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Sequence, Chains, Asymmetric and Biological Units

Title THE HIGH RESOLUTION STRUCTURE OF METHANOL DEHYDROGENASE FROM METHYLOBACTERIUM EXTORQUENS
Keywords ANISOTROPIC, ELECTRON TRANSFER, OXIDOREDUCTASE, CALCIUM-BIND METHANOL UTILIZATION, PQQ
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1W6S     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   METHANOL DEHYDROGENASE SUBUNIT 1  A 596 4607 0
2  Protein   METHANOL DEHYDROGENASE SUBUNIT 2  B 73 574 0
3  Protein   METHANOL DEHYDROGENASE SUBUNIT 1  C 597 4601 0
4  Protein   METHANOL DEHYDROGENASE SUBUNIT 2  D 73 558 0
5  Ligand   METHANOL DEHYDROGENASE SUBUNIT 1  A 4 0 37
6  Ligand   METHANOL DEHYDROGENASE SUBUNIT 1  C 3 0 31
7 Water     1437 0 1437
total       2783 10340 1505
Proteins
Unit 1 ASN1 ASP2 LYS3 LEU4 VAL5 GLU6 LEU7 SER8 LYS9 SER10 ASP11 ASP12 ASN13 TRP14 VAL15 MET16 PRO17 GLY18 LYS19 ASN20 TYR21 ASP22 SER23 ASN24 ASN25 PHE26 SER27 ASP28 LEU29 LYS30 GLN31 ILE32 ASN33 LYS34 GLY35 ASN36 VAL37 LYS38 GLN39 LEU40 ARG41 PRO42 ALA43 TRP44 THR45 PHE46 SER47 THR48 GLY49 LEU50 LEU51 ASN52 GLY53 HIS54 GLU55 GLY56 ALA57 PRO58 LEU59 VAL60 VAL61 ASP62 GLY63 LYS64 MET65 TYR66 ILE67 HIS68 THR69 SER70 PHE71 PRO72 ASN73 ASN74 THR75 PHE76 ALA77 LEU78 GLY79 LEU80 ASP81 ASP82 PRO83 GLY84 THR85 ILE86 LEU87 TRP88 GLN89 ASP90 LYS91 PRO92 LYS93 GLN94 ASN95 PRO96 ALA97 ALA98 ARG99 ALA100 VAL101 ALA102 CYS103 CYS104 ASP105 LEU106 VAL107 ASN108 ARG109 GLY110 LEU111 ALA112 TYR113 TRP114 PRO115 GLY116 ASP117 GLY118 LYS119 THR120 PRO121 ALA122 LEU123 ILE124 LEU125 LYS126 THR127 GLN128 LEU129 ASP130 GLY131 ASN132 VAL133 ALA134 ALA135 LEU136 ASN137 ALA138 GLU139 THR140 GLY141 GLU142 THR143 VAL144 TRP145 LYS146 VAL147 GLU148 ASN149 SER150 ASP151 ILE152 LYS153 VAL154 GLY155 SER156 THR157 LEU158 THR159 ILE160 ALA161 PRO162 TYR163 VAL164 VAL165 LYS166 ASP167 LYS168 VAL169 ILE170 ILE171 GLY172 SER173 SER174 GLY175 ALA176 GLU177 LEU178 GLY179 VAL180 ARG181 GLY182 TYR183 LEU184 THR185 ALA186 TYR187 ASP188 VAL189 LYS190 THR191 GLY192 GLU193 GLN194 VAL195 TRP196 ARG197 ALA198 TYR199 ALA200 THR201 GLY202 PRO203 ASP204 LYS205 ASP206 LEU207 LEU208 LEU209 ALA210 SER211 ASP212 PHE213 ASN214 ILE215 LYS216 ASN217 PRO218 HIS219 TYR220 GLY221 GLN222 LYS223 GLY224 LEU225 GLY226 THR227 GLY228 THR229 TRP230 GLU231 GLY232 ASP233 ALA234 TRP235 LYS236 ILE237 GLY238 GLY239 GLY240 THR241 ASN242 TRP243 GLY244 TRP245 TYR246 ALA247 TYR248 ASP249 PRO250 GLY251 THR252 ASN253 LEU254 ILE255 TYR256 PHE257 GLY258 THR259 GLY260 ASN261 PRO262 ALA263 PRO264 TRP265 ASN266 GLU267 THR268 MET269 ARG270 PRO271 GLY272 ASP273 ASN274 LYS275 TRP276 THR277 MET278 THR279 ILE280 PHE281 GLY282 ARG283 ASP284 ALA285 ASP286 THR287 GLY288 GLU289 ALA290 LYS291 PHE292 GLY293 TYR294 GLN295 LYS296 THR297 PRO298 HIS299 ASP300 GLU301 TRP302 ASP303 TYR304 ALA305 GLY306 VAL307 ASN308 VAL309 MET310 MET311 LEU312 SER313 GLU314 GLN315 LYS316 ASP317 LYS318 ASP319 GLY320 LYS321 ALA322 ARG323 LYS324 LEU325 LEU326 THR327 HIS328 PRO329 ASP330 ARG331 ASN332 GLY333 ILE334 VAL335 TYR336 THR337 LEU338 ASP339 ARG340 THR341 ASP342 GLY343 ALA344 LEU345 VAL346 SER347 ALA348 ASN349 LYS350 LEU351 ASP352 ASP353 THR354 VAL355 ASN356 VAL357 PHE358 LYS359 SER360 VAL361 ASP362 LEU363 LYS364 THR365 GLY366 GLN367 PRO368 VAL369 ARG370 ASP371 PRO372 GLU373 TYR374 GLY375 THR376 ARG377 MET378 ASP379 HIS380 LEU381 ALA382 LYS383 ASP384 ILE385 CYS386 PRO387 SER388 ALA389 MET390 GLY391 TYR392 HIS393 ASN394 GLN395 GLY396 HIS397 ASP398 SER399 TYR400 ASP401 PRO402 LYS403 ARG404 GLU405 LEU406 PHE407 PHE408 MET409 GLY410 ILE411 ASN412 HIS413 ILE414 CYS415 MET416 ASP417 TRP418 GLU419 PRO420 PHE421 MET422 LEU423 PRO424 TYR425 LYS426 ALA427 GLY428 GLN429 PHE430 PHE431 VAL432 GLY433 ALA434 THR435 LEU436 ASN437 MET438 TYR439 PRO440 GLY441 PRO442 LYS443 GLY444 ASP445 ARG446 GLN447 ASN448 TYR449 GLU450 GLY451 LEU452 GLY453 GLN454 ILE455 LYS456 ALA457 TYR458 ASN459 ALA460 ILE461 THR462 GLY463 ASP464 TYR465 LYS466 TRP467 GLU468 LYS469 MET470 GLU471 ARG472 PHE473 ALA474 VAL475 TRP476 GLY477 GLY478 THR479 MET480 ALA481 THR482 ALA483 GLY484 ASP485 LEU486 VAL487 PHE488 TYR489 GLY490 THR491 LEU492 ASP493 GLY494 TYR495 LEU496 LYS497 ALA498 ARG499 ASP500 SER501 ASP502 THR503 GLY504 ASP505 LEU506 LEU507 TRP508 LYS509 PHE510 LYS511 ILE512 PRO513 SER514 GLY515 ALA516 ILE517 GLY518 TYR519 PRO520 MET521 THR522 TYR523 THR524 HIS525 LYS526 GLY527 THR528 GLN529 TYR530 VAL531 ALA532 ILE533 TYR534 TYR535 GLY536 VAL537 GLY538 GLY539 TRP540 PRO541 GLY542 VAL543 GLY544 LEU545 VAL546 PHE547 ASP548 LEU549 ALA550 ASP551 PRO552 THR553 ALA554 GLY555 LEU556 GLY557 ALA558 VAL559 GLY560 ALA561 PHE562 LYS563 LYS564 LEU565 ALA566 ASN567 TYR568 THR569 GLN570 MET571 GLY572 GLY573 GLY574 VAL575 VAL576 VAL577 PHE578 SER579 LEU580 ASP581 GLY582 LYS583 GLY584 PRO585 TYR586 ASP587 ASP588 PRO589 ASN590 VAL591 GLY592 GLU593 TRP594 LYS595 SER596
Unit 2 TYR1001 ASP1002 GLY1003 THR1004 LYS1005 CYS1006 LYS1007 ALA1008 ALA1009 GLY1010 ASN1011 CYS1012 TRP1013 GLU1014 PRO1015 LYS1016 PRO1017 GLY1018 PHE1019 PRO1020 GLU1021 LYS1022 ILE1023 ALA1024 GLY1025 SER1026 LYS1027 TYR1028 ASP1029 PRO1030 LYS1031 HIS1032 ASP1033 PRO1034 LYS1035 GLU1036 LEU1037 ASN1038 LYS1039 GLN1040 ALA1041 ASP1042 SER1043 ILE1044 LYS1045 GLN1046 MET1047 GLU1048 GLU1049 ARG1050 ASN1051 LYS1052 LYS1053 ARG1054 VAL1055 GLU1056 ASN1057 PHE1058 LYS1059 LYS1060 THR1061 GLY1062 LYS1063 PHE1064 GLU1065 TYR1066 ASP1067 VAL1068 ALA1069 LYS1070 ILE1071 SER1072 ALA1073
Unit 3 ASN2001 ASP2002 LYS2003 LEU2004 VAL2005 GLU2006 LEU2007 SER2008 LYS2009 SER2010 ASP2011 ASP2012 ASN2013 TRP2014 VAL2015 MET2016 PRO2017 GLY2018 LYS2019 ASN2020 TYR2021 ASP2022 SER2023 ASN2024 ASN2025 PHE2026 SER2027 ASP2028 LEU2029 LYS2030 GLN2031 ILE2032 ASN2033 LYS2034 GLY2035 ASN2036 VAL2037 LYS2038 GLN2039 LEU2040 ARG2041 PRO2042 ALA2043 TRP2044 THR2045 PHE2046 SER2047 THR2048 GLY2049 LEU2050 LEU2051 ASN2052 GLY2053 HIS2054 GLU2055 GLY2056 ALA2057 PRO2058 LEU2059 VAL2060 VAL2061 ASP2062 GLY2063 LYS2064 MET2065 TYR2066 ILE2067 HIS2068 THR2069 SER2070 PHE2071 PRO2072 ASN2073 ASN2074 THR2075 PHE2076 ALA2077 LEU2078 GLY2079 LEU2080 ASP2081 ASP2082 PRO2083 GLY2084 THR2085 ILE2086 LEU2087 TRP2088 GLN2089 ASP2090 LYS2091 PRO2092 LYS2093 GLN2094 ASN2095 PRO2096 ALA2097 ALA2098 ARG2099 ALA2100 VAL2101 ALA2102 CYS2103 CYS2104 ASP2105 LEU2106 VAL2107 ASN2108 ARG2109 GLY2110 LEU2111 ALA2112 TYR2113 TRP2114 PRO2115 GLY2116 ASP2117 GLY2118 LYS2119 THR2120 PRO2121 ALA2122 LEU2123 ILE2124 LEU2125 LYS2126 THR2127 GLN2128 LEU2129 ASP2130 GLY2131 ASN2132 VAL2133 ALA2134 ALA2135 LEU2136 ASN2137 ALA2138 GLU2139 THR2140 GLY2141 GLU2142 THR2143 VAL2144 TRP2145 LYS2146 VAL2147 GLU2148 ASN2149 SER2150 ASP2151 ILE2152 LYS2153 VAL2154 GLY2155 SER2156 THR2157 LEU2158 THR2159 ILE2160 ALA2161 PRO2162 TYR2163 VAL2164 VAL2165 LYS2166 ASP2167 LYS2168 VAL2169 ILE2170 ILE2171 GLY2172 SER2173 SER2174 GLY2175 ALA2176 GLU2177 LEU2178 GLY2179 VAL2180 ARG2181 GLY2182 TYR2183 LEU2184 THR2185 ALA2186 TYR2187 ASP2188 VAL2189 LYS2190 THR2191 GLY2192 GLU2193 GLN2194 VAL2195 TRP2196 ARG2197 ALA2198 TYR2199 ALA2200 THR2201 GLY2202 PRO2203 ASP2204 LYS2205 ASP2206 LEU2207 LEU2208 LEU2209 ALA2210 SER2211 ASP2212 PHE2213 ASN2214 ILE2215 LYS2216 ASN2217 PRO2218 HIS2219 TYR2220 GLY2221 GLN2222 LYS2223 GLY2224 LEU2225 GLY2226 THR2227 GLY2228 THR2229 TRP2230 GLU2231 GLY2232 ASP2233 ALA2234 TRP2235 LYS2236 ILE2237 GLY2238 GLY2239 GLY2240 THR2241 ASN2242 TRP2243 GLY2244 TRP2245 TYR2246 ALA2247 TYR2248 ASP2249 PRO2250 GLY2251 THR2252 ASN2253 LEU2254 ILE2255 TYR2256 PHE2257 GLY2258 THR2259 GLY2260 ASN2261 PRO2262 ALA2263 PRO2264 TRP2265 ASN2266 GLU2267 THR2268 MET2269 ARG2270 PRO2271 GLY2272 ASP2273 ASN2274 LYS2275 TRP2276 THR2277 MET2278 THR2279 ILE2280 PHE2281 GLY2282 ARG2283 ASP2284 ALA2285 ASP2286 THR2287 GLY2288 GLU2289 ALA2290 LYS2291 PHE2292 GLY2293 TYR2294 GLN2295 LYS2296 THR2297 PRO2298 HIS2299 ASP2300 GLU2301 TRP2302 ASP2303 TYR2304 ALA2305 GLY2306 VAL2307 ASN2308 VAL2309 MET2310 MET2311 LEU2312 SER2313 GLU2314 GLN2315 LYS2316 ASP2317 LYS2318 ASP2319 GLY2320 LYS2321 ALA2322 ARG2323 LYS2324 LEU2325 LEU2326 THR2327 HIS2328 PRO2329 ASP2330 ARG2331 ASN2332 GLY2333 ILE2334 VAL2335 TYR2336 THR2337 LEU2338 ASP2339 ARG2340 THR2341 ASP2342 GLY2343 ALA2344 LEU2345 VAL2346 SER2347 ALA2348 ASN2349 LYS2350 LEU2351 ASP2352 ASP2353 THR2354 VAL2355 ASN2356 VAL2357 PHE2358 LYS2359 SER2360 VAL2361 ASP2362 LEU2363 LYS2364 THR2365 GLY2366 GLN2367 PRO2368 VAL2369 ARG2370 ASP2371 PRO2372 GLU2373 TYR2374 GLY2375 THR2376 ARG2377 MET2378 ASP2379 HIS2380 LEU2381 ALA2382 LYS2383 ASP2384 ILE2385 CYS2386 PRO2387 SER2388 ALA2389 MET2390 GLY2391 TYR2392 HIS2393 ASN2394 GLN2395 GLY2396 HIS2397 ASP2398 SER2399 TYR2400 ASP2401 PRO2402 LYS2403 ARG2404 GLU2405 LEU2406 PHE2407 PHE2408 MET2409 GLY2410 ILE2411 ASN2412 HIS2413 ILE2414 CYS2415 MET2416 ASP2417 TRP2418 GLU2419 PRO2420 PHE2421 MET2422 LEU2423 PRO2424 TYR2425 LYS2426 ALA2427 GLY2428 GLN2429 PHE2430 PHE2431 VAL2432 GLY2433 ALA2434 THR2435 LEU2436 ASN2437 MET2438 TYR2439 PRO2440 GLY2441 PRO2442 LYS2443 GLY2444 ASP2445 ARG2446 GLN2447 ASN2448 TYR2449 GLU2450 GLY2451 LEU2452 GLY2453 GLN2454 ILE2455 LYS2456 ALA2457 TYR2458 ASN2459 ALA2460 ILE2461 THR2462 GLY2463 ASP2464 TYR2465 LYS2466 TRP2467 GLU2468 LYS2469 MET2470 GLU2471 ARG2472 PHE2473 ALA2474 VAL2475 TRP2476 GLY2477 GLY2478 THR2479 MET2480 ALA2481 THR2482 ALA2483 GLY2484 ASP2485 LEU2486 VAL2487 PHE2488 TYR2489 GLY2490 THR2491 LEU2492 ASP2493 GLY2494 TYR2495 LEU2496 LYS2497 ALA2498 ARG2499 ASP2500 SER2501 ASP2502 THR2503 GLY2504 ASP2505 LEU2506 LEU2507 TRP2508 LYS2509 PHE2510 LYS2511 ILE2512 PRO2513 SER2514 GLY2515 ALA2516 ILE2517 GLY2518 TYR2519 PRO2520 MET2521 THR2522 TYR2523 THR2524 HIS2525 LYS2526 GLY2527 THR2528 GLN2529 TYR2530 VAL2531 ALA2532 ILE2533 TYR2534 TYR2535 GLY2536 VAL2537 GLY2538 GLY2539 TRP2540 PRO2541 GLY2542 VAL2543 GLY2544 LEU2545 VAL2546 PHE2547 ASP2548 LEU2549 ALA2550 ASP2551 PRO2552 THR2553 ALA2554 GLY2555 LEU2556 GLY2557 ALA2558 VAL2559 GLY2560 ALA2561 PHE2562 LYS2563 LYS2564 LEU2565 ALA2566 ASN2567 TYR2568 THR2569 GLN2570 MET2571 GLY2572 GLY2573 GLY2574 VAL2575 VAL2576 VAL2577 PHE2578 SER2579 LEU2580 ASP2581 GLY2582 LYS2583 GLY2584 PRO2585 TYR2586 ASP2587 ASP2588 PRO2589 ASN2590 VAL2591 GLY2592 GLU2593 TRP2594 LYS2595 SER2596 ALA2597
Unit 4 TYR3001 ASP3002 GLY3003 THR3004 LYS3005 CYS3006 LYS3007 ALA3008 ALA3009 GLY3010 ASN3011 CYS3012 TRP3013 GLU3014 PRO3015 LYS3016 PRO3017 GLY3018 PHE3019 PRO3020 GLU3021 LYS3022 ILE3023 ALA3024 GLY3025 SER3026 LYS3027 TYR3028 ASP3029 PRO3030 LYS3031 HIS3032 ASP3033 PRO3034 LYS3035 GLU3036 LEU3037 ASN3038 LYS3039 GLN3040 ALA3041 ASP3042 SER3043 ILE3044 LYS3045 GLN3046 MET3047 GLU3048 GLU3049 ARG3050 ASN3051 LYS3052 LYS3053 ARG3054 VAL3055 GLU3056 ASN3057 PHE3058 LYS3059 LYS3060 THR3061 GLY3062 LYS3063 PHE3064 GLU3065 TYR3066 ASP3067 VAL3068 ALA3069 LYS3070 ILE3071 SER3072 ALA3073
Ligands
Unit 5 PQQ1596 GOL1597 GOL1598 CA1599
Unit 6 PQQ3597 GOL3598 CA3599
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany