Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S
Keywords CONTACT SITES OF ERA PROTEIN ON THE 30S RIBOSOMAL SUBUNIT, S PROTEIN-RNA COMPLEX
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1X18     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA    A 11 11 0
2  DNA    B 31 31 0
3  DNA    C 20 20 0
4  DNA    D 24 24 0
5  Protein   30S RIBOSOMAL PROTEIN S2  E 231 231 0
6  Protein   30S RIBOSOMAL PROTEIN S7  F 154 154 0
7  Protein   30S RIBOSOMAL PROTEIN S11  G 119 119 0
8  Protein   30S RIBOSOMAL PROTEIN S18  H 73 73 0
9  Protein   GTP-BINDING PROTEIN ERA  X 292 292 0
total       955 955 0

Proteins
Unit 5 VAL7 LYS8 GLU9 LEU10 LEU11 GLU12 ALA13 GLY14 VAL15 HIS16 PHE17 GLY18 HIS19 GLU20 ARG21 LYS22 ARG23 TRP24 ASN25 PRO26 LYS27 PHE28 ALA29 ARG30 TYR31 ILE32 TYR33 ALA34 GLU35 ARG36 ASN37 GLY38 ILE39 HIS40 ILE41 ILE42 ASP43 LEU44 GLN45 LYS46 THR47 MET48 GLU49 GLU50 LEU51 GLU52 ARG53 THR54 PHE55 ARG56 PHE57 ILE58 GLU59 ASP60 LEU61 ALA62 MET63 ARG64 GLY65 GLY66 THR67 ILE68 LEU69 PHE70 VAL71 GLY72 THR73 LYS74 LYS75 GLN76 ALA77 GLN78 ASP79 ILE80 VAL81 ARG82 MET83 GLU84 ALA85 GLU86 ARG87 ALA88 GLY89 MET90 PRO91 TYR92 VAL93 ASN94 GLN95 ARG96 TRP97 LEU98 GLY99 GLY100 MET101 LEU102 THR103 ASN104 PHE105 LYS106 THR107 ILE109 GLN110 ARG111 VAL112 HIS113 ARG114 LEU115 GLU116 GLU117 LEU118 GLU119 ALA120 LEU121 PHE122 ALA123 SER124 PRO125 GLU126 ILE127 GLU128 GLU129 ARG130 PRO131 LYS132 LYS133 GLU134 GLN136 ARG137 LEU139 HIS140 GLU141 LEU142 GLU143 ARG144 LEU145 GLN146 LYS147 TYR148 LEU149 SER150 GLY151 PHE152 ARG153 LEU154 LEU155 LYS156 ARG157 LEU158 PRO159 ASP160 ALA161 ILE162 PHE163 VAL164 VAL165 ASP166 PRO167 THR168 LYS169 GLU170 ALA171 ILE172 ALA173 VAL174 ARG175 GLU176 ALA177 ARG178 LYS179 LEU180 PHE181 ILE182 PRO183 VAL184 ILE185 ALA186 LEU187 ALA188 ASP189 THR190 ASP191 SER192 ASP193 PRO194 ASP195 LEU196 VAL197 ASP198 TYR199 ILE200 ILE201 PRO202 GLY203 ASN204 ASP205 ASP206 ALA207 ILE208 ARG209 SER210 ILE211 GLN212 LEU213 ILE214 LEU215 SER216 ARG217 ALA218 VAL219 ASP220 LEU221 ILE222 ILE223 GLN224 ALA225 ARG226 GLY227 GLY228 VAL229 VAL230 GLU231 PRO232 SER233 PRO234 SER235 TYR236 ALA237 LEU238 VAL239 GLN240
Unit 6 ALA2 ARG3 ARG4 ARG5 ARG6 ALA7 GLU8 VAL9 ARG10 GLN11 LEU12 GLN13 PRO14 ASP15 LEU16 VAL17 TYR18 GLY19 ASP20 VAL21 LEU22 VAL23 THR24 ALA25 PHE26 ILE27 ASN28 LYS29 ILE30 MET31 ARG32 ASP33 GLY34 LYS35 LYS36 ASN37 LEU38 ALA39 ALA40 ARG41 ILE42 PHE43 TYR44 ASP45 ALA46 CYS47 LYS48 ILE49 ILE50 GLN51 GLU52 LYS53 THR54 GLY55 GLN56 GLU57 PRO58 LEU59 LYS60 VAL61 PHE62 LYS63 GLN64 ALA65 VAL66 GLU67 ASN68 VAL69 LYS70 PRO71 ARG72 MET73 GLU74 VAL75 ARG76 SER77 ARG78 ARG79 VAL80 GLY81 GLY82 ALA83 ASN84 TYR85 GLN86 VAL87 PRO88 MET89 GLU90 VAL91 SER92 ARG94 ARG95 GLN96 GLN97 SER98 LEU99 ALA100 LEU101 ARG102 TRP103 LEU104 VAL105 GLN106 ALA107 ALA108 ASN109 GLN110 ARG111 PRO112 GLU113 ARG114 ARG115 ALA116 ALA117 VAL118 ARG119 ILE120 ALA121 HIS122 GLU123 LEU124 MET125 ASP126 ALA127 ALA128 GLU129 GLY130 LYS131 GLY132 GLY133 ALA134 VAL135 LYS136 LYS137 LYS138 GLU139 ASP140 VAL141 GLU142 ARG143 MET144 ALA145 GLU146 ALA147 ASN148 ARG149 ALA150 TYR151 ALA152 HIS153 TYR154 ARG155 TRP156
Unit 7 LYS11 ARG12 GLN13 VAL14 ALA15 SER16 GLY17 ARG18 ALA19 TYR20 ILE21 HIS22 ALA23 SER24 TYR25 ASN26 ASN27 THR28 ILE29 VAL30 THR31 ILE32 THR33 ASP34 PRO35 ASP36 GLY37 ASN38 PRO39 ILE40 THR41 TRP42 SER43 SER44 GLY45 GLY46 VAL47 ILE48 GLY49 TYR50 LYS51 GLY52 SER53 ARG54 LYS55 GLY56 THR57 PRO58 TYR59 ALA60 ALA61 GLN62 LEU63 ALA64 ALA65 LEU66 ASP67 ALA68 ALA69 LYS70 LYS71 ALA72 MET73 ALA74 TYR75 GLY76 MET77 GLN78 SER79 VAL80 ASP81 VAL82 ILE83 VAL84 ARG85 GLY86 THR87 GLY88 ALA89 GLY90 ARG91 GLU92 GLN93 ALA94 ILE95 ARG96 ALA97 LEU98 GLN99 ALA100 SER101 GLY102 LEU103 GLN104 VAL105 LYS106 SER107 ILE108 VAL109 ASP110 ASP111 THR112 PRO113 VAL114 PRO115 HIS116 ASN117 GLY118 CYS119 ARG120 PRO121 LYS122 LYS123 LYS124 PHE125 ARG126 LYS127 ALA128 SER129
Unit 8 PRO16 SER17 ARG18 LYS19 ALA20 LYS21 VAL22 LYS23 ALA24 THR25 LEU26 GLY27 GLU28 PHE29 ASP30 LEU31 ARG32 ASP33 TYR34 ARG35 ASN36 VAL37 GLU38 VAL39 LEU40 LYS41 ARG42 PHE43 LEU44 SER45 GLU46 THR47 GLY48 LYS49 ILE50 LEU51 PRO52 ARG53 ARG54 ARG55 THR56 GLY57 LEU58 SER59 GLY60 LYS61 GLU62 GLN63 ARG64 ILE65 LEU66 ALA67 LYS68 THR69 ILE70 LYS71 ARG72 ALA73 ARG74 ILE75 LEU76 GLY77 LEU78 LEU79 PRO80 PHE81 THR82 GLU83 LYS84 LEU85 VAL86 ARG87 LYS88
Unit 9 ASP4 LYS5 SER6 TYR7 CYS8 GLY9 PHE10 ILE11 ALA12 ILE13 VAL14 GLY15 ARG16 PRO17 ASN18 VAL19 GLY20 LYS21 SER22 THR23 LEU24 LEU25 ASN26 LYS27 LEU28 LEU29 GLY30 GLN31 LYS32 ILE33 SER34 ILE35 THR36 SER37 ARG38 LYS39 ALA40 GLN41 THR42 THR43 ARG44 HIS45 ARG46 ILE47 VAL48 GLY49 ILE50 HIS51 THR52 GLU53 GLY54 ALA55 TYR56 GLN57 ALA58 ILE59 TYR60 VAL61 ASP62 THR63 PRO64 GLY65 LEU66 HIS67 MET68 GLU69 GLU70 LYS71 ARG72 ALA73 ILE74 ASN75 ARG76 LEU77 MET78 ASN79 LYS80 ALA81 ALA82 SER83 SER84 SER85 ILE86 GLY87 ASP88 VAL89 GLU90 LEU91 VAL92 ILE93 PHE94 VAL95 VAL96 GLU97 GLY98 THR99 ARG100 TRP101 THR102 PRO103 ASP104 ASP105 GLU106 MET107 VAL108 LEU109 ASN110 LYS111 LEU112 ARG113 GLU114 GLY115 LYS116 ALA117 PRO118 VAL119 ILE120 LEU121 ALA122 VAL123 ASN124 LYS125 VAL126 ASP127 ASN128 VAL129 GLN130 GLU131 LYS132 ALA133 ASP134 LEU135 LEU136 PRO137 HIS138 LEU139 GLN140 PHE141 LEU142 ALA143 SER144 GLN145 MET146 ASN147 PHE148 LEU149 ASP150 ILE151 VAL152 PRO153 ILE154 SER155 ALA156 GLU157 THR158 GLY159 LEU160 ASN161 VAL162 ASP163 THR164 ILE165 ALA166 ALA167 ILE168 VAL169 ARG170 LYS171 HIS172 LEU173 PRO174 GLU175 ALA176 THR177 HIS178 HIS179 PHE180 PRO181 GLU182 ASP183 TYR184 ILE185 THR186 ASP187 ARG188 SER189 GLN190 ARG191 PHE192 MET193 ALA194 SER195 GLU196 ILE197 ILE198 ARG199 GLU200 LYS201 LEU202 MET203 ARG204 PHE205 LEU206 GLY207 ALA208 GLU209 LEU210 PRO211 TYR212 SER213 VAL214 THR215 VAL216 GLU217 ILE218 GLU219 ARG220 PHE221 VAL222 SER223 ASN224 GLU225 ARG226 GLY227 GLY228 TYR229 ASP230 ILE231 ASN232 GLY233 LEU234 ILE235 LEU236 VAL237 GLU238 ARG239 GLU240 GLY241 GLN242 LYS243 LYS244 MET245 VAL246 ILE247 GLY248 ASN249 LYS250 GLY251 ALA252 LYS253 ILE254 LYS255 THR256 ILE257 GLY258 ILE259 GLU260 ALA261 ARG262 LYS263 ASP264 MET265 GLN266 GLU267 MET268 PHE269 GLU270 ALA271 PRO272 VAL273 HIS274 LEU275 GLU276 LEU277 TRP278 VAL279 LYS280 VAL281 LYS282 SER283 GLY284 TRP285 ALA286 ASP287 ASP288 GLU289 ARG290 ALA291 LEU292 ARG293 SER294 LEU295

Nucleic acids
Unit 1 C720 G721 A722 U723 G724 G725 C726 G727 A728 A729 G730
Unit 2 C826 U827 A828 G829 G830 U831 C832 U833 C834 U835 G836 G837 G838 U839 C840 U841 C848 C849 U850 G851 G852 G853 G854 G855 C856 C857 G858 A859 A860 G861 C862
Unit 3 U380 U381 C382 C383 C384 G385 G386 G387 C388 C389 U390 G926 G927 G928 G929 C930 C931 C932 G933 C934
Unit 4 U83 G84 U85 U86 G87 G88 G89 U90 U91 A92 A93 G94 U95 C96 C97 C98 G99 C100 A101 A102 C103 G104 A105 G106

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany