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Sequence, Chains, Asymmetric and Biological Units

Title ESCHERICHIA COLI YDCW GENE PRODUCT IS A MEDIUM-CHAIN ALDEHYD DEHYDROGENASE AS DETERMINED BY KINETICS AND CRYSTAL STRUCTU
Keywords ALDEHYDE DEHYDROGENASE, NADH, FLUORESCENCE, KINETICS, OXIDOR
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1WND     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PUTATIVE BETAINE ALDEHYDE DEHYDROGENASE  A 474 3575 0
2  Protein   PUTATIVE BETAINE ALDEHYDE DEHYDROGENASE  B 474 3575 0
3  Protein   PUTATIVE BETAINE ALDEHYDE DEHYDROGENASE  C 474 3575 0
4  Protein   PUTATIVE BETAINE ALDEHYDE DEHYDROGENASE  D 474 3575 0
5  Ligand   PUTATIVE BETAINE ALDEHYDE DEHYDROGENASE  A 1 0 1
6  Ligand   PUTATIVE BETAINE ALDEHYDE DEHYDROGENASE  B 1 0 1
7  Ligand   PUTATIVE BETAINE ALDEHYDE DEHYDROGENASE  C 1 0 1
8  Ligand   PUTATIVE BETAINE ALDEHYDE DEHYDROGENASE  D 1 0 1
9 Water     270 0 270
total       2170 14300 274

Proteins
Unit 1 MET1 GLN2 HIS3 LYS4 LEU5 LEU6 ILE7 ASN8 GLY9 GLU10 LEU11 VAL12 SER13 GLY14 GLU15 GLY16 GLU17 LYS18 GLN19 PRO20 VAL21 TYR22 ASN23 PRO24 ALA25 THR26 GLY27 ASP28 VAL29 LEU30 LEU31 GLU32 ILE33 ALA34 GLU35 ALA36 SER37 ALA38 GLU39 GLN40 VAL41 ASP42 ALA43 ALA44 VAL45 ARG46 ALA47 ALA48 ASP49 ALA50 ALA51 PHE52 ALA53 GLU54 TRP55 GLY56 GLN57 THR58 THR59 PRO60 LYS61 VAL62 ARG63 ALA64 GLU65 CYS66 LEU67 LEU68 LYS69 LEU70 ALA71 ASP72 VAL73 ILE74 GLU75 GLU76 ASN77 GLY78 GLN79 VAL80 PHE81 ALA82 GLU83 LEU84 GLU85 SER86 ARG87 ASN88 CYS89 GLY90 LYS91 PRO92 LEU93 HIS94 SER95 ALA96 PHE97 ASN98 ASP99 GLU100 ILE101 PRO102 ALA103 ILE104 VAL105 ASP106 VAL107 PHE108 ARG109 PHE110 PHE111 ALA112 GLY113 ALA114 ALA115 ARG116 CYS117 LEU118 ASN119 GLY120 LEU121 ALA122 ALA123 GLY124 GLU125 TYR126 LEU127 GLU128 GLY129 HIS130 THR131 SER132 MET133 ILE134 ARG135 ARG136 ASP137 PRO138 LEU139 GLY140 VAL141 VAL142 ALA143 SER144 ILE145 ALA146 PRO147 TRP148 ASN149 TYR150 PRO151 LEU152 MET153 MET154 ALA155 ALA156 TRP157 LYS158 LEU159 ALA160 PRO161 ALA162 LEU163 ALA164 ALA165 GLY166 ASN167 CYS168 VAL169 VAL170 LEU171 LYS172 PRO173 SER174 GLU175 ILE176 THR177 PRO178 LEU179 THR180 ALA181 LEU182 LYS183 LEU184 ALA185 GLU186 LEU187 ALA188 LYS189 ASP190 ILE191 PHE192 PRO193 ALA194 GLY195 VAL196 VAL197 ASN198 ILE199 LEU200 PHE201 GLY202 ARG203 GLY204 LYS205 THR206 VAL207 GLY208 ASP209 PRO210 LEU211 THR212 GLY213 HIS214 PRO215 LYS216 VAL217 ARG218 MET219 VAL220 SER221 LEU222 THR223 GLY224 SER225 ILE226 ALA227 THR228 GLY229 GLU230 HIS231 ILE232 ILE233 SER234 HIS235 THR236 ALA237 SER238 SER239 ILE240 LYS241 ARG242 THR243 HIS244 MET245 GLU246 LEU247 GLY248 GLY249 LYS250 ALA251 PRO252 VAL253 ILE254 VAL255 PHE256 ASP257 ASP258 ALA259 ASP260 ILE261 GLU262 ALA263 VAL264 VAL265 GLU266 GLY267 VAL268 ARG269 THR270 PHE271 GLY272 TYR273 TYR274 ASN275 ALA276 GLY277 GLN278 ASP279 CYS280 THR281 ALA282 ALA283 CYS284 ARG285 ILE286 TYR287 ALA288 GLN289 LYS290 GLY291 ILE292 TYR293 ASP294 THR295 LEU296 VAL297 GLU298 LYS299 LEU300 GLY301 ALA302 ALA303 VAL304 ALA305 THR306 LEU307 LYS308 SER309 GLY310 ALA311 PRO312 ASP313 ASP314 GLU315 SER316 THR317 GLU318 LEU319 GLY320 PRO321 LEU322 SER323 SER324 LEU325 ALA326 HIS327 LEU328 GLU329 ARG330 VAL331 GLY332 LYS333 ALA334 VAL335 GLU336 GLU337 ALA338 LYS339 ALA340 THR341 GLY342 HIS343 ILE344 LYS345 VAL346 ILE347 THR348 GLY349 GLY350 GLU351 LYS352 ARG353 LYS354 GLY355 ASN356 GLY357 TYR358 TYR359 TYR360 ALA361 PRO362 THR363 LEU364 LEU365 ALA366 GLY367 ALA368 LEU369 GLN370 ASP371 ASP372 ALA373 ILE374 VAL375 GLN376 LYS377 GLU378 VAL379 PHE380 GLY381 PRO382 VAL383 VAL384 SER385 VAL386 THR387 PRO388 PHE389 ASP390 ASN391 GLU392 GLU393 GLN394 VAL395 VAL396 ASN397 TRP398 ALA399 ASN400 ASP401 SER402 GLN403 TYR404 GLY405 LEU406 ALA407 SER408 SER409 VAL410 TRP411 THR412 LYS413 ASP414 VAL415 GLY416 ARG417 ALA418 HIS419 ARG420 VAL421 SER422 ALA423 ARG424 LEU425 GLN426 TYR427 GLY428 CYS429 THR430 TRP431 VAL432 ASN433 THR434 HIS435 PHE436 MET437 LEU438 VAL439 SER440 GLU441 MET442 PRO443 HIS444 GLY445 GLY446 GLN447 LYS448 LEU449 SER450 GLY451 TYR452 GLY453 LYS454 ASP455 MET456 SER457 LEU458 TYR459 GLY460 LEU461 GLU462 ASP463 TYR464 THR465 VAL466 VAL467 ARG468 HIS469 VAL470 MET471 VAL472 LYS473 HIS474
Unit 2 MET1 GLN2 HIS3 LYS4 LEU5 LEU6 ILE7 ASN8 GLY9 GLU10 LEU11 VAL12 SER13 GLY14 GLU15 GLY16 GLU17 LYS18 GLN19 PRO20 VAL21 TYR22 ASN23 PRO24 ALA25 THR26 GLY27 ASP28 VAL29 LEU30 LEU31 GLU32 ILE33 ALA34 GLU35 ALA36 SER37 ALA38 GLU39 GLN40 VAL41 ASP42 ALA43 ALA44 VAL45 ARG46 ALA47 ALA48 ASP49 ALA50 ALA51 PHE52 ALA53 GLU54 TRP55 GLY56 GLN57 THR58 THR59 PRO60 LYS61 VAL62 ARG63 ALA64 GLU65 CYS66 LEU67 LEU68 LYS69 LEU70 ALA71 ASP72 VAL73 ILE74 GLU75 GLU76 ASN77 GLY78 GLN79 VAL80 PHE81 ALA82 GLU83 LEU84 GLU85 SER86 ARG87 ASN88 CYS89 GLY90 LYS91 PRO92 LEU93 HIS94 SER95 ALA96 PHE97 ASN98 ASP99 GLU100 ILE101 PRO102 ALA103 ILE104 VAL105 ASP106 VAL107 PHE108 ARG109 PHE110 PHE111 ALA112 GLY113 ALA114 ALA115 ARG116 CYS117 LEU118 ASN119 GLY120 LEU121 ALA122 ALA123 GLY124 GLU125 TYR126 LEU127 GLU128 GLY129 HIS130 THR131 SER132 MET133 ILE134 ARG135 ARG136 ASP137 PRO138 LEU139 GLY140 VAL141 VAL142 ALA143 SER144 ILE145 ALA146 PRO147 TRP148 ASN149 TYR150 PRO151 LEU152 MET153 MET154 ALA155 ALA156 TRP157 LYS158 LEU159 ALA160 PRO161 ALA162 LEU163 ALA164 ALA165 GLY166 ASN167 CYS168 VAL169 VAL170 LEU171 LYS172 PRO173 SER174 GLU175 ILE176 THR177 PRO178 LEU179 THR180 ALA181 LEU182 LYS183 LEU184 ALA185 GLU186 LEU187 ALA188 LYS189 ASP190 ILE191 PHE192 PRO193 ALA194 GLY195 VAL196 VAL197 ASN198 ILE199 LEU200 PHE201 GLY202 ARG203 GLY204 LYS205 THR206 VAL207 GLY208 ASP209 PRO210 LEU211 THR212 GLY213 HIS214 PRO215 LYS216 VAL217 ARG218 MET219 VAL220 SER221 LEU222 THR223 GLY224 SER225 ILE226 ALA227 THR228 GLY229 GLU230 HIS231 ILE232 ILE233 SER234 HIS235 THR236 ALA237 SER238 SER239 ILE240 LYS241 ARG242 THR243 HIS244 MET245 GLU246 LEU247 GLY248 GLY249 LYS250 ALA251 PRO252 VAL253 ILE254 VAL255 PHE256 ASP257 ASP258 ALA259 ASP260 ILE261 GLU262 ALA263 VAL264 VAL265 GLU266 GLY267 VAL268 ARG269 THR270 PHE271 GLY272 TYR273 TYR274 ASN275 ALA276 GLY277 GLN278 ASP279 CYS280 THR281 ALA282 ALA283 CYS284 ARG285 ILE286 TYR287 ALA288 GLN289 LYS290 GLY291 ILE292 TYR293 ASP294 THR295 LEU296 VAL297 GLU298 LYS299 LEU300 GLY301 ALA302 ALA303 VAL304 ALA305 THR306 LEU307 LYS308 SER309 GLY310 ALA311 PRO312 ASP313 ASP314 GLU315 SER316 THR317 GLU318 LEU319 GLY320 PRO321 LEU322 SER323 SER324 LEU325 ALA326 HIS327 LEU328 GLU329 ARG330 VAL331 GLY332 LYS333 ALA334 VAL335 GLU336 GLU337 ALA338 LYS339 ALA340 THR341 GLY342 HIS343 ILE344 LYS345 VAL346 ILE347 THR348 GLY349 GLY350 GLU351 LYS352 ARG353 LYS354 GLY355 ASN356 GLY357 TYR358 TYR359 TYR360 ALA361 PRO362 THR363 LEU364 LEU365 ALA366 GLY367 ALA368 LEU369 GLN370 ASP371 ASP372 ALA373 ILE374 VAL375 GLN376 LYS377 GLU378 VAL379 PHE380 GLY381 PRO382 VAL383 VAL384 SER385 VAL386 THR387 PRO388 PHE389 ASP390 ASN391 GLU392 GLU393 GLN394 VAL395 VAL396 ASN397 TRP398 ALA399 ASN400 ASP401 SER402 GLN403 TYR404 GLY405 LEU406 ALA407 SER408 SER409 VAL410 TRP411 THR412 LYS413 ASP414 VAL415 GLY416 ARG417 ALA418 HIS419 ARG420 VAL421 SER422 ALA423 ARG424 LEU425 GLN426 TYR427 GLY428 CYS429 THR430 TRP431 VAL432 ASN433 THR434 HIS435 PHE436 MET437 LEU438 VAL439 SER440 GLU441 MET442 PRO443 HIS444 GLY445 GLY446 GLN447 LYS448 LEU449 SER450 GLY451 TYR452 GLY453 LYS454 ASP455 MET456 SER457 LEU458 TYR459 GLY460 LEU461 GLU462 ASP463 TYR464 THR465 VAL466 VAL467 ARG468 HIS469 VAL470 MET471 VAL472 LYS473 HIS474
Unit 3 MET1 GLN2 HIS3 LYS4 LEU5 LEU6 ILE7 ASN8 GLY9 GLU10 LEU11 VAL12 SER13 GLY14 GLU15 GLY16 GLU17 LYS18 GLN19 PRO20 VAL21 TYR22 ASN23 PRO24 ALA25 THR26 GLY27 ASP28 VAL29 LEU30 LEU31 GLU32 ILE33 ALA34 GLU35 ALA36 SER37 ALA38 GLU39 GLN40 VAL41 ASP42 ALA43 ALA44 VAL45 ARG46 ALA47 ALA48 ASP49 ALA50 ALA51 PHE52 ALA53 GLU54 TRP55 GLY56 GLN57 THR58 THR59 PRO60 LYS61 VAL62 ARG63 ALA64 GLU65 CYS66 LEU67 LEU68 LYS69 LEU70 ALA71 ASP72 VAL73 ILE74 GLU75 GLU76 ASN77 GLY78 GLN79 VAL80 PHE81 ALA82 GLU83 LEU84 GLU85 SER86 ARG87 ASN88 CYS89 GLY90 LYS91 PRO92 LEU93 HIS94 SER95 ALA96 PHE97 ASN98 ASP99 GLU100 ILE101 PRO102 ALA103 ILE104 VAL105 ASP106 VAL107 PHE108 ARG109 PHE110 PHE111 ALA112 GLY113 ALA114 ALA115 ARG116 CYS117 LEU118 ASN119 GLY120 LEU121 ALA122 ALA123 GLY124 GLU125 TYR126 LEU127 GLU128 GLY129 HIS130 THR131 SER132 MET133 ILE134 ARG135 ARG136 ASP137 PRO138 LEU139 GLY140 VAL141 VAL142 ALA143 SER144 ILE145 ALA146 PRO147 TRP148 ASN149 TYR150 PRO151 LEU152 MET153 MET154 ALA155 ALA156 TRP157 LYS158 LEU159 ALA160 PRO161 ALA162 LEU163 ALA164 ALA165 GLY166 ASN167 CYS168 VAL169 VAL170 LEU171 LYS172 PRO173 SER174 GLU175 ILE176 THR177 PRO178 LEU179 THR180 ALA181 LEU182 LYS183 LEU184 ALA185 GLU186 LEU187 ALA188 LYS189 ASP190 ILE191 PHE192 PRO193 ALA194 GLY195 VAL196 VAL197 ASN198 ILE199 LEU200 PHE201 GLY202 ARG203 GLY204 LYS205 THR206 VAL207 GLY208 ASP209 PRO210 LEU211 THR212 GLY213 HIS214 PRO215 LYS216 VAL217 ARG218 MET219 VAL220 SER221 LEU222 THR223 GLY224 SER225 ILE226 ALA227 THR228 GLY229 GLU230 HIS231 ILE232 ILE233 SER234 HIS235 THR236 ALA237 SER238 SER239 ILE240 LYS241 ARG242 THR243 HIS244 MET245 GLU246 LEU247 GLY248 GLY249 LYS250 ALA251 PRO252 VAL253 ILE254 VAL255 PHE256 ASP257 ASP258 ALA259 ASP260 ILE261 GLU262 ALA263 VAL264 VAL265 GLU266 GLY267 VAL268 ARG269 THR270 PHE271 GLY272 TYR273 TYR274 ASN275 ALA276 GLY277 GLN278 ASP279 CYS280 THR281 ALA282 ALA283 CYS284 ARG285 ILE286 TYR287 ALA288 GLN289 LYS290 GLY291 ILE292 TYR293 ASP294 THR295 LEU296 VAL297 GLU298 LYS299 LEU300 GLY301 ALA302 ALA303 VAL304 ALA305 THR306 LEU307 LYS308 SER309 GLY310 ALA311 PRO312 ASP313 ASP314 GLU315 SER316 THR317 GLU318 LEU319 GLY320 PRO321 LEU322 SER323 SER324 LEU325 ALA326 HIS327 LEU328 GLU329 ARG330 VAL331 GLY332 LYS333 ALA334 VAL335 GLU336 GLU337 ALA338 LYS339 ALA340 THR341 GLY342 HIS343 ILE344 LYS345 VAL346 ILE347 THR348 GLY349 GLY350 GLU351 LYS352 ARG353 LYS354 GLY355 ASN356 GLY357 TYR358 TYR359 TYR360 ALA361 PRO362 THR363 LEU364 LEU365 ALA366 GLY367 ALA368 LEU369 GLN370 ASP371 ASP372 ALA373 ILE374 VAL375 GLN376 LYS377 GLU378 VAL379 PHE380 GLY381 PRO382 VAL383 VAL384 SER385 VAL386 THR387 PRO388 PHE389 ASP390 ASN391 GLU392 GLU393 GLN394 VAL395 VAL396 ASN397 TRP398 ALA399 ASN400 ASP401 SER402 GLN403 TYR404 GLY405 LEU406 ALA407 SER408 SER409 VAL410 TRP411 THR412 LYS413 ASP414 VAL415 GLY416 ARG417 ALA418 HIS419 ARG420 VAL421 SER422 ALA423 ARG424 LEU425 GLN426 TYR427 GLY428 CYS429 THR430 TRP431 VAL432 ASN433 THR434 HIS435 PHE436 MET437 LEU438 VAL439 SER440 GLU441 MET442 PRO443 HIS444 GLY445 GLY446 GLN447 LYS448 LEU449 SER450 GLY451 TYR452 GLY453 LYS454 ASP455 MET456 SER457 LEU458 TYR459 GLY460 LEU461 GLU462 ASP463 TYR464 THR465 VAL466 VAL467 ARG468 HIS469 VAL470 MET471 VAL472 LYS473 HIS474
Unit 4 MET1 GLN2 HIS3 LYS4 LEU5 LEU6 ILE7 ASN8 GLY9 GLU10 LEU11 VAL12 SER13 GLY14 GLU15 GLY16 GLU17 LYS18 GLN19 PRO20 VAL21 TYR22 ASN23 PRO24 ALA25 THR26 GLY27 ASP28 VAL29 LEU30 LEU31 GLU32 ILE33 ALA34 GLU35 ALA36 SER37 ALA38 GLU39 GLN40 VAL41 ASP42 ALA43 ALA44 VAL45 ARG46 ALA47 ALA48 ASP49 ALA50 ALA51 PHE52 ALA53 GLU54 TRP55 GLY56 GLN57 THR58 THR59 PRO60 LYS61 VAL62 ARG63 ALA64 GLU65 CYS66 LEU67 LEU68 LYS69 LEU70 ALA71 ASP72 VAL73 ILE74 GLU75 GLU76 ASN77 GLY78 GLN79 VAL80 PHE81 ALA82 GLU83 LEU84 GLU85 SER86 ARG87 ASN88 CYS89 GLY90 LYS91 PRO92 LEU93 HIS94 SER95 ALA96 PHE97 ASN98 ASP99 GLU100 ILE101 PRO102 ALA103 ILE104 VAL105 ASP106 VAL107 PHE108 ARG109 PHE110 PHE111 ALA112 GLY113 ALA114 ALA115 ARG116 CYS117 LEU118 ASN119 GLY120 LEU121 ALA122 ALA123 GLY124 GLU125 TYR126 LEU127 GLU128 GLY129 HIS130 THR131 SER132 MET133 ILE134 ARG135 ARG136 ASP137 PRO138 LEU139 GLY140 VAL141 VAL142 ALA143 SER144 ILE145 ALA146 PRO147 TRP148 ASN149 TYR150 PRO151 LEU152 MET153 MET154 ALA155 ALA156 TRP157 LYS158 LEU159 ALA160 PRO161 ALA162 LEU163 ALA164 ALA165 GLY166 ASN167 CYS168 VAL169 VAL170 LEU171 LYS172 PRO173 SER174 GLU175 ILE176 THR177 PRO178 LEU179 THR180 ALA181 LEU182 LYS183 LEU184 ALA185 GLU186 LEU187 ALA188 LYS189 ASP190 ILE191 PHE192 PRO193 ALA194 GLY195 VAL196 VAL197 ASN198 ILE199 LEU200 PHE201 GLY202 ARG203 GLY204 LYS205 THR206 VAL207 GLY208 ASP209 PRO210 LEU211 THR212 GLY213 HIS214 PRO215 LYS216 VAL217 ARG218 MET219 VAL220 SER221 LEU222 THR223 GLY224 SER225 ILE226 ALA227 THR228 GLY229 GLU230 HIS231 ILE232 ILE233 SER234 HIS235 THR236 ALA237 SER238 SER239 ILE240 LYS241 ARG242 THR243 HIS244 MET245 GLU246 LEU247 GLY248 GLY249 LYS250 ALA251 PRO252 VAL253 ILE254 VAL255 PHE256 ASP257 ASP258 ALA259 ASP260 ILE261 GLU262 ALA263 VAL264 VAL265 GLU266 GLY267 VAL268 ARG269 THR270 PHE271 GLY272 TYR273 TYR274 ASN275 ALA276 GLY277 GLN278 ASP279 CYS280 THR281 ALA282 ALA283 CYS284 ARG285 ILE286 TYR287 ALA288 GLN289 LYS290 GLY291 ILE292 TYR293 ASP294 THR295 LEU296 VAL297 GLU298 LYS299 LEU300 GLY301 ALA302 ALA303 VAL304 ALA305 THR306 LEU307 LYS308 SER309 GLY310 ALA311 PRO312 ASP313 ASP314 GLU315 SER316 THR317 GLU318 LEU319 GLY320 PRO321 LEU322 SER323 SER324 LEU325 ALA326 HIS327 LEU328 GLU329 ARG330 VAL331 GLY332 LYS333 ALA334 VAL335 GLU336 GLU337 ALA338 LYS339 ALA340 THR341 GLY342 HIS343 ILE344 LYS345 VAL346 ILE347 THR348 GLY349 GLY350 GLU351 LYS352 ARG353 LYS354 GLY355 ASN356 GLY357 TYR358 TYR359 TYR360 ALA361 PRO362 THR363 LEU364 LEU365 ALA366 GLY367 ALA368 LEU369 GLN370 ASP371 ASP372 ALA373 ILE374 VAL375 GLN376 LYS377 GLU378 VAL379 PHE380 GLY381 PRO382 VAL383 VAL384 SER385 VAL386 THR387 PRO388 PHE389 ASP390 ASN391 GLU392 GLU393 GLN394 VAL395 VAL396 ASN397 TRP398 ALA399 ASN400 ASP401 SER402 GLN403 TYR404 GLY405 LEU406 ALA407 SER408 SER409 VAL410 TRP411 THR412 LYS413 ASP414 VAL415 GLY416 ARG417 ALA418 HIS419 ARG420 VAL421 SER422 ALA423 ARG424 LEU425 GLN426 TYR427 GLY428 CYS429 THR430 TRP431 VAL432 ASN433 THR434 HIS435 PHE436 MET437 LEU438 VAL439 SER440 GLU441 MET442 PRO443 HIS444 GLY445 GLY446 GLN447 LYS448 LEU449 SER450 GLY451 TYR452 GLY453 LYS454 ASP455 MET456 SER457 LEU458 TYR459 GLY460 LEU461 GLU462 ASP463 TYR464 THR465 VAL466 VAL467 ARG468 HIS469 VAL470 MET471 VAL472 LYS473 HIS474

Ligands
Unit 5 CA475
Unit 6 CA475
Unit 7 CA475
Unit 8 CA475

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany