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Sequence, Chains, Asymmetric and Biological Units

Title INTERACTION OF ERA,A GTPASE PROTEIN, WITH THE 3'MINOR DOMAIN 16S RRNA WITHIN THE THERMUS THERMOPHILUS 30S SUBUNIT.
Keywords INTERACTION OF ERA PROTEIN WITH THE 3'MINOR DOMAIN OF 16S RR STRUCTURAL PROTEIN-RNA COMPLEX
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1X1L     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA    A 130 130 0
2  Protein   GTP-BINDING PROTEIN ERA  X 292 292 0
total       422 422 0

Proteins
Unit 2 ASP4 LYS5 SER6 TYR7 CYS8 GLY9 PHE10 ILE11 ALA12 ILE13 VAL14 GLY15 ARG16 PRO17 ASN18 VAL19 GLY20 LYS21 SER22 THR23 LEU24 LEU25 ASN26 LYS27 LEU28 LEU29 GLY30 GLN31 LYS32 ILE33 SER34 ILE35 THR36 SER37 ARG38 LYS39 ALA40 GLN41 THR42 THR43 ARG44 HIS45 ARG46 ILE47 VAL48 GLY49 ILE50 HIS51 THR52 GLU53 GLY54 ALA55 TYR56 GLN57 ALA58 ILE59 TYR60 VAL61 ASP62 THR63 PRO64 GLY65 LEU66 HIS67 MET68 GLU69 GLU70 LYS71 ARG72 ALA73 ILE74 ASN75 ARG76 LEU77 MET78 ASN79 LYS80 ALA81 ALA82 SER83 SER84 SER85 ILE86 GLY87 ASP88 VAL89 GLU90 LEU91 VAL92 ILE93 PHE94 VAL95 VAL96 GLU97 GLY98 THR99 ARG100 TRP101 THR102 PRO103 ASP104 ASP105 GLU106 MET107 VAL108 LEU109 ASN110 LYS111 LEU112 ARG113 GLU114 GLY115 LYS116 ALA117 PRO118 VAL119 ILE120 LEU121 ALA122 VAL123 ASN124 LYS125 VAL126 ASP127 ASN128 VAL129 GLN130 GLU131 LYS132 ALA133 ASP134 LEU135 LEU136 PRO137 HIS138 LEU139 GLN140 PHE141 LEU142 ALA143 SER144 GLN145 MET146 ASN147 PHE148 LEU149 ASP150 ILE151 VAL152 PRO153 ILE154 SER155 ALA156 GLU157 THR158 GLY159 LEU160 ASN161 VAL162 ASP163 THR164 ILE165 ALA166 ALA167 ILE168 VAL169 ARG170 LYS171 HIS172 LEU173 PRO174 GLU175 ALA176 THR177 HIS178 HIS179 PHE180 PRO181 GLU182 ASP183 TYR184 ILE185 THR186 ASP187 ARG188 SER189 GLN190 ARG191 PHE192 MET193 ALA194 SER195 GLU196 ILE197 ILE198 ARG199 GLU200 LYS201 LEU202 MET203 ARG204 PHE205 LEU206 GLY207 ALA208 GLU209 LEU210 PRO211 TYR212 SER213 VAL214 THR215 VAL216 GLU217 ILE218 GLU219 ARG220 PHE221 VAL222 SER223 ASN224 GLU225 ARG226 GLY227 GLY228 TYR229 ASP230 ILE231 ASN232 GLY233 LEU234 ILE235 LEU236 VAL237 GLU238 ARG239 GLU240 GLY241 GLN242 LYS243 LYS244 MET245 VAL246 ILE247 GLY248 ASN249 LYS250 GLY251 ALA252 LYS253 ILE254 LYS255 THR256 ILE257 GLY258 ILE259 GLU260 ALA261 ARG262 LYS263 ASP264 MET265 GLN266 GLU267 MET268 PHE269 GLU270 ALA271 PRO272 VAL273 HIS274 LEU275 GLU276 LEU277 TRP278 VAL279 LYS280 VAL281 LYS282 SER283 GLY284 TRP285 ALA286 ASP287 ASP288 GLU289 ARG290 ALA291 LEU292 ARG293 SER294 LEU295

Nucleic acids
Unit 1 C400 G401 C402 C403 C404 G405 U406 C407 A408 C409 G410 C411 C412 A413 U414 G415 G416 G417 A418 G419 C420 G421 G422 G423 C424 U425 C426 U427 A428 C429 C430 C431 G432 A433 A434 G435 U436 C437 G438 C439 C440 G441 G442 G443 A446 G447 C448 C449 U450 A451 C452 G453 G454 G455 C459 A460 G461 G462 C463 G464 C465 C466 G467 A468 G469 G470 G471 U472 A473 G474 G475 G476 C477 C478 C479 G480 U481 G482 A483 C484 U485 G486 G487 G488 G489 C490 G491 A492 A493 G494 U495 C496 G497 U498 A499 A500 C501 A502 A503 G504 G505 U506 A507 G508 C509 U510 G511 U512 A513 C514 C515 G516 G517 A518 A519 G520 G521 U522 G523 C524 G525 G526 C527 U528 G529 G530 A531 U532 C533 A534

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany