1WY2 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE PROLIDASE FROM PYROCOCCUS HORIKOSHI
• Keywords: STRUCTURAL GENOMICS, PROLIDASE, RIKEN STRUCTURAL GENOMICS/PR INITIATIVE, RSGI, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1WY2	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	XAA-PRO DIPEPTIDASE	A	351	2769	0
2	Protein	XAA-PRO DIPEPTIDASE	B	347	2737	0
3	Ligand	XAA-PRO DIPEPTIDASE	A	6	0	20
4	Ligand	XAA-PRO DIPEPTIDASE	B	3	0	7
5	Water			682	0	682
total				1389	5506	709

Proteins

Unit 1

MET 1 ASP 2 ILE 3 MET 4 ASN 5 GLU 6 LYS 7 VAL 8 LYS 9 LYS 10 ILE 11 ILE 12 GLU 13 PHE 14 MET 15 ASP 16 LYS 17 ASN 18 SER 19 ILE 20 ASP 21 ALA 22 VAL 23 LEU 24 ILE 25 ALA 26 LYS 27 ASN 28 PRO 29 ASN 30 VAL 31 TYR 32 TYR 33 ILE 34 SER 35 GLY 36 ALA 37 SER 38 PRO 39 LEU 40 ALA 41 GLY 42 GLY 43 TYR 44 ILE 45 LEU 46 ILE 47 THR 48 GLY 49 GLU 50 SER 51 ALA 52 THR 53 LEU 54 TYR 55 VAL 56 PRO 57 GLU 58 LEU 59 GLU 60 TYR 61 GLU 62 MET 63 ALA 64 LYS 65 GLU 66 GLU 67 SER 68 ASN 69 ILE 70 PRO 71 VAL 72 GLU 73 LYS 74 PHE 75 LYS 76 LYS 77 MET 78 ASP 79 GLU 80 PHE 81 TYR 82 LYS 83 ALA 84 LEU 85 GLU 86 GLY 87 ILE 88 LYS 89 SER 90 LEU 91 GLY 92 ILE 93 GLU 94 SER 95 SER 96 LEU 97 PRO 98 TYR 99 GLY 100 PHE 101 ILE 102 GLU 103 GLU 104 LEU 105 LYS 106 LYS 107 LYS 108 ALA 109 ASN 110 ILE 111 LYS 112 GLU 113 PHE 114 LYS 115 LYS 116 VAL 117 ASP 118 ASP 119 VAL 120 ILE 121 ARG 122 ASP 123 MET 124 ARG 125 ILE 126 ILE 127 LYS 128 SER 129 GLU 130 LYS 131 GLU 132 ILE 133 LYS 134 ILE 135 ILE 136 GLU 137 LYS 138 ALA 139 CYS 140 GLU 141 ILE 142 ALA 143 ASP 144 LYS 145 ALA 146 VAL 147 MET 148 ALA 149 ALA 150 ILE 151 GLU 152 GLU 153 ILE 154 THR 155 GLU 156 GLY 157 LYS 158 LYS 159 GLU 160 ARG 161 GLU 162 VAL 163 ALA 164 ALA 165 LYS 166 VAL 167 GLU 168 TYR 169 LEU 170 MET 171 LYS 172 MET 173 ASN 174 GLY 175 ALA 176 GLU 177 LYS 178 PRO 179 ALA 180 PHE 181 ASP 182 THR 183 ILE 184 ILE 185 ALA 186 SER 187 GLY 188 TYR 189 ARG 190 SER 191 ALA 192 LEU 193 PRO 194 HIS 195 GLY 196 VAL 197 ALA 198 SER 199 ASP 200 LYS 201 ARG 202 ILE 203 GLU 204 ARG 205 GLY 206 ASP 207 LEU 208 VAL 209 VAL 210 ILE 211 ASP 212 LEU 213 GLY 214 ALA 215 LEU 216 TYR 217 GLN 218 HIS 219 TYR 220 ASN 221 SER 222 ASP 223 ILE 224 THR 225 ARG 226 THR 227 ILE 228 VAL 229 VAL 230 GLY 231 SER 232 PRO 233 ASN 234 GLU 235 LYS 236 GLN 237 LYS 238 GLU 239 ILE 240 TYR 241 GLU 242 ILE 243 VAL 244 LEU 245 GLU 246 ALA 247 GLN 248 LYS 249 LYS 250 ALA 251 VAL 252 GLU 253 SER 254 ALA 255 LYS 256 PRO 257 GLY 258 ILE 259 THR 260 ALA 261 LYS 262 GLU 263 LEU 264 ASP 265 SER 266 ILE 267 ALA 268 ARG 269 ASN 270 ILE 271 ILE 272 ALA 273 GLU 274 TYR 275 GLY 276 TYR 277 GLY 278 GLU 279 TYR 280 PHE 281 ASN 282 HIS 283 SER 284 LEU 285 GLY 286 HIS 287 GLY 288 VAL 289 GLY 290 LEU 291 GLU 292 VAL 293 HIS 294 GLU 295 TRP 296 PRO 297 ARG 298 VAL 299 SER 300 GLN 301 TYR 302 ASP 303 GLU 304 THR 305 VAL 306 LEU 307 ARG 308 GLU 309 GLY 310 MET 311 VAL 312 ILE 313 THR 314 ILE 315 GLU 316 PRO 317 GLY 318 ILE 319 TYR 320 ILE 321 PRO 322 LYS 323 ILE 324 GLY 325 GLY 326 VAL 327 ARG 328 ILE 329 GLU 330 ASP 331 THR 332 ILE 333 LEU 334 ILE 335 THR 336 LYS 337 ASN 338 GLY 339 SER 340 LYS 341 ARG 342 LEU 343 THR 344 LYS 345 THR 346 GLU 347 ARG 348 GLU 349 LEU 350 ILE 351

Unit 2

ASN 5 GLU 6 LYS 7 VAL 8 LYS 9 LYS 10 ILE 11 ILE 12 GLU 13 PHE 14 MET 15 ASP 16 LYS 17 ASN 18 SER 19 ILE 20 ASP 21 ALA 22 VAL 23 LEU 24 ILE 25 ALA 26 LYS 27 ASN 28 PRO 29 ASN 30 VAL 31 TYR 32 TYR 33 ILE 34 SER 35 GLY 36 ALA 37 SER 38 PRO 39 LEU 40 ALA 41 GLY 42 GLY 43 TYR 44 ILE 45 LEU 46 ILE 47 THR 48 GLY 49 GLU 50 SER 51 ALA 52 THR 53 LEU 54 TYR 55 VAL 56 PRO 57 GLU 58 LEU 59 GLU 60 TYR 61 GLU 62 MET 63 ALA 64 LYS 65 GLU 66 GLU 67 SER 68 ASN 69 ILE 70 PRO 71 VAL 72 GLU 73 LYS 74 PHE 75 LYS 76 LYS 77 MET 78 ASP 79 GLU 80 PHE 81 TYR 82 LYS 83 ALA 84 LEU 85 GLU 86 GLY 87 ILE 88 LYS 89 SER 90 LEU 91 GLY 92 ILE 93 GLU 94 SER 95 SER 96 LEU 97 PRO 98 TYR 99 GLY 100 PHE 101 ILE 102 GLU 103 GLU 104 LEU 105 LYS 106 LYS 107 LYS 108 ALA 109 ASN 110 ILE 111 LYS 112 GLU 113 PHE 114 LYS 115 LYS 116 VAL 117 ASP 118 ASP 119 VAL 120 ILE 121 ARG 122 ASP 123 MET 124 ARG 125 ILE 126 ILE 127 LYS 128 SER 129 GLU 130 LYS 131 GLU 132 ILE 133 LYS 134 ILE 135 ILE 136 GLU 137 LYS 138 ALA 139 CYS 140 GLU 141 ILE 142 ALA 143 ASP 144 LYS 145 ALA 146 VAL 147 MET 148 ALA 149 ALA 150 ILE 151 GLU 152 GLU 153 ILE 154 THR 155 GLU 156 GLY 157 LYS 158 LYS 159 GLU 160 ARG 161 GLU 162 VAL 163 ALA 164 ALA 165 LYS 166 VAL 167 GLU 168 TYR 169 LEU 170 MET 171 LYS 172 MET 173 ASN 174 GLY 175 ALA 176 GLU 177 LYS 178 PRO 179 ALA 180 PHE 181 ASP 182 THR 183 ILE 184 ILE 185 ALA 186 SER 187 GLY 188 TYR 189 ARG 190 SER 191 ALA 192 LEU 193 PRO 194 HIS 195 GLY 196 VAL 197 ALA 198 SER 199 ASP 200 LYS 201 ARG 202 ILE 203 GLU 204 ARG 205 GLY 206 ASP 207 LEU 208 VAL 209 VAL 210 ILE 211 ASP 212 LEU 213 GLY 214 ALA 215 LEU 216 TYR 217 GLN 218 HIS 219 TYR 220 ASN 221 SER 222 ASP 223 ILE 224 THR 225 ARG 226 THR 227 ILE 228 VAL 229 VAL 230 GLY 231 SER 232 PRO 233 ASN 234 GLU 235 LYS 236 GLN 237 LYS 238 GLU 239 ILE 240 TYR 241 GLU 242 ILE 243 VAL 244 LEU 245 GLU 246 ALA 247 GLN 248 LYS 249 LYS 250 ALA 251 VAL 252 GLU 253 SER 254 ALA 255 LYS 256 PRO 257 GLY 258 ILE 259 THR 260 ALA 261 LYS 262 GLU 263 LEU 264 ASP 265 SER 266 ILE 267 ALA 268 ARG 269 ASN 270 ILE 271 ILE 272 ALA 273 GLU 274 TYR 275 GLY 276 TYR 277 GLY 278 GLU 279 TYR 280 PHE 281 ASN 282 HIS 283 SER 284 LEU 285 GLY 286 HIS 287 GLY 288 VAL 289 GLY 290 LEU 291 GLU 292 VAL 293 HIS 294 GLU 295 TRP 296 PRO 297 ARG 298 VAL 299 SER 300 GLN 301 TYR 302 ASP 303 GLU 304 THR 305 VAL 306 LEU 307 ARG 308 GLU 309 GLY 310 MET 311 VAL 312 ILE 313 THR 314 ILE 315 GLU 316 PRO 317 GLY 318 ILE 319 TYR 320 ILE 321 PRO 322 LYS 323 ILE 324 GLY 325 GLY 326 VAL 327 ARG 328 ILE 329 GLU 330 ASP 331 THR 332 ILE 333 LEU 334 ILE 335 THR 336 LYS 337 ASN 338 GLY 339 SER 340 LYS 341 ARG 342 LEU 343 THR 344 LYS 345 THR 346 GLU 347 ARG 348 GLU 349 LEU 350 ILE 351

Ligands

Unit 3	CAC 403 ZN 405 ZN 406 GOL 1401 GOL 1402 MG 1409
Unit 4	CAC 404 ZN 407 ZN 408