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| [Image Library Entry] | [Analyse Helix] |
| Title | HIV-1 SUBTYPE B GENOMIC RNA DIMERIZATION INITIATION SITE | |
| Keywords | RNA, LOOP-LOOP COMPLEX, HIV-1 | |
| Experiment | X-ray diffraction | |
| Number of Models | 1 |
| Database | ID code | Status | Coordinate files | ||
| Header | Asymmetric unit | Biological unit | |||
| PDB | 1XPE | released | available | available | Quaternary Structure Server |
| Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
|---|---|---|---|---|---|---|
| 1 | RNA | A | 23 | 491 | 0 | |
| 2 | RNA | B | 23 | 491 | 0 | |
| 3 | Ligand | 5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP *CP*AP*AP*G)-3' | A | 5 | 0 | 9 |
| 4 | Ligand | 5'- R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP *CP*AP*AP*G)-3' | B | 6 | 0 | 18 |
| 5 | Water | 121 | 0 | 121 | ||
| total | 178 | 982 | 148 |
| Unit 1 | C1 U2 U3 G4 C5 U6 G7 A8 A9 G10 C11 G12 C13 G14 C15 A16 C17 G18 G19 C20 A21 A22 G23 |
| Unit 2 | C1 U2 U3 G4 C5 U6 G7 A8 A9 G10 C11 G12 C13 G14 C15 A16 C17 G18 G19 C20 A21 A22 G23 |
| Unit 3 | MG101 CL102 NA103 SO4108 NA111 |
| Unit 4 | SO4104 NA105 NA106 SO4107 SO4109 MG110 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
| Perl script: | PDBscan.pl (15 Sep 2016) |
| Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |