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Sequence, Chains, Asymmetric and Biological Units

Title DNA POLYMERASE FROM BACTERIOPHAGE RB69, ALPHA-CARBONS ONLY, WITH DNA MODELED IN THE POLYMERASE ACTIVE SITE, THEORETICAL MODEL
Keywords NUCLEOTIDYLTRANSFERASE, RB69 DNA POLYMERASE (GP43), COMPLEX (NUCLEOTIDYLTRANSFERASE/DNA)
Experiment theoretical model
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1WAI     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA    E 4 80 0
2  DNA    T 40 818 0
3  DNA    P 25 506 0
4  Protein   DNA POLYMERASE  R 903 903 0
5  Protein   DNA POLYMERASE  S 218 218 0
6  Protein   DNA POLYMERASE  A 366 366 0
7  Protein   DNA POLYMERASE  B 366 366 0
total       1922 3257 0
Proteins
Unit 4 MET1 LYS2 GLU3 PHE4 TYR5 LEU6 THR7 VAL8 GLU9 GLN10 ILE11 GLY12 ASP13 SER14 ILE15 PHE16 GLU17 ARG18 TYR19 ILE20 ASP21 SER22 ASN23 GLY24 ARG25 GLU26 ARG27 THR28 ARG29 GLU30 VAL31 GLU32 TYR33 LYS34 PRO35 SER36 LEU37 PHE38 ALA39 HIS40 CYS41 PRO42 GLU43 SER44 GLN45 ALA46 THR47 LYS48 TYR49 PHE50 ASP51 ILE52 TYR53 GLY54 LYS55 PRO56 CYS57 THR58 ARG59 LYS60 LEU61 PHE62 ALA63 ASN64 MET65 ARG66 ASP67 ALA68 SER69 GLN70 TRP71 ILE72 LYS73 ARG74 MET75 GLU76 ASP77 ILE78 GLY79 LEU80 GLU81 ALA82 LEU83 GLY84 MET85 ASP86 ASP87 PHE88 LYS89 LEU90 ALA91 TYR92 LEU93 SER94 ASP95 THR96 TYR97 ASN98 TYR99 GLU100 ILE101 LYS102 TYR103 ASP104 HIS105 THR106 LYS107 ILE108 ARG109 VAL110 ALA111 ASN112 PHE113 ASP114 ILE115 GLU116 VAL117 THR118 SER119 PRO120 ASP121 GLY122 PHE123 PRO124 GLU125 PRO126 SER127 GLN128 ALA129 LYS130 HIS131 PRO132 ILE133 ASP134 ALA135 ILE136 THR137 HIS138 TYR139 ASP140 SER141 ILE142 ASP143 ASP144 ARG145 PHE146 TYR147 VAL148 PHE149 ASP150 LEU151 LEU152 ASN153 SER154 PRO155 TYR156 GLY157 ASN158 VAL159 GLU160 GLU161 TRP162 SER163 ILE164 GLU165 ILE166 ALA167 ALA168 LYS169 LEU170 GLN171 GLU172 GLN173 GLY174 GLY175 ASP176 GLU177 VAL178 PRO179 SER180 GLU181 ILE182 ILE183 ASP184 LYS185 ILE186 ILE187 TYR188 MET189 PRO190 PHE191 ASP192 ASN193 GLU194 LYS195 GLU196 LEU197 LEU198 MET199 GLU200 TYR201 LEU202 ASN203 PHE204 TRP205 GLN206 GLN207 LYS208 THR209 PRO210 VAL211 ILE212 LEU213 THR214 GLY215 TRP216 ASN217 VAL218 GLU219 SER220 PHE221 ASP222 ILE223 PRO224 TYR225 VAL226 TYR227 ASN228 ARG229 ILE230 LYS231 ASN232 ILE233 PHE234 GLY235 GLU236 SER237 THR238 ALA239 LYS240 ARG241 LEU242 SER243 PRO244 HIS245 ARG246 LYS247 THR248 ARG249 VAL250 LYS251 VAL252 ILE253 GLU254 ASN255 MET256 TYR257 GLY258 SER259 ARG260 GLU261 ILE262 ILE263 THR264 LEU265 PHE266 GLY267 ILE268 SER269 VAL270 LEU271 ASP272 TYR273 ILE274 ASP275 LEU276 TYR277 LYS278 LYS279 PHE280 SER281 PHE282 THR283 ASN284 GLN285 PRO286 SER287 TYR288 SER289 LEU290 ASP291 TYR292 ILE293 SER294 GLU295 PHE296 GLU297 LEU298 ASN299 VAL300 GLY301 LYS302 LEU303 LYS304 TYR305 ASP306 GLY307 PRO308 ILE309 SER310 LYS311 LEU312 ARG313 GLU314 SER315 ASN316 HIS317 GLN318 ARG319 TYR320 ILE321 SER322 TYR323 ASN324 ILE325 ILE326 ASP327 VAL328 TYR329 ARG330 VAL331 LEU332 GLN333 ILE334 ASP335 ALA336 LYS337 ARG338 GLN339 PHE340 ILE341 ASN342 LEU343 SER344 LEU345 ASP346 MET347 GLY348 TYR349 TYR350 ALA351 LYS352 ILE353 GLN354 ILE355 GLN356 SER357 VAL358 PHE359 SER360 PRO361 ILE362 LYS363 THR364 TRP365 ASP366 ALA367 ILE368 ILE369 PHE370 ASN371 SER372 LEU373 LYS374 GLU375 GLN376 ASN377 LYS378 VAL379 ILE380 PRO381 GLN382 GLY383 ARG384 SER385 HIS386 PRO387 VAL388 GLN389 PRO390 TYR391 PRO392 GLY393 ALA394 PHE395 VAL396 LYS397 GLU398 PRO399 ILE400 PRO401 ASN402 ARG403 TYR404 LYS405 TYR406 VAL407 MET408 SER409 PHE410 ASP411 LEU412 THR413 SER414 LEU415 TYR416 PRO417 SER418 ILE419 ILE420 ARG421 GLN422 VAL423 ASN424 ILE425 SER426 PRO427 GLU428 THR429 ILE430 ALA431 GLY432 THR433 PHE434 LYS435 VAL436 ALA437 PRO438 LEU439 HIS440 ASP441 TYR442 ILE443 ASN444 ALA445 VAL446 ALA447 GLU448 ARG449 PRO450 SER451 ASP452 VAL453 TYR454 SER455 CYS456 SER457 PRO458 ASN459 GLY460 MET461 MET462 TYR463 TYR464 LYS465 ASP466 ARG467 ASP468 GLY469 VAL470 VAL471 PRO472 THR473 GLU474 ILE475 THR476 LYS477 VAL478 PHE479 ASN480 GLN481 ARG482 LYS483 GLU484 HIS485 LYS486 GLY487 TYR488 MET489 LEU490 ALA491 ALA492 GLN493 ARG494 ASN495 GLY496 GLU497 ILE498 ILE499 LYS500 GLU501 ALA502 LEU503 HIS504 ASN505 PRO506 ASN507 LEU508 SER509 VAL510 ASP511 GLU512 PRO513 LEU514 ASP515 VAL516 ASP517 TYR518 ARG519 PHE520 ASP521 PHE522 SER523 ASP524 GLU525 ILE526 LYS527 GLU528 LYS529 ILE530 LYS531 LYS532 LEU533 SER534 ALA535 LYS536 SER537 LEU538 ASN539 GLU540 MET541 LEU542 PHE543 ARG544 ALA545 GLN546 ARG547 THR548 GLU549 VAL550 ALA551 GLY552 MET553 THR554 ALA555 GLN556 ILE557 ASN558 ARG559 LYS560 LEU561 LEU562 ILE563 ASN564 SER565 LEU566 TYR567 GLY568 ALA569 LEU570 GLY571 ASN572 VAL573 TRP574 PHE575 ARG576 TYR577 TYR578 ASP579 LEU580 ARG581 ASN582 ALA583 THR584 ALA585 ILE586 THR587 THR588 PHE589 GLY590 GLN591 MET592 ALA593 LEU594 GLN595 TRP596 ILE597 GLU598 ARG599 LYS600 VAL601 ASN602 GLU603 TYR604 LEU605 ASN606 GLU607 VAL608 CYS609 GLY610 THR611 GLU612 GLY613 GLU614 ALA615 PHE616 VAL617 LEU618 TYR619 GLY620 ASP621 THR622 ASP623 SER624 ILE625 TYR626 VAL627 SER628 ALA629 ASP630 LYS631 ILE632 ILE633 ASP634 LYS635 VAL636 GLY637 GLU638 SER639 LYS640 PHE641 ARG642 ASP643 THR644 ASN645 HIS646 TRP647 VAL648 ASP649 PHE650 LEU651 ASP652 LYS653 PHE654 ALA655 ARG656 GLU657 ARG658 MET659 GLU660 PRO661 ALA662 ILE663 ASP664 ARG665 GLY666 PHE667 ARG668 GLU669 MET670 CYS671 GLU672 TYR673 MET674 ASN675 ASN676 LYS677 GLN678 HIS679 LEU680 MET681 PHE682 MET683 ASP684 ARG685 GLU686 ALA687 ILE688 ALA689 GLY690 PRO691 PRO692 LEU693 GLY694 SER695 LYS696 GLY697 ILE698 GLY699 GLY700 PHE701 TRP702 THR703 GLY704 LYS705 LYS706 ARG707 TYR708 ALA709 LEU710 ASN711 VAL712 TRP713 ASP714 MET715 GLU716 GLY717 THR718 ARG719 TYR720 ALA721 GLU722 PRO723 LYS724 LEU725 LYS726 ILE727 MET728 GLY729 LEU730 GLU731 THR732 GLN733 LYS734 SER735 SER736 THR737 PRO738 LYS739 ALA740 VAL741 GLN742 LYS743 ALA744 LEU745 LYS746 GLU747 CYS748 ILE749 ARG750 ARG751 MET752 LEU753 GLN754 GLU755 GLY756 GLU757 GLU758 SER759 LEU760 GLN761 GLU762 TYR763 PHE764 LYS765 GLU766 PHE767 GLU768 LYS769 GLU770 PHE771 ARG772 GLN773 LEU774 ASN775 TYR776 ILE777 SER778 ILE779 ALA780 SER781 VAL782 SER783 SER784 ALA785 ASN786 ASN787 ILE788 ALA789 LYS790 TYR791 ASP792 VAL793 GLY794 GLY795 PHE796 PRO797 GLY798 PRO799 LYS800 CYS801 PRO802 PHE803 HIS804 ILE805 ARG806 GLY807 ILE808 LEU809 THR810 TYR811 ASN812 ARG813 ALA814 ILE815 LYS816 GLY817 ASN818 ILE819 ASP820 ALA821 PRO822 GLN823 VAL824 VAL825 GLU826 GLY827 GLU828 LYS829 VAL830 TYR831 VAL832 LEU833 PRO834 LEU835 ARG836 GLU837 GLY838 ASN839 PRO840 PHE841 GLY842 ASP843 LYS844 CYS845 ILE846 ALA847 TRP848 PRO849 SER850 GLY851 THR852 GLU853 ILE854 THR855 ASP856 LEU857 ILE858 LYS859 ASP860 ASP861 VAL862 LEU863 HIS864 TRP865 MET866 ASP867 TYR868 THR869 VAL870 LEU871 LEU872 GLU873 LYS874 THR875 PHE876 ILE877 LYS878 PRO879 LEU880 GLU881 GLY882 PHE883 THR884 SER885 ALA886 ALA887 LYS888 LEU889 ASP890 TYR891 GLU892 LYS893 LYS894 ALA895 SER896 LEU897 PHE898 ASP899 MET900 PHE901 ASP902 PHE903
Unit 5 GLY22 PHE23 SER24 SER25 GLU26 ASP27 LYS28 GLY29 GLU30 TRP31 LYS32 LEU33 LYS34 LEU35 ASP36 ASN37 ALA38 GLY39 ASN40 GLY41 GLN42 ALA43 VAL44 ILE45 ARG46 PHE47 LEU48 PRO49 SER50 LYS51 ASN52 ASP53 GLU54 GLN55 ALA56 PRO57 PHE58 ALA59 ILE60 LEU61 VAL62 ASN63 HIS64 GLY65 PHE66 LYS67 LYS68 ASN69 GLY70 LYS71 TRP72 TYR73 ILE74 GLU75 THR76 CYS77 SER78 SER79 THR80 HIS81 GLY82 ASP83 TYR84 ASP85 SER86 CYS87 PRO88 VAL89 CYS90 GLN91 TYR92 ILE93 SER94 LYS95 ASN96 ASP97 LEU98 TYR99 ASN100 THR101 ASP102 ASN103 LYS104 GLU105 TYR106 SER107 LEU108 VAL109 LYS110 ARG111 LYS112 THR113 SER114 TYR115 TRP116 ALA117 ASN118 ILE119 LEU120 VAL121 VAL122 LYS123 ASP124 PRO125 ALA126 ALA127 PRO128 GLU129 ASN130 GLU131 GLY132 LYS133 VAL134 PHE135 LYS136 TYR137 ARG138 PHE139 GLY140 LYS141 LYS142 ILE143 TRP144 ASP145 LYS146 ILE147 ASN148 ALA149 MET150 ILE151 ALA152 VAL153 ASP154 VAL155 GLU156 MET157 GLY158 GLU159 THR160 PRO161 VAL162 ASP163 VAL164 THR165 CYS166 PRO167 TRP168 GLU169 GLY170 ALA171 ASN172 PHE173 VAL174 LEU175 LYS176 VAL177 LYS178 GLN179 VAL180 SER181 GLY182 PHE183 SER184 ASN185 TYR186 ASP187 GLU188 SER189 LYS190 PHE191 LEU192 ASN193 GLN194 SER195 ALA196 ILE197 PRO198 ASN199 ILE200 ASP201 ASP202 GLU203 SER204 PHE205 GLN206 LYS207 GLU208 LEU209 PHE210 GLU211 GLN212 MET213 VAL214 ASP215 LEU216 SER217 GLU218 MET219 THR220 SER221 LYS222 ASP223 LYS224 PHE225 LYS226 SER227 PHE228 GLU229 GLU230 LEU231 ASN232 THR233 LYS234 PHE235 GLY236 GLN237 VAL238 MET239
Unit 6 MET1 LYS2 PHE3 THR4 VAL5 GLU6 ARG7 GLU8 HIS9 LEU10 LEU11 LYS12 PRO13 LEU14 GLN15 GLN16 VAL17 SER18 GLY19 PRO20 LEU21 GLY22 GLY23 ARG24 PRO25 THR26 LEU27 PRO28 ILE29 LEU30 GLY31 ASN32 LEU33 LEU34 LEU35 GLN36 VAL37 ALA38 ASP39 GLY40 THR41 LEU42 SER43 LEU44 THR45 GLY46 THR47 ASP48 LEU49 GLU50 MET51 GLU52 MET53 VAL54 ALA55 ARG56 VAL57 ALA58 LEU59 VAL60 GLN61 PRO62 HIS63 GLU64 PRO65 GLY66 ALA67 THR68 THR69 VAL70 PRO71 ALA72 ARG73 LYS74 PHE75 PHE76 ASP77 ILE78 CYS79 ARG80 GLY81 LEU82 PRO83 GLU84 GLY85 ALA86 GLU87 ILE88 ALA89 VAL90 GLN91 LEU92 GLU93 GLY94 GLU95 ARG96 MET97 LEU98 VAL99 ARG100 SER101 GLY102 ARG103 SER104 ARG105 PHE106 SER107 LEU108 SER109 THR110 LEU111 PRO112 ALA113 ALA114 ASP115 PHE116 PRO117 ASN118 LEU119 ASP120 ASP121 TRP122 GLN123 SER124 GLU125 VAL126 GLU127 PHE128 THR129 LEU130 PRO131 GLN132 ALA133 THR134 MET135 LYS136 ARG137 LEU138 ILE139 GLU140 ALA141 THR142 GLN143 PHE144 SER145 MET146 ALA147 HIS148 GLN149 ASP150 VAL151 ARG152 TYR153 TYR154 LEU155 ASN156 GLY157 MET158 LEU159 PHE160 GLU161 THR162 GLU163 GLY164 GLU165 GLU166 LEU167 ARG168 THR169 VAL170 ALA171 THR172 ASP173 GLY174 HIS175 ARG176 LEU177 ALA178 VAL179 CYS180 SER181 MET182 PRO183 ILE184 GLY185 GLN186 SER187 LEU188 PRO189 SER190 HIS191 SER192 VAL193 ILE194 VAL195 PRO196 ARG197 LYS198 GLY199 VAL200 ILE201 GLU202 LEU203 MET204 ARG205 MET206 LEU207 ASP208 GLY209 GLY210 ASP211 ASN212 PRO213 LEU214 ARG215 VAL216 GLN217 ILE218 GLY219 SER220 ASN221 ASN222 ILE223 ARG224 ALA225 HIS226 VAL227 GLY228 ASP229 PHE230 ILE231 PHE232 THR233 SER234 LYS235 LEU236 VAL237 ASP238 GLY239 ARG240 PHE241 PRO242 ASP243 TYR244 ARG245 ARG246 VAL247 LEU248 PRO249 LYS250 ASN251 PRO252 ASP253 LYS254 HIS255 LEU256 GLU257 ALA258 GLY259 CYS260 ASP261 LEU262 LEU263 LYS264 GLN265 ALA266 PHE267 ALA268 ARG269 ALA270 ALA271 ILE272 LEU273 SER274 ASN275 GLU276 LYS277 PHE278 ARG279 GLY280 VAL281 ARG282 LEU283 TYR284 VAL285 SER286 GLU287 ASN288 GLN289 LEU290 LYS291 ILE292 THR293 ALA294 ASN295 ASN296 PRO297 GLU298 GLN299 GLU300 GLU301 ALA302 GLU303 GLU304 ILE305 LEU306 ASP307 VAL308 THR309 TYR310 SER311 GLY312 ALA313 GLU314 MET315 GLU316 ILE317 GLY318 PHE319 ASN320 VAL321 SER322 TYR323 VAL324 LEU325 ASP326 VAL327 LEU328 ASN329 ALA330 LEU331 LYS332 CYS333 GLU334 ASN335 VAL336 ARG337 MET338 MET339 LEU340 THR341 ASP342 SER343 VAL344 SER345 SER346 VAL347 GLN348 ILE349 GLU350 ASP351 ALA352 ALA353 SER354 GLN355 SER356 ALA357 ALA358 TYR359 VAL360 VAL361 MET362 PRO363 MET364 ARG365 LEU366
Unit 7 MET1 LYS2 PHE3 THR4 VAL5 GLU6 ARG7 GLU8 HIS9 LEU10 LEU11 LYS12 PRO13 LEU14 GLN15 GLN16 VAL17 SER18 GLY19 PRO20 LEU21 GLY22 GLY23 ARG24 PRO25 THR26 LEU27 PRO28 ILE29 LEU30 GLY31 ASN32 LEU33 LEU34 LEU35 GLN36 VAL37 ALA38 ASP39 GLY40 THR41 LEU42 SER43 LEU44 THR45 GLY46 THR47 ASP48 LEU49 GLU50 MET51 GLU52 MET53 VAL54 ALA55 ARG56 VAL57 ALA58 LEU59 VAL60 GLN61 PRO62 HIS63 GLU64 PRO65 GLY66 ALA67 THR68 THR69 VAL70 PRO71 ALA72 ARG73 LYS74 PHE75 PHE76 ASP77 ILE78 CYS79 ARG80 GLY81 LEU82 PRO83 GLU84 GLY85 ALA86 GLU87 ILE88 ALA89 VAL90 GLN91 LEU92 GLU93 GLY94 GLU95 ARG96 MET97 LEU98 VAL99 ARG100 SER101 GLY102 ARG103 SER104 ARG105 PHE106 SER107 LEU108 SER109 THR110 LEU111 PRO112 ALA113 ALA114 ASP115 PHE116 PRO117 ASN118 LEU119 ASP120 ASP121 TRP122 GLN123 SER124 GLU125 VAL126 GLU127 PHE128 THR129 LEU130 PRO131 GLN132 ALA133 THR134 MET135 LYS136 ARG137 LEU138 ILE139 GLU140 ALA141 THR142 GLN143 PHE144 SER145 MET146 ALA147 HIS148 GLN149 ASP150 VAL151 ARG152 TYR153 TYR154 LEU155 ASN156 GLY157 MET158 LEU159 PHE160 GLU161 THR162 GLU163 GLY164 GLU165 GLU166 LEU167 ARG168 THR169 VAL170 ALA171 THR172 ASP173 GLY174 HIS175 ARG176 LEU177 ALA178 VAL179 CYS180 SER181 MET182 PRO183 ILE184 GLY185 GLN186 SER187 LEU188 PRO189 SER190 HIS191 SER192 VAL193 ILE194 VAL195 PRO196 ARG197 LYS198 GLY199 VAL200 ILE201 GLU202 LEU203 MET204 ARG205 MET206 LEU207 ASP208 GLY209 GLY210 ASP211 ASN212 PRO213 LEU214 ARG215 VAL216 GLN217 ILE218 GLY219 SER220 ASN221 ASN222 ILE223 ARG224 ALA225 HIS226 VAL227 GLY228 ASP229 PHE230 ILE231 PHE232 THR233 SER234 LYS235 LEU236 VAL237 ASP238 GLY239 ARG240 PHE241 PRO242 ASP243 TYR244 ARG245 ARG246 VAL247 LEU248 PRO249 LYS250 ASN251 PRO252 ASP253 LYS254 HIS255 LEU256 GLU257 ALA258 GLY259 CYS260 ASP261 LEU262 LEU263 LYS264 GLN265 ALA266 PHE267 ALA268 ARG269 ALA270 ALA271 ILE272 LEU273 SER274 ASN275 GLU276 LYS277 PHE278 ARG279 GLY280 VAL281 ARG282 LEU283 TYR284 VAL285 SER286 GLU287 ASN288 GLN289 LEU290 LYS291 ILE292 THR293 ALA294 ASN295 ASN296 PRO297 GLU298 GLN299 GLU300 GLU301 ALA302 GLU303 GLU304 ILE305 LEU306 ASP307 VAL308 THR309 TYR310 SER311 GLY312 ALA313 GLU314 MET315 GLU316 ILE317 GLY318 PHE319 ASN320 VAL321 SER322 TYR323 VAL324 LEU325 ASP326 VAL327 LEU328 ASN329 ALA330 LEU331 LYS332 CYS333 GLU334 ASN335 VAL336 ARG337 MET338 MET339 LEU340 THR341 ASP342 SER343 VAL344 SER345 SER346 VAL347 GLN348 ILE349 GLU350 ASP351 ALA352 ALA353 SER354 GLN355 SER356 ALA357 ALA358 TYR359 VAL360 VAL361 MET362 PRO363 MET364 ARG365 LEU366
Nucleic acids
Unit 1 T1 T2 T3 T4
Unit 2 T86 T87 T88 T89 T90 T91 T92 T93 T94 T95 T96 T97 T98 T99 T100 G101 C102 G103 A104 C105 G106 A107 C108 G109 A110 C111 G112 A113 C114 G115 A116 C117 G118 A119 C120 G121 A122 C123 G124 A125
Unit 3 C201 G202 C203 T204 G205 C206 T207 G208 C209 T210 G211 C212 C213 G214 C215 T216 G217 C218 T219 G220 C221 T222 G223 C224 T225
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany