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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A PEPTIDOGLYCAN SYNTHESIS REGULATORY FACTOR (PBP3) FROM STREPTOCOCCUS PNEUMONIAE
Keywords FIVE-STRANDED ANTIPARALLEL BETA-SHEET, OMEGA-LIKE LOOP, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1XP4     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   D-ALANYL-D-ALANINE CARBOXYPEPTIDASE  A 369 2749 72
2  Protein   D-ALANYL-D-ALANINE CARBOXYPEPTIDASE  B 339 2530 72
3  Protein   D-ALANYL-D-ALANINE CARBOXYPEPTIDASE  C 359 2678 72
4  Protein   D-ALANYL-D-ALANINE CARBOXYPEPTIDASE  D 321 2408 72
5  Ligand   D-ALANYL-D-ALANINE CARBOXYPEPTIDASE  A 5 0 9
6  Ligand   D-ALANYL-D-ALANINE CARBOXYPEPTIDASE  B 5 0 9
7  Ligand   D-ALANYL-D-ALANINE CARBOXYPEPTIDASE  C 5 0 9
8  Ligand   D-ALANYL-D-ALANINE CARBOXYPEPTIDASE  D 5 0 9
9 Water     461 0 461
total       1869 10365 785
Proteins
Unit 1 PHE25 THR26 ILE27 ALA28 ALA29 LYS30 HIS31 ALA32 ILE33 ALA34 VAL35 GLU36 ALA37 ASN38 THR39 GLY40 LYS41 ILE42 LEU43 TYR44 GLU45 LYS46 ASP47 ALA48 THR49 GLN50 PRO51 VAL52 GLU53 ILE54 ALA55 SER56 ILE57 THR58 LYS59 LEU60 ILE61 THR62 VAL63 TYR64 LEU65 VAL66 TYR67 GLU68 ALA69 LEU70 GLU71 ASN72 GLY73 SER74 ILE75 THR76 LEU77 SER78 THR79 PRO80 VAL81 ASP82 ILE83 SER84 ASP85 TYR86 PRO87 TYR88 GLN89 LEU90 THR91 THR92 ASN93 SER94 GLU95 ALA96 SER97 ASN98 ILE99 PRO100 MSE101 GLU102 ALA103 ARG104 ASN105 TYR106 THR107 VAL108 GLU109 GLU110 LEU111 LEU112 GLU113 ALA114 THR115 LEU116 VAL117 SER118 SER119 ALA120 ASN121 SER122 ALA123 ALA124 ILE125 ALA126 LEU127 ALA128 GLU129 LYS130 ILE131 ALA132 GLY133 SER134 GLU135 LYS136 ASP137 PHE138 VAL139 ASP140 MSE141 MSE142 ARG143 ALA144 LYS145 LEU146 LEU147 GLU148 TRP149 GLY150 ILE151 GLN152 ASP153 ALA154 THR155 VAL156 VAL157 ASN158 THR159 THR160 GLY161 LEU162 ASN163 ASN164 GLU165 THR166 LEU167 GLY168 ASP169 ASN170 ILE171 TYR172 PRO173 GLY174 SER175 LYS176 LYS177 ASP178 GLU179 GLU180 ASN181 LYS182 LEU183 SER184 ALA185 TYR186 ASP187 VAL188 ALA189 ILE190 VAL191 ALA192 ARG193 ASN194 LEU195 ILE196 LYS197 LYS198 TYR199 PRO200 GLN201 VAL202 LEU203 GLU204 ILE205 THR206 LYS207 LYS208 PRO209 SER210 SER211 THR212 PHE213 ALA214 GLY215 MSE216 THR217 ILE218 THR219 SER220 THR221 ASN222 TYR223 MSE224 LEU225 GLU226 GLY227 MSE228 PRO229 ALA230 TYR231 ARG232 GLY233 GLY234 PHE235 ASP236 GLY237 LEU238 LYS239 THR240 GLY241 THR242 THR243 ASP244 LYS245 ALA246 GLY247 GLU248 SER249 PHE250 VAL251 GLY252 THR253 THR254 VAL255 GLU256 LYS257 GLY258 MSE259 ARG260 VAL261 ILE262 THR263 VAL264 VAL265 LEU266 ASN267 ALA268 ASP269 HIS270 GLN271 ASP272 ASN273 ASN274 PRO275 TYR276 ALA277 ARG278 PHE279 THR280 ALA281 THR282 SER283 SER284 LEU285 MSE286 ASP287 TYR288 ILE289 SER290 SER291 THR292 PHE293 THR294 LEU295 ARG296 LYS297 ILE298 VAL299 GLN300 GLN301 GLY302 ASP303 ALA304 TYR305 GLN306 ASP307 SER308 LYS309 ALA310 PRO311 VAL312 GLN313 ASP314 GLY315 LYS316 GLU317 ASP318 THR319 VAL320 ILE321 ALA322 VAL323 ALA324 PRO325 GLU326 ASP327 ILE328 TYR329 LEU330 ILE331 GLU332 ARG333 VAL334 GLY335 ASN336 GLN337 SER338 SER339 GLN340 SER341 VAL342 GLN343 PHE344 THR345 PRO346 ASP347 SER348 LYS349 ALA350 ILE351 PRO352 ALA353 PRO354 LEU355 GLU356 ALA357 GLY358 THR359 VAL360 VAL361 GLY362 HIS363 LEU364 THR365 TYR366 GLU367 ASP368 LYS369 ASP370 LEU371 ILE372 GLY373 GLN374 GLY375 TYR376 ILE377 THR378 THR379 GLU380 ARG381 PRO382 SER383 PHE384 GLU385 MSE386 VAL387 ALA388 ASP389 LYS390 LYS391 ILE392 GLU393
Unit 2 PHE25 THR26 ILE27 ALA28 ALA29 LYS30 HIS31 ALA32 ILE33 ALA34 VAL35 GLU36 ALA37 ASN38 THR39 GLY40 LYS41 ILE42 LEU43 TYR44 GLU45 LYS46 ASP47 ALA48 THR49 GLN50 PRO51 VAL52 GLU53 ILE54 ALA55 SER56 ILE57 THR58 LYS59 LEU60 ILE61 THR62 VAL63 TYR64 LEU65 VAL66 TYR67 GLU68 ALA69 LEU70 GLU71 ASN72 GLY73 SER74 ILE75 THR76 LEU77 SER78 THR79 PRO80 VAL81 ASP82 ILE83 SER84 ASP85 TYR86 PRO87 TYR88 GLN89 LEU90 THR91 THR92 ASN93 SER94 GLU95 ALA96 SER97 ASN98 ILE99 PRO100 MSE101 GLU102 ALA103 ARG104 ASN105 TYR106 THR107 VAL108 GLU109 GLU110 LEU111 LEU112 GLU113 ALA114 THR115 LEU116 VAL117 SER118 SER119 ALA120 ASN121 SER122 ALA123 ALA124 ILE125 ALA126 LEU127 ALA128 GLU129 LYS130 ILE131 ALA132 GLY133 SER134 GLU135 LYS136 ASP137 PHE138 VAL139 ASP140 MSE141 MSE142 ARG143 ALA144 LYS145 LEU146 LEU147 GLU148 TRP149 GLY150 ILE151 GLN152 ASP153 ALA154 THR155 VAL156 VAL157 ASN158 THR159 THR160 GLY161 LEU162 ASN163 ASN164 GLU165 THR166 LEU167 GLY168 ASP169 ASN170 ILE171 TYR172 PRO173 GLY174 SER175 LYS176 LYS177 ASP178 GLU179 GLU180 ASN181 LYS182 LEU183 SER184 ALA185 TYR186 ASP187 VAL188 ALA189 ILE190 VAL191 ALA192 ARG193 ASN194 LEU195 ILE196 LYS197 LYS198 TYR199 PRO200 GLN201 VAL202 LEU203 GLU204 ILE205 THR206 LYS207 LYS208 PRO209 SER210 SER211 THR212 PHE213 ALA214 GLY215 MSE216 THR217 ILE218 THR219 SER220 THR221 ASN222 TYR223 MSE224 LEU225 GLU226 GLY227 MSE228 PRO229 ALA230 TYR231 ARG232 GLY233 GLY234 PHE235 ASP236 GLY237 LEU238 LYS239 THR240 GLY241 THR242 THR243 ASP244 LYS245 ALA246 GLY247 GLU248 SER249 PHE250 VAL251 GLY252 THR253 THR254 VAL255 GLU256 LYS257 GLY258 MSE259 ARG260 VAL261 ILE262 THR263 VAL264 VAL265 LEU266 ASN267 ALA268 ASP269 HIS270 PRO275 TYR276 ALA277 ARG278 PHE279 THR280 ALA281 THR282 SER283 SER284 LEU285 MSE286 ASP287 TYR288 ILE289 SER290 SER291 THR292 PHE293 THR294 LEU295 ARG296 LYS297 ILE298 VAL299 GLN300 GLN301 GLY302 ASP303 ALA304 TYR305 GLN306 ASP307 SER308 ILE321 ALA322 VAL323 ALA324 PRO325 GLU326 ASP327 ILE328 TYR329 LEU330 ILE331 GLU332 ARG333 VAL334 GLY335 ASN336 GLN337 SER338 SER339 GLN340 SER341 VAL342 GLN343 PHE344 THR345 PRO346 ASP347 VAL360 VAL361 GLY362 HIS363 LEU364 THR365 TYR366 GLU367 ASP368 LYS369 ASP370 LEU371 ILE372 GLY373 GLN374 GLY375 TYR376 ILE377 THR378 THR379 GLU380 ARG381 PRO382 SER383 PHE384 GLU385 MSE386 VAL387 ALA388 ASP389 LYS390 LYS391
Unit 3 PHE25 THR26 ILE27 ALA28 ALA29 LYS30 HIS31 ALA32 ILE33 ALA34 VAL35 GLU36 ALA37 ASN38 THR39 GLY40 LYS41 ILE42 LEU43 TYR44 GLU45 LYS46 ASP47 ALA48 THR49 GLN50 PRO51 VAL52 GLU53 ILE54 ALA55 SER56 ILE57 THR58 LYS59 LEU60 ILE61 THR62 VAL63 TYR64 LEU65 VAL66 TYR67 GLU68 ALA69 LEU70 GLU71 ASN72 GLY73 SER74 ILE75 THR76 LEU77 SER78 THR79 PRO80 VAL81 ASP82 ILE83 SER84 ASP85 TYR86 PRO87 TYR88 GLN89 LEU90 THR91 THR92 ASN93 SER94 GLU95 ALA96 SER97 ASN98 ILE99 PRO100 MSE101 GLU102 ALA103 ARG104 ASN105 TYR106 THR107 VAL108 GLU109 GLU110 LEU111 LEU112 GLU113 ALA114 THR115 LEU116 VAL117 SER118 SER119 ALA120 ASN121 SER122 ALA123 ALA124 ILE125 ALA126 LEU127 ALA128 GLU129 LYS130 ILE131 ALA132 GLY133 SER134 GLU135 LYS136 ASP137 PHE138 VAL139 ASP140 MSE141 MSE142 ARG143 ALA144 LYS145 LEU146 LEU147 GLU148 TRP149 GLY150 ILE151 GLN152 ASP153 ALA154 THR155 VAL156 VAL157 ASN158 THR159 THR160 GLY161 LEU162 ASN163 ASN164 GLU165 THR166 LEU167 GLY168 ASP169 ASN170 ILE171 TYR172 PRO173 GLY174 SER175 LYS176 LYS177 ASP178 GLU179 GLU180 ASN181 LYS182 LEU183 SER184 ALA185 TYR186 ASP187 VAL188 ALA189 ILE190 VAL191 ALA192 ARG193 ASN194 LEU195 ILE196 LYS197 LYS198 TYR199 PRO200 GLN201 VAL202 LEU203 GLU204 ILE205 THR206 LYS207 LYS208 PRO209 SER210 SER211 THR212 PHE213 ALA214 GLY215 MSE216 THR217 ILE218 THR219 SER220 THR221 ASN222 TYR223 MSE224 LEU225 GLU226 GLY227 MSE228 PRO229 ALA230 TYR231 ARG232 GLY233 GLY234 PHE235 ASP236 GLY237 LEU238 LYS239 THR240 GLY241 THR242 THR243 ASP244 LYS245 ALA246 GLY247 GLU248 SER249 PHE250 VAL251 GLY252 THR253 THR254 VAL255 GLU256 LYS257 GLY258 MSE259 ARG260 VAL261 ILE262 THR263 VAL264 VAL265 LEU266 ASN267 ALA268 ASP269 HIS270 GLN271 ASP272 ASN273 ASN274 PRO275 TYR276 ALA277 ARG278 PHE279 THR280 ALA281 THR282 SER283 SER284 LEU285 MSE286 ASP287 TYR288 ILE289 SER290 SER291 THR292 PHE293 THR294 LEU295 ARG296 LYS297 ILE298 VAL299 GLN300 GLN301 GLY302 ASP303 ALA304 TYR305 GLN306 ASP307 SER308 LYS309 ALA310 PRO311 VAL312 GLN313 ASP314 GLY315 LYS316 GLU317 ASP318 THR319 VAL320 ILE321 ALA322 VAL323 ALA324 PRO325 GLU326 ASP327 ILE328 TYR329 LEU330 ILE331 GLU332 ARG333 VAL334 GLY335 ASN336 GLN340 SER341 VAL342 GLN343 PHE344 THR345 PRO346 ASP347 SER348 LEU355 GLU356 ALA357 GLY358 THR359 VAL360 VAL361 GLY362 HIS363 LEU364 THR365 TYR366 GLU367 ASP368 LYS369 ASP370 LEU371 ILE372 GLY373 GLN374 GLY375 TYR376 ILE377 THR378 THR379 GLU380 ARG381 PRO382 SER383 PHE384 GLU385 MSE386 VAL387 ALA388 ASP389 LYS390 LYS391 ILE392
Unit 4 PHE25 THR26 ILE27 ALA28 ALA29 LYS30 HIS31 ALA32 ILE33 ALA34 VAL35 GLU36 ALA37 ASN38 THR39 GLY40 LYS41 ILE42 LEU43 TYR44 GLU45 LYS46 ASP47 ALA48 THR49 GLN50 PRO51 VAL52 GLU53 ILE54 ALA55 SER56 ILE57 THR58 LYS59 LEU60 ILE61 THR62 VAL63 TYR64 LEU65 VAL66 TYR67 GLU68 ALA69 LEU70 GLU71 ASN72 GLY73 SER74 ILE75 THR76 LEU77 SER78 THR79 PRO80 VAL81 ASP82 ILE83 SER84 ASP85 TYR86 PRO87 TYR88 GLN89 LEU90 THR91 THR92 ASN93 ILE99 PRO100 MSE101 GLU102 ALA103 ARG104 ASN105 TYR106 THR107 VAL108 GLU109 GLU110 LEU111 LEU112 GLU113 ALA114 THR115 LEU116 VAL117 SER118 SER119 ALA120 ASN121 SER122 ALA123 ALA124 ILE125 ALA126 LEU127 ALA128 GLU129 LYS130 ILE131 ALA132 GLY133 SER134 GLU135 LYS136 ASP137 PHE138 VAL139 ASP140 MSE141 MSE142 ARG143 ALA144 LYS145 LEU146 LEU147 GLU148 TRP149 GLY150 ILE151 GLN152 ASP153 ALA154 THR155 VAL156 VAL157 ASN158 THR159 THR160 GLY161 LEU162 ASN163 ASN164 GLU165 THR166 LEU167 GLY168 ASP169 ASN170 ILE171 TYR172 PRO173 GLY174 SER175 LYS176 LYS177 ASP178 GLU179 GLU180 ASN181 LYS182 LEU183 SER184 ALA185 TYR186 ASP187 VAL188 ALA189 ILE190 VAL191 ALA192 ARG193 ASN194 LEU195 ILE196 LYS197 LYS198 TYR199 PRO200 GLN201 VAL202 LEU203 GLU204 ILE205 THR206 LYS207 LYS208 PRO209 SER210 SER211 THR212 PHE213 ALA214 GLY215 MSE216 THR217 ILE218 THR219 SER220 THR221 ASN222 TYR223 MSE224 LEU225 GLU226 GLY227 MSE228 PRO229 ALA230 TYR231 ARG232 GLY233 GLY234 PHE235 ASP236 GLY237 LEU238 LYS239 THR240 GLY241 THR242 THR243 ASP244 LYS245 ALA246 GLY247 GLU248 SER249 PHE250 VAL251 GLY252 THR253 THR254 VAL255 GLU256 LYS257 GLY258 MSE259 ARG260 VAL261 ILE262 THR263 VAL264 VAL265 LEU266 ASN267 ALA268 ASP269 HIS270 PRO275 TYR276 ALA277 ARG278 PHE279 THR280 ALA281 THR282 SER283 SER284 LEU285 MSE286 ASP287 TYR288 ILE289 SER290 SER291 THR292 PHE293 THR294 LEU295 ARG296 LYS297 ILE298 VAL299 GLN300 GLN301 GLY302 ASP303 ALA304 TYR305 GLN306 ASP307 SER308 LYS309 ALA322 VAL323 ALA324 PRO325 GLU326 ASP327 ILE328 TYR329 LEU330 ILE331 GLU332 ARG333 VAL334 GLN340 SER341 VAL342 GLN343 PHE344 THR345 PRO346 ASP347 HIS363 LEU364 THR365 TYR366 GLU367 ASP368 LYS369 ASP370 LEU371 ILE372 GLY373 GLN374 GLY375 TYR376 ILE377 THR378 THR379 GLU380 ARG381 PRO382 SER383 PHE384 GLU385 MSE386
Ligands
Unit 5 SO4464 IOD468 IOD469 IOD470 IOD471
Unit 6 SO4465 IOD472 IOD473 IOD474 IOD475
Unit 7 SO4466 IOD476 IOD477 IOD478 IOD479
Unit 8 SO4467 IOD480 IOD481 IOD482 IOD483
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany