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Title | PHI29 DNA POLYMERASE SSDNA COMPLEX, MONOCLINIC CRYSTAL FORM | |
Keywords | DNA POLYMERASE, PROTEIN-PRIMED, STRAND DISPLACEMENT, PROCESS REPLICATION, TRANSFERASE-DNA COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 1XI1 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Other macromolecule | 5'-D(P*TP*TP*TP*TP*T)-3' | C | 3 | 60 | 0 |
2 | Other macromolecule | 5'-D(P*TP*TP*TP*TP*T)-3' | D | 3 | 60 | 0 |
3 | Protein | DNA POLYMERASE | A | 571 | 4668 | 0 |
4 | Protein | DNA POLYMERASE | B | 571 | 4668 | 0 |
5 | Ligand | DNA POLYMERASE | A | 1 | 0 | 1 |
6 | Ligand | DNA POLYMERASE | B | 1 | 0 | 1 |
7 | Water | 235 | 0 | 235 | ||
total | 1385 | 9456 | 237 |
Unit 3 | PRO5 ARG6 LYS7 MET8 TYR9 SER10 CYS11 ALA12 PHE13 GLU14 THR15 THR16 THR17 LYS18 VAL19 GLU20 ASP21 CYS22 ARG23 VAL24 TRP25 ALA26 TYR27 GLY28 TYR29 MET30 ASN31 ILE32 GLU33 ASP34 HIS35 SER36 GLU37 TYR38 LYS39 ILE40 GLY41 ASN42 SER43 LEU44 ASP45 GLU46 PHE47 MET48 ALA49 TRP50 VAL51 LEU52 LYS53 VAL54 GLN55 ALA56 ASP57 LEU58 TYR59 PHE60 HIS61 ASN62 LEU63 LYS64 PHE65 ALA66 GLY67 ALA68 PHE69 ILE70 ILE71 ASN72 TRP73 LEU74 GLU75 ARG76 ASN77 GLY78 PHE79 LYS80 TRP81 SER82 ALA83 ASP84 GLY85 LEU86 PRO87 ASN88 THR89 TYR90 ASN91 THR92 ILE93 ILE94 SER95 ARG96 MET97 GLY98 GLN99 TRP100 TYR101 MET102 ILE103 ASP104 ILE105 CYS106 LEU107 GLY108 TYR109 LYS110 GLY111 LYS112 ARG113 LYS114 ILE115 HIS116 THR117 VAL118 ILE119 TYR120 ASP121 SER122 LEU123 LYS124 LYS125 LEU126 PRO127 PHE128 PRO129 VAL130 LYS131 LYS132 ILE133 ALA134 LYS135 ASP136 PHE137 LYS138 LEU139 THR140 VAL141 LEU142 LYS143 GLY144 ASP145 ILE146 ASP147 TYR148 HIS149 LYS150 GLU151 ARG152 PRO153 VAL154 GLY155 TYR156 LYS157 ILE158 THR159 PRO160 GLU161 GLU162 TYR163 ALA164 TYR165 ILE166 LYS167 ASN168 ASP169 ILE170 GLN171 ILE172 ILE173 ALA174 GLU175 ALA176 LEU177 LEU178 ILE179 GLN180 PHE181 LYS182 GLN183 GLY184 LEU185 ASP186 ARG187 MET188 THR189 ALA190 GLY191 SER192 ASP193 SER194 LEU195 LYS196 GLY197 PHE198 LYS199 ASP200 ILE201 ILE202 THR203 THR204 LYS205 LYS206 PHE207 LYS208 LYS209 VAL210 PHE211 PRO212 THR213 LEU214 SER215 LEU216 GLY217 LEU218 ASP219 LYS220 GLU221 VAL222 ARG223 TYR224 ALA225 TYR226 ARG227 GLY228 GLY229 PHE230 THR231 TRP232 LEU233 ASN234 ASP235 ARG236 PHE237 LYS238 GLU239 LYS240 GLU241 ILE242 GLY243 GLU244 GLY245 MET246 VAL247 PHE248 ASP249 VAL250 ASN251 SER252 LEU253 TYR254 PRO255 ALA256 GLN257 MET258 TYR259 SER260 ARG261 LEU262 LEU263 PRO264 TYR265 GLY266 GLU267 PRO268 ILE269 VAL270 PHE271 GLU272 GLY273 LYS274 TYR275 VAL276 TRP277 ASP278 GLU279 ASP280 TYR281 PRO282 LEU283 HIS284 ILE285 GLN286 HIS287 ILE288 ARG289 CYS290 GLU291 PHE292 GLU293 LEU294 LYS295 GLU296 GLY297 TYR298 ILE299 PRO300 THR301 ILE302 GLN303 ILE304 LYS305 ARG306 SER307 ARG308 PHE309 TYR310 LYS311 GLY312 ASN313 GLU314 TYR315 LEU316 LYS317 SER318 SER319 GLY320 GLY321 GLU322 ILE323 ALA324 ASP325 LEU326 TRP327 LEU328 SER329 ASN330 VAL331 ASP332 LEU333 GLU334 LEU335 MET336 LYS337 GLU338 HIS339 TYR340 ASP341 LEU342 TYR343 ASN344 VAL345 GLU346 TYR347 ILE348 SER349 GLY350 LEU351 LYS352 PHE353 LYS354 ALA355 THR356 THR357 GLY358 LEU359 PHE360 LYS361 ASP362 PHE363 ILE364 ASP365 LYS366 TRP367 THR368 TYR369 ILE370 LYS371 THR372 THR373 SER374 GLU375 GLY376 ALA377 ILE378 LYS379 GLN380 LEU381 ALA382 LYS383 LEU384 MET385 LEU386 ASN387 SER388 LEU389 TYR390 GLY391 LYS392 PHE393 ALA394 SER395 ASN396 PRO397 ASP398 VAL399 THR400 GLY401 LYS402 VAL403 PRO404 TYR405 LEU406 LYS407 GLU408 ASN409 GLY410 ALA411 LEU412 GLY413 PHE414 ARG415 LEU416 GLY417 GLU418 GLU419 GLU420 THR421 LYS422 ASP423 PRO424 VAL425 TYR426 THR427 PRO428 MET429 GLY430 VAL431 PHE432 ILE433 THR434 ALA435 TRP436 ALA437 ARG438 TYR439 THR440 THR441 ILE442 THR443 ALA444 ALA445 GLN446 ALA447 CYS448 TYR449 ASP450 ARG451 ILE452 ILE453 TYR454 CYS455 ASP456 THR457 ASP458 SER459 ILE460 HIS461 LEU462 THR463 GLY464 THR465 GLU466 ILE467 PRO468 ASP469 VAL470 ILE471 LYS472 ASP473 ILE474 VAL475 ASP476 PRO477 LYS478 LYS479 LEU480 GLY481 TYR482 TRP483 ALA484 HIS485 GLU486 SER487 THR488 PHE489 LYS490 ARG491 ALA492 LYS493 TYR494 LEU495 ARG496 GLN497 LYS498 THR499 TYR500 ILE501 GLN502 ASP503 ILE504 TYR505 MET506 LYS507 GLU508 VAL509 ASP510 GLY511 LYS512 LEU513 VAL514 GLU515 GLY516 SER517 PRO518 ASP519 ASP520 TYR521 THR522 ASP523 ILE524 LYS525 PHE526 SER527 VAL528 LYS529 CYS530 ALA531 GLY532 MET533 THR534 ASP535 LYS536 ILE537 LYS538 LYS539 GLU540 VAL541 THR542 PHE543 GLU544 ASN545 PHE546 LYS547 VAL548 GLY549 PHE550 SER551 ARG552 LYS553 MET554 LYS555 PRO556 LYS557 PRO558 VAL559 GLN560 VAL561 PRO562 GLY563 GLY564 VAL565 VAL566 LEU567 VAL568 ASP569 ASP570 THR571 PHE572 THR573 ILE574 LYS575 |
Unit 4 | PRO5 ARG6 LYS7 MET8 TYR9 SER10 CYS11 ALA12 PHE13 GLU14 THR15 THR16 THR17 LYS18 VAL19 GLU20 ASP21 CYS22 ARG23 VAL24 TRP25 ALA26 TYR27 GLY28 TYR29 MET30 ASN31 ILE32 GLU33 ASP34 HIS35 SER36 GLU37 TYR38 LYS39 ILE40 GLY41 ASN42 SER43 LEU44 ASP45 GLU46 PHE47 MET48 ALA49 TRP50 VAL51 LEU52 LYS53 VAL54 GLN55 ALA56 ASP57 LEU58 TYR59 PHE60 HIS61 ASN62 LEU63 LYS64 PHE65 ALA66 GLY67 ALA68 PHE69 ILE70 ILE71 ASN72 TRP73 LEU74 GLU75 ARG76 ASN77 GLY78 PHE79 LYS80 TRP81 SER82 ALA83 ASP84 GLY85 LEU86 PRO87 ASN88 THR89 TYR90 ASN91 THR92 ILE93 ILE94 SER95 ARG96 MET97 GLY98 GLN99 TRP100 TYR101 MET102 ILE103 ASP104 ILE105 CYS106 LEU107 GLY108 TYR109 LYS110 GLY111 LYS112 ARG113 LYS114 ILE115 HIS116 THR117 VAL118 ILE119 TYR120 ASP121 SER122 LEU123 LYS124 LYS125 LEU126 PRO127 PHE128 PRO129 VAL130 LYS131 LYS132 ILE133 ALA134 LYS135 ASP136 PHE137 LYS138 LEU139 THR140 VAL141 LEU142 LYS143 GLY144 ASP145 ILE146 ASP147 TYR148 HIS149 LYS150 GLU151 ARG152 PRO153 VAL154 GLY155 TYR156 LYS157 ILE158 THR159 PRO160 GLU161 GLU162 TYR163 ALA164 TYR165 ILE166 LYS167 ASN168 ASP169 ILE170 GLN171 ILE172 ILE173 ALA174 GLU175 ALA176 LEU177 LEU178 ILE179 GLN180 PHE181 LYS182 GLN183 GLY184 LEU185 ASP186 ARG187 MET188 THR189 ALA190 GLY191 SER192 ASP193 SER194 LEU195 LYS196 GLY197 PHE198 LYS199 ASP200 ILE201 ILE202 THR203 THR204 LYS205 LYS206 PHE207 LYS208 LYS209 VAL210 PHE211 PRO212 THR213 LEU214 SER215 LEU216 GLY217 LEU218 ASP219 LYS220 GLU221 VAL222 ARG223 TYR224 ALA225 TYR226 ARG227 GLY228 GLY229 PHE230 THR231 TRP232 LEU233 ASN234 ASP235 ARG236 PHE237 LYS238 GLU239 LYS240 GLU241 ILE242 GLY243 GLU244 GLY245 MET246 VAL247 PHE248 ASP249 VAL250 ASN251 SER252 LEU253 TYR254 PRO255 ALA256 GLN257 MET258 TYR259 SER260 ARG261 LEU262 LEU263 PRO264 TYR265 GLY266 GLU267 PRO268 ILE269 VAL270 PHE271 GLU272 GLY273 LYS274 TYR275 VAL276 TRP277 ASP278 GLU279 ASP280 TYR281 PRO282 LEU283 HIS284 ILE285 GLN286 HIS287 ILE288 ARG289 CYS290 GLU291 PHE292 GLU293 LEU294 LYS295 GLU296 GLY297 TYR298 ILE299 PRO300 THR301 ILE302 GLN303 ILE304 LYS305 ARG306 SER307 ARG308 PHE309 TYR310 LYS311 GLY312 ASN313 GLU314 TYR315 LEU316 LYS317 SER318 SER319 GLY320 GLY321 GLU322 ILE323 ALA324 ASP325 LEU326 TRP327 LEU328 SER329 ASN330 VAL331 ASP332 LEU333 GLU334 LEU335 MET336 LYS337 GLU338 HIS339 TYR340 ASP341 LEU342 TYR343 ASN344 VAL345 GLU346 TYR347 ILE348 SER349 GLY350 LEU351 LYS352 PHE353 LYS354 ALA355 THR356 THR357 GLY358 LEU359 PHE360 LYS361 ASP362 PHE363 ILE364 ASP365 LYS366 TRP367 THR368 TYR369 ILE370 LYS371 THR372 THR373 SER374 GLU375 GLY376 ALA377 ILE378 LYS379 GLN380 LEU381 ALA382 LYS383 LEU384 MET385 LEU386 ASN387 SER388 LEU389 TYR390 GLY391 LYS392 PHE393 ALA394 SER395 ASN396 PRO397 ASP398 VAL399 THR400 GLY401 LYS402 VAL403 PRO404 TYR405 LEU406 LYS407 GLU408 ASN409 GLY410 ALA411 LEU412 GLY413 PHE414 ARG415 LEU416 GLY417 GLU418 GLU419 GLU420 THR421 LYS422 ASP423 PRO424 VAL425 TYR426 THR427 PRO428 MET429 GLY430 VAL431 PHE432 ILE433 THR434 ALA435 TRP436 ALA437 ARG438 TYR439 THR440 THR441 ILE442 THR443 ALA444 ALA445 GLN446 ALA447 CYS448 TYR449 ASP450 ARG451 ILE452 ILE453 TYR454 CYS455 ASP456 THR457 ASP458 SER459 ILE460 HIS461 LEU462 THR463 GLY464 THR465 GLU466 ILE467 PRO468 ASP469 VAL470 ILE471 LYS472 ASP473 ILE474 VAL475 ASP476 PRO477 LYS478 LYS479 LEU480 GLY481 TYR482 TRP483 ALA484 HIS485 GLU486 SER487 THR488 PHE489 LYS490 ARG491 ALA492 LYS493 TYR494 LEU495 ARG496 GLN497 LYS498 THR499 TYR500 ILE501 GLN502 ASP503 ILE504 TYR505 MET506 LYS507 GLU508 VAL509 ASP510 GLY511 LYS512 LEU513 VAL514 GLU515 GLY516 SER517 PRO518 ASP519 ASP520 TYR521 THR522 ASP523 ILE524 LYS525 PHE526 SER527 VAL528 LYS529 CYS530 ALA531 GLY532 MET533 THR534 ASP535 LYS536 ILE537 LYS538 LYS539 GLU540 VAL541 THR542 PHE543 GLU544 ASN545 PHE546 LYS547 VAL548 GLY549 PHE550 SER551 ARG552 LYS553 MET554 LYS555 PRO556 LYS557 PRO558 VAL559 GLN560 VAL561 PRO562 GLY563 GLY564 VAL565 VAL566 LEU567 VAL568 ASP569 ASP570 THR571 PHE572 THR573 ILE574 LYS575 |
Unit 1 | DT3 DT4 DT5 |
Unit 2 | DT3 DT4 DT5 |
Unit 5 | MG576 |
Unit 6 | MG576 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |