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Sequence, Chains, Asymmetric and Biological Units

Title HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D SINGLE MUTANT M29F IN COMPLEX WITH DNA GCGA(UBR)CGC
Keywords COMPLEX CHROMATIN PROTEIN/DNA, MINOR-GROOVE DNA BINDING, ARCHEA, KINKED-DNA, INTERCALATION, SAC7D MUTANT, DNA BINDING PROTEIN/DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1WTP     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA    C 8 141 20
2  DNA    D 8 141 20
3  DNA    E 8 141 20
4  DNA    F 8 141 20
5  Protein   DNA-BINDING PROTEINS 7A/7B/7D  A 63 509 0
6  Protein   DNA-BINDING PROTEINS 7A/7B/7D  B 64 518 0
7 Water     156 0 156
total       315 1591 236

Proteins
Unit 5 VAL2 LYS3 VAL4 LYS5 PHE6 LYS7 TYR8 LYS9 GLY10 GLU11 GLU12 LYS13 GLU14 VAL15 ASP16 THR17 SER18 LYS19 ILE20 LYS21 LYS22 VAL23 TRP24 ARG25 VAL26 GLY27 LYS28 PHE29 VAL30 SER31 PHE32 THR33 TYR34 ASP35 ASP36 ASN37 GLY38 LYS39 THR40 GLY41 ARG42 GLY43 ALA44 VAL45 SER46 GLU47 LYS48 ASP49 ALA50 PRO51 LYS52 GLU53 LEU54 LEU55 ASP56 MET57 LEU58 ALA59 ARG60 ALA61 GLU62 ARG63 GLU64
Unit 6 VAL2 LYS3 VAL4 LYS5 PHE6 LYS7 TYR8 LYS9 GLY10 GLU11 GLU12 LYS13 GLU14 VAL15 ASP16 THR17 SER18 LYS19 ILE20 LYS21 LYS22 VAL23 TRP24 ARG25 VAL26 GLY27 LYS28 PHE29 VAL30 SER31 PHE32 THR33 TYR34 ASP35 ASP36 ASN37 GLY38 LYS39 THR40 GLY41 ARG42 GLY43 ALA44 VAL45 SER46 GLU47 LYS48 ASP49 ALA50 PRO51 LYS52 GLU53 LEU54 LEU55 ASP56 MET57 LEU58 ALA59 ARG60 ALA61 GLU62 ARG63 GLU64 LYS65

Nucleic acids
Unit 1 DG101 DC102 DG103 DA104 BRU105 DC106 DG107 DC108
Unit 2 DG109 DC110 DG111 DA112 BRU113 DC114 DG115 DC116
Unit 3 DG101 DC102 DG103 DA104 BRU105 DC106 DG107 DC108
Unit 4 DG109 DC110 DG111 DA112 BRU113 DC114 DG115 DC116

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany