SER6239 HIS6240 ALA6241 VAL6242 LYS6243 ILE6244 VAL6245 VAL6246 GLU6247 ALA6248 ALA6249 ARG6250 ARG6251 LEU6252 LEU6253
Nucleic acids
Unit 8 U8003
Ligands
Unit 7 SO47003 SO47004
Unit 9 SO47001
Unit 10 SO47005
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany