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Sequence, Chains, Asymmetric and Biological Units

Title FAB FRAGMENT OF CATALYTIC ELIMINATION ANTIBODY 34E4 E(H50)D COMPLEX WITH HAPTEN
Keywords IMMUNOGLOBULIN, CATALYTIC ANTIBODY, CHIMERIC FAB, HAPTEN COM IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1Y18     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CATALYTIC ANTIBODY 34E4 LIGHT CHAINCATALYTIC ANTIBODY 34E4 HEAVY CHAIN  L 216 1635 0
2  Protein   CATALYTIC ANTIBODY 34E4 LIGHT CHAINCATALYTIC ANTIBODY 34E4 HEAVY CHAIN  H 226 1730 0
3  Protein   CATALYTIC ANTIBODY 34E4 LIGHT CHAINCATALYTIC ANTIBODY 34E4 HEAVY CHAIN  A 216 1635 0
4  Protein   CATALYTIC ANTIBODY 34E4 LIGHT CHAINCATALYTIC ANTIBODY 34E4 HEAVY CHAIN  B 226 1730 0
5  Protein   CATALYTIC ANTIBODY 34E4 LIGHT CHAINCATALYTIC ANTIBODY 34E4 HEAVY CHAIN  C 216 1635 0
6  Protein   CATALYTIC ANTIBODY 34E4 LIGHT CHAINCATALYTIC ANTIBODY 34E4 HEAVY CHAIN  D 226 1730 0
7  Protein   CATALYTIC ANTIBODY 34E4 LIGHT CHAINCATALYTIC ANTIBODY 34E4 HEAVY CHAIN  E 216 1635 0
8  Protein   CATALYTIC ANTIBODY 34E4 LIGHT CHAINCATALYTIC ANTIBODY 34E4 HEAVY CHAIN  F 226 1730 0
9  Ligand   CATALYTIC ANTIBODY 34E4 LIGHT CHAINCATALYTIC ANTIBODY 34E4 HEAVY CHAIN  H 1 0 19
10  Ligand   CATALYTIC ANTIBODY 34E4 LIGHT CHAINCATALYTIC ANTIBODY 34E4 HEAVY CHAIN  B 1 0 19
11  Ligand   CATALYTIC ANTIBODY 34E4 LIGHT CHAINCATALYTIC ANTIBODY 34E4 HEAVY CHAIN  D 1 0 19
12  Ligand   CATALYTIC ANTIBODY 34E4 LIGHT CHAINCATALYTIC ANTIBODY 34E4 HEAVY CHAIN  E 2 0 20
13 Water     287 0 287
total       2060 13460 364

Proteins
Unit 1 GLU1 LEU2 VAL3 VAL4 THR5 GLN6 GLU7 SER8 ALA9 LEU11 THR12 THR13 SER14 PRO15 GLY16 GLU17 THR18 VAL19 THR20 LEU21 THR22 CYS23 ARG24 SER25 SER26 SER27 GLY27A ALA27B VAL27C THR28 THR29 SER30 ASN31 TYR32 ALA33 THR34 TRP35 VAL36 GLN37 GLU38 LYS39 PRO40 ASP41 HIS42 LEU43 PHE44 THR45 GLY46 LEU47 ILE48 GLY49 GLY50 THR51 ASN52 LYS53 ARG54 ALA55 PRO56 GLY57 VAL58 PRO59 ALA60 ARG61 PHE62 SER63 GLY64 SER65 LEU66 ILE67 GLY68 ASP69 ARG70 ALA71 ALA72 LEU73 THR74 ILE75 THR76 GLY77 ALA78 GLN79 THR80 GLU81 ASP82 GLU83 ALA84 ILE85 TYR86 PHE87 CYS88 ALA89 LEU90 TRP91 ASN92 SER93 ASN94 HIS95 LEU96 VAL97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211 GLY212 GLU213 CYS214
Unit 2 GLU1 VAL2 LYS3 LEU4 LEU5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 ALA12 GLN13 PRO14 GLY15 GLY16 SER17 LEU18 LYS19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 ASP28 PHE29 ARG30 ARG31 TYR32 TRP33 MET34 THR35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 ASP50 ILE51 ASN52 PRO52A ASP53 SER54 ARG55 THR56 ILE57 ASN58 TYR59 MET60 PRO61 SER62 LEU63 LYS64 ASP65 LYS66 PHE67 ILE68 ILE69 SER70 ARG71 ASP72 ASN73 ALA74 LYS75 ASN76 SER77 LEU78 TYR79 LEU80 GLN81 LEU82 SER82A ARG82B LEU82C ARG83 SER84 GLU85 ASP86 SER87 ALA88 LEU89 TYR90 TYR91 CYS92 VAL93 ARG94 LEU95 ASP96 PHE97 ASP98 VAL99 TYR100 ASN100A HIS100B TYR100C TYR100D VAL100E LEU100F ASP101 TYR102 TRP103 GLY104 GLN105 GLY106 THR107 SER108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 LYS129 SER130 THR133 SER134 GLY135 GLY136 THR137 ALA138 ALA139 LEU140 GLY141 CYS142 LEU143 VAL144 LYS145 ASP146 TYR147 PHE148 PRO149 GLU150 PRO151 VAL152 THR153 VAL154 SER156 TRP157 ASN162 SER163 GLY164 ALA165 LEU166 THR167 SER168 GLY169 VAL171 HIS172 THR173 PHE174 PRO175 ALA176 VAL177 LEU178 GLN179 SER180 SER182 GLY183 LEU184 TYR185 SER186 LEU187 SER188 SER189 VAL190 VAL191 THR192 VAL193 PRO194 SER195 SER196 SER197 LEU198 GLY199 THR200 GLN203 THR205 TYR206 ILE207 CYS208 ASN209 VAL210 ASN211 HIS212 LYS213 PRO214 SER215 ASN216 THR217 LYS218 VAL219 ASP220 LYS221 LYS222 VAL223 GLU226 PRO227 LYS228 SER232 CYS233
Unit 3 GLU1 LEU2 VAL3 VAL4 THR5 GLN6 GLU7 SER8 ALA9 LEU11 THR12 THR13 SER14 PRO15 GLY16 GLU17 THR18 VAL19 THR20 LEU21 THR22 CYS23 ARG24 SER25 SER26 SER27 GLY27A ALA27B VAL27C THR28 THR29 SER30 ASN31 TYR32 ALA33 THR34 TRP35 VAL36 GLN37 GLU38 LYS39 PRO40 ASP41 HIS42 LEU43 PHE44 THR45 GLY46 LEU47 ILE48 GLY49 GLY50 THR51 ASN52 LYS53 ARG54 ALA55 PRO56 GLY57 VAL58 PRO59 ALA60 ARG61 PHE62 SER63 GLY64 SER65 LEU66 ILE67 GLY68 ASP69 ARG70 ALA71 ALA72 LEU73 THR74 ILE75 THR76 GLY77 ALA78 GLN79 THR80 GLU81 ASP82 GLU83 ALA84 ILE85 TYR86 PHE87 CYS88 ALA89 LEU90 TRP91 ASN92 SER93 ASN94 HIS95 LEU96 VAL97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211 GLY212 GLU213 CYS214
Unit 4 GLU1 VAL2 LYS3 LEU4 LEU5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 ALA12 GLN13 PRO14 GLY15 GLY16 SER17 LEU18 LYS19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 ASP28 PHE29 ARG30 ARG31 TYR32 TRP33 MET34 THR35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 ASP50 ILE51 ASN52 PRO52A ASP53 SER54 ARG55 THR56 ILE57 ASN58 TYR59 MET60 PRO61 SER62 LEU63 LYS64 ASP65 LYS66 PHE67 ILE68 ILE69 SER70 ARG71 ASP72 ASN73 ALA74 LYS75 ASN76 SER77 LEU78 TYR79 LEU80 GLN81 LEU82 SER82A ARG82B LEU82C ARG83 SER84 GLU85 ASP86 SER87 ALA88 LEU89 TYR90 TYR91 CYS92 VAL93 ARG94 LEU95 ASP96 PHE97 ASP98 VAL99 TYR100 ASN100A HIS100B TYR100C TYR100D VAL100E LEU100F ASP101 TYR102 TRP103 GLY104 GLN105 GLY106 THR107 SER108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 LYS129 SER130 THR133 SER134 GLY135 GLY136 THR137 ALA138 ALA139 LEU140 GLY141 CYS142 LEU143 VAL144 LYS145 ASP146 TYR147 PHE148 PRO149 GLU150 PRO151 VAL152 THR153 VAL154 SER156 TRP157 ASN162 SER163 GLY164 ALA165 LEU166 THR167 SER168 GLY169 VAL171 HIS172 THR173 PHE174 PRO175 ALA176 VAL177 LEU178 GLN179 SER180 SER182 GLY183 LEU184 TYR185 SER186 LEU187 SER188 SER189 VAL190 VAL191 THR192 VAL193 PRO194 SER195 SER196 SER197 LEU198 GLY199 THR200 GLN203 THR205 TYR206 ILE207 CYS208 ASN209 VAL210 ASN211 HIS212 LYS213 PRO214 SER215 ASN216 THR217 LYS218 VAL219 ASP220 LYS221 LYS222 VAL223 GLU226 PRO227 LYS228 SER232 CYS233
Unit 5 GLU1 LEU2 VAL3 VAL4 THR5 GLN6 GLU7 SER8 ALA9 LEU11 THR12 THR13 SER14 PRO15 GLY16 GLU17 THR18 VAL19 THR20 LEU21 THR22 CYS23 ARG24 SER25 SER26 SER27 GLY27A ALA27B VAL27C THR28 THR29 SER30 ASN31 TYR32 ALA33 THR34 TRP35 VAL36 GLN37 GLU38 LYS39 PRO40 ASP41 HIS42 LEU43 PHE44 THR45 GLY46 LEU47 ILE48 GLY49 GLY50 THR51 ASN52 LYS53 ARG54 ALA55 PRO56 GLY57 VAL58 PRO59 ALA60 ARG61 PHE62 SER63 GLY64 SER65 LEU66 ILE67 GLY68 ASP69 ARG70 ALA71 ALA72 LEU73 THR74 ILE75 THR76 GLY77 ALA78 GLN79 THR80 GLU81 ASP82 GLU83 ALA84 ILE85 TYR86 PHE87 CYS88 ALA89 LEU90 TRP91 ASN92 SER93 ASN94 HIS95 LEU96 VAL97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211 GLY212 GLU213 CYS214
Unit 6 GLU1 VAL2 LYS3 LEU4 LEU5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 ALA12 GLN13 PRO14 GLY15 GLY16 SER17 LEU18 LYS19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 ASP28 PHE29 ARG30 ARG31 TYR32 TRP33 MET34 THR35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 ASP50 ILE51 ASN52 PRO52A ASP53 SER54 ARG55 THR56 ILE57 ASN58 TYR59 MET60 PRO61 SER62 LEU63 LYS64 ASP65 LYS66 PHE67 ILE68 ILE69 SER70 ARG71 ASP72 ASN73 ALA74 LYS75 ASN76 SER77 LEU78 TYR79 LEU80 GLN81 LEU82 SER82A ARG82B LEU82C ARG83 SER84 GLU85 ASP86 SER87 ALA88 LEU89 TYR90 TYR91 CYS92 VAL93 ARG94 LEU95 ASP96 PHE97 ASP98 VAL99 TYR100 ASN100A HIS100B TYR100C TYR100D VAL100E LEU100F ASP101 TYR102 TRP103 GLY104 GLN105 GLY106 THR107 SER108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 LYS129 SER130 THR133 SER134 GLY135 GLY136 THR137 ALA138 ALA139 LEU140 GLY141 CYS142 LEU143 VAL144 LYS145 ASP146 TYR147 PHE148 PRO149 GLU150 PRO151 VAL152 THR153 VAL154 SER156 TRP157 ASN162 SER163 GLY164 ALA165 LEU166 THR167 SER168 GLY169 VAL171 HIS172 THR173 PHE174 PRO175 ALA176 VAL177 LEU178 GLN179 SER180 SER182 GLY183 LEU184 TYR185 SER186 LEU187 SER188 SER189 VAL190 VAL191 THR192 VAL193 PRO194 SER195 SER196 SER197 LEU198 GLY199 THR200 GLN203 THR205 TYR206 ILE207 CYS208 ASN209 VAL210 ASN211 HIS212 LYS213 PRO214 SER215 ASN216 THR217 LYS218 VAL219 ASP220 LYS221 LYS222 VAL223 GLU226 PRO227 LYS228 SER232 CYS233
Unit 7 GLU1 LEU2 VAL3 VAL4 THR5 GLN6 GLU7 SER8 ALA9 LEU11 THR12 THR13 SER14 PRO15 GLY16 GLU17 THR18 VAL19 THR20 LEU21 THR22 CYS23 ARG24 SER25 SER26 SER27 GLY27A ALA27B VAL27C THR28 THR29 SER30 ASN31 TYR32 ALA33 THR34 TRP35 VAL36 GLN37 GLU38 LYS39 PRO40 ASP41 HIS42 LEU43 PHE44 THR45 GLY46 LEU47 ILE48 GLY49 GLY50 THR51 ASN52 LYS53 ARG54 ALA55 PRO56 GLY57 VAL58 PRO59 ALA60 ARG61 PHE62 SER63 GLY64 SER65 LEU66 ILE67 GLY68 ASP69 ARG70 ALA71 ALA72 LEU73 THR74 ILE75 THR76 GLY77 ALA78 GLN79 THR80 GLU81 ASP82 GLU83 ALA84 ILE85 TYR86 PHE87 CYS88 ALA89 LEU90 TRP91 ASN92 SER93 ASN94 HIS95 LEU96 VAL97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211 GLY212 GLU213 CYS214
Unit 8 GLU1 VAL2 LYS3 LEU4 LEU5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 ALA12 GLN13 PRO14 GLY15 GLY16 SER17 LEU18 LYS19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 ASP28 PHE29 ARG30 ARG31 TYR32 TRP33 MET34 THR35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 ASP50 ILE51 ASN52 PRO52A ASP53 SER54 ARG55 THR56 ILE57 ASN58 TYR59 MET60 PRO61 SER62 LEU63 LYS64 ASP65 LYS66 PHE67 ILE68 ILE69 SER70 ARG71 ASP72 ASN73 ALA74 LYS75 ASN76 SER77 LEU78 TYR79 LEU80 GLN81 LEU82 SER82A ARG82B LEU82C ARG83 SER84 GLU85 ASP86 SER87 ALA88 LEU89 TYR90 TYR91 CYS92 VAL93 ARG94 LEU95 ASP96 PHE97 ASP98 VAL99 TYR100 ASN100A HIS100B TYR100C TYR100D VAL100E LEU100F ASP101 TYR102 TRP103 GLY104 GLN105 GLY106 THR107 SER108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 LYS129 SER130 THR133 SER134 GLY135 GLY136 THR137 ALA138 ALA139 LEU140 GLY141 CYS142 LEU143 VAL144 LYS145 ASP146 TYR147 PHE148 PRO149 GLU150 PRO151 VAL152 THR153 VAL154 SER156 TRP157 ASN162 SER163 GLY164 ALA165 LEU166 THR167 SER168 GLY169 VAL171 HIS172 THR173 PHE174 PRO175 ALA176 VAL177 LEU178 GLN179 SER180 SER182 GLY183 LEU184 TYR185 SER186 LEU187 SER188 SER189 VAL190 VAL191 THR192 VAL193 PRO194 SER195 SER196 SER197 LEU198 GLY199 THR200 GLN203 THR205 TYR206 ILE207 CYS208 ASN209 VAL210 ASN211 HIS212 LYS213 PRO214 SER215 ASN216 THR217 LYS218 VAL219 ASP220 LYS221 LYS222 VAL223 GLU226 PRO227 LYS228 SER232 CYS233

Ligands
Unit 9 HAN501
Unit 10 HAN601
Unit 11 HAN701
Unit 12 HAN801 CL901

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany