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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF YEAST YPR118W, A METHYLTHIORIBOSE-1-PHO ISOMERASE RELATED TO REGULATORY EIF2B SUBUNITS
Keywords ISOMERASE, EIF2B, METHIONINE SALVAGE PATHWAY, TRANSLATION IN OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1W2W     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   5-METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE  A 211 1593 32
2  Protein   5-METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE  B 191 1471 8
3  Protein   5-METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE  E 211 1593 32
4  Protein   5-METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE  F 191 1471 8
5  Protein   5-METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE  I 211 1593 32
6  Protein   5-METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE  J 191 1471 8
7  Protein   5-METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE  M 210 1593 24
8  Protein   5-METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE  N 191 1471 8
9  Ligand   5-METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE  A 1 0 5
10  Ligand   5-METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE  E 1 0 5
11  Ligand   5-METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE  I 1 0 5
12  Ligand   5-METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE  M 1 0 5
13 Water     922 0 922
total       2533 12256 1094
Proteins
Unit 1 MSE1 SER2 LEU3 GLU4 ALA5 ILE6 VAL7 PHE8 ASP9 ARG10 SER11 GLU12 PRO13 GLU14 ASN15 VAL16 SER17 VAL18 LYS19 VAL20 LEU21 ASP22 GLN23 LEU24 LEU25 LEU26 PRO27 TYR28 THR29 THR30 LYS31 TYR32 VAL33 PRO34 ILE35 HIS36 THR37 ILE38 ASP39 ASP40 GLY41 TYR42 SER43 VAL44 ILE45 LYS46 SER47 MSE48 GLN49 VAL50 ARG51 GLY52 ALA53 PRO54 ALA55 ILE56 ALA57 ILE58 VAL59 GLY60 SER61 LEU62 SER63 VAL64 LEU65 THR66 GLU67 VAL68 GLN69 LEU70 ILE71 LYS72 HIS73 ASN74 PRO75 THR76 SER77 ASP78 VAL79 ALA80 THR81 LEU82 TYR83 SER84 LEU85 VAL86 ASN87 TRP88 GLU89 SER90 THR91 LYS92 THR93 VAL94 LEU95 ASN96 LYS97 ARG98 LEU99 ASP100 PHE101 LEU102 LEU103 SER104 SER105 ARG106 PRO107 THR108 ALA109 VAL110 ASN111 LEU112 SER113 ASN114 SER115 LEU116 VAL117 GLU118 ILE119 LYS120 ASN121 ILE122 LEU123 LYS124 SER125 SER126 SER127 ASP128 LEU129 LYS130 ALA131 PHE132 ASP133 GLY134 SER135 LEU136 TYR137 ASN138 TYR139 VAL140 CYS141 GLU142 LEU143 ILE144 ASP145 GLU146 ASP147 LEU148 ALA149 ASN150 ASN151 MSE152 LYS153 MSE154 GLY155 ASP156 ASN157 GLY158 ALA159 LYS160 TYR161 LEU162 ILE163 ASP164 VAL165 LEU166 GLN167 LYS168 ASP169 GLY170 PHE171 LYS172 ASP173 GLU174 PHE175 ALA176 VAL177 LEU178 THR179 ILE180 CYS181 ASN182 THR183 GLY184 SER185 LEU186 ALA187 THR188 SER189 GLY190 TYR191 GLY192 THR193 ALA194 LEU195 GLY196 VAL197 ILE198 ARG199 SER200 LEU201 TRP202 LYS203 ASP204 SER205 LEU206 ALA207 LYS208 THR209 ASP210 LYS211
Unit 2 CYS221 PRO222 ARG223 MSE224 GLY225 HIS226 VAL227 PHE228 PRO229 LEU230 GLU231 THR232 ARG233 PRO234 TYR235 ASN236 GLN237 GLY238 SER239 ARG240 LEU241 THR242 ALA243 TYR244 GLU245 LEU246 VAL247 TYR248 ASP249 LYS250 ILE251 PRO252 SER253 THR254 LEU255 ILE256 THR257 ASP258 SER259 SER260 ILE261 ALA262 TYR263 ARG264 ILE265 ARG266 THR267 SER268 PRO269 ILE270 PRO271 ILE272 LYS273 ALA274 ALA275 PHE276 VAL277 GLY278 ALA279 ASP280 ARG281 ILE282 VAL283 ARG284 ASN285 GLY286 ASP287 THR288 ALA289 ASN290 LYS291 ILE292 GLY293 THR294 LEU295 GLN296 LEU297 ALA298 VAL299 ILE300 CYS301 LYS302 GLN303 PHE304 GLY305 ILE306 LYS307 PHE308 PHE309 VAL310 VAL311 ALA312 PRO313 LYS314 THR315 THR316 ILE317 ASP318 ASN319 VAL320 THR321 GLU322 THR323 GLY324 ASP325 ASP326 ILE327 ILE328 VAL329 GLU330 GLU331 ARG332 ASN333 PRO334 GLU335 GLU336 PHE337 LYS338 VAL339 VAL340 THR341 GLY342 THR343 VAL344 ILE345 ASN346 PRO347 GLU348 ASN349 GLY350 SER351 LEU352 ILE353 LEU354 ASN355 GLU356 SER357 GLY358 GLU359 PRO360 ILE361 THR362 GLY363 LYS364 VAL365 GLY366 ILE367 ALA368 PRO369 LEU370 GLU371 ILE372 ASN373 VAL374 TRP375 ASN376 PRO377 ALA378 PHE379 ASP380 ILE381 THR382 PRO383 HIS384 GLU385 LEU386 ILE387 ASP388 GLY389 ILE390 ILE391 THR392 GLU393 GLU394 GLY395 VAL396 PHE397 THR398 LYS399 ASN400 SER401 SER402 GLY403 GLU404 PHE405 GLN406 LEU407 GLU408 SER409 LEU410 PHE411
Unit 3 MSE1 SER2 LEU3 GLU4 ALA5 ILE6 VAL7 PHE8 ASP9 ARG10 SER11 GLU12 PRO13 GLU14 ASN15 VAL16 SER17 VAL18 LYS19 VAL20 LEU21 ASP22 GLN23 LEU24 LEU25 LEU26 PRO27 TYR28 THR29 THR30 LYS31 TYR32 VAL33 PRO34 ILE35 HIS36 THR37 ILE38 ASP39 ASP40 GLY41 TYR42 SER43 VAL44 ILE45 LYS46 SER47 MSE48 GLN49 VAL50 ARG51 GLY52 ALA53 PRO54 ALA55 ILE56 ALA57 ILE58 VAL59 GLY60 SER61 LEU62 SER63 VAL64 LEU65 THR66 GLU67 VAL68 GLN69 LEU70 ILE71 LYS72 HIS73 ASN74 PRO75 THR76 SER77 ASP78 VAL79 ALA80 THR81 LEU82 TYR83 SER84 LEU85 VAL86 ASN87 TRP88 GLU89 SER90 THR91 LYS92 THR93 VAL94 LEU95 ASN96 LYS97 ARG98 LEU99 ASP100 PHE101 LEU102 LEU103 SER104 SER105 ARG106 PRO107 THR108 ALA109 VAL110 ASN111 LEU112 SER113 ASN114 SER115 LEU116 VAL117 GLU118 ILE119 LYS120 ASN121 ILE122 LEU123 LYS124 SER125 SER126 SER127 ASP128 LEU129 LYS130 ALA131 PHE132 ASP133 GLY134 SER135 LEU136 TYR137 ASN138 TYR139 VAL140 CYS141 GLU142 LEU143 ILE144 ASP145 GLU146 ASP147 LEU148 ALA149 ASN150 ASN151 MSE152 LYS153 MSE154 GLY155 ASP156 ASN157 GLY158 ALA159 LYS160 TYR161 LEU162 ILE163 ASP164 VAL165 LEU166 GLN167 LYS168 ASP169 GLY170 PHE171 LYS172 ASP173 GLU174 PHE175 ALA176 VAL177 LEU178 THR179 ILE180 CYS181 ASN182 THR183 GLY184 SER185 LEU186 ALA187 THR188 SER189 GLY190 TYR191 GLY192 THR193 ALA194 LEU195 GLY196 VAL197 ILE198 ARG199 SER200 LEU201 TRP202 LYS203 ASP204 SER205 LEU206 ALA207 LYS208 THR209 ASP210 LYS211
Unit 4 CYS221 PRO222 ARG223 MSE224 GLY225 HIS226 VAL227 PHE228 PRO229 LEU230 GLU231 THR232 ARG233 PRO234 TYR235 ASN236 GLN237 GLY238 SER239 ARG240 LEU241 THR242 ALA243 TYR244 GLU245 LEU246 VAL247 TYR248 ASP249 LYS250 ILE251 PRO252 SER253 THR254 LEU255 ILE256 THR257 ASP258 SER259 SER260 ILE261 ALA262 TYR263 ARG264 ILE265 ARG266 THR267 SER268 PRO269 ILE270 PRO271 ILE272 LYS273 ALA274 ALA275 PHE276 VAL277 GLY278 ALA279 ASP280 ARG281 ILE282 VAL283 ARG284 ASN285 GLY286 ASP287 THR288 ALA289 ASN290 LYS291 ILE292 GLY293 THR294 LEU295 GLN296 LEU297 ALA298 VAL299 ILE300 CYS301 LYS302 GLN303 PHE304 GLY305 ILE306 LYS307 PHE308 PHE309 VAL310 VAL311 ALA312 PRO313 LYS314 THR315 THR316 ILE317 ASP318 ASN319 VAL320 THR321 GLU322 THR323 GLY324 ASP325 ASP326 ILE327 ILE328 VAL329 GLU330 GLU331 ARG332 ASN333 PRO334 GLU335 GLU336 PHE337 LYS338 VAL339 VAL340 THR341 GLY342 THR343 VAL344 ILE345 ASN346 PRO347 GLU348 ASN349 GLY350 SER351 LEU352 ILE353 LEU354 ASN355 GLU356 SER357 GLY358 GLU359 PRO360 ILE361 THR362 GLY363 LYS364 VAL365 GLY366 ILE367 ALA368 PRO369 LEU370 GLU371 ILE372 ASN373 VAL374 TRP375 ASN376 PRO377 ALA378 PHE379 ASP380 ILE381 THR382 PRO383 HIS384 GLU385 LEU386 ILE387 ASP388 GLY389 ILE390 ILE391 THR392 GLU393 GLU394 GLY395 VAL396 PHE397 THR398 LYS399 ASN400 SER401 SER402 GLY403 GLU404 PHE405 GLN406 LEU407 GLU408 SER409 LEU410 PHE411
Unit 5 MSE1 SER2 LEU3 GLU4 ALA5 ILE6 VAL7 PHE8 ASP9 ARG10 SER11 GLU12 PRO13 GLU14 ASN15 VAL16 SER17 VAL18 LYS19 VAL20 LEU21 ASP22 GLN23 LEU24 LEU25 LEU26 PRO27 TYR28 THR29 THR30 LYS31 TYR32 VAL33 PRO34 ILE35 HIS36 THR37 ILE38 ASP39 ASP40 GLY41 TYR42 SER43 VAL44 ILE45 LYS46 SER47 MSE48 GLN49 VAL50 ARG51 GLY52 ALA53 PRO54 ALA55 ILE56 ALA57 ILE58 VAL59 GLY60 SER61 LEU62 SER63 VAL64 LEU65 THR66 GLU67 VAL68 GLN69 LEU70 ILE71 LYS72 HIS73 ASN74 PRO75 THR76 SER77 ASP78 VAL79 ALA80 THR81 LEU82 TYR83 SER84 LEU85 VAL86 ASN87 TRP88 GLU89 SER90 THR91 LYS92 THR93 VAL94 LEU95 ASN96 LYS97 ARG98 LEU99 ASP100 PHE101 LEU102 LEU103 SER104 SER105 ARG106 PRO107 THR108 ALA109 VAL110 ASN111 LEU112 SER113 ASN114 SER115 LEU116 VAL117 GLU118 ILE119 LYS120 ASN121 ILE122 LEU123 LYS124 SER125 SER126 SER127 ASP128 LEU129 LYS130 ALA131 PHE132 ASP133 GLY134 SER135 LEU136 TYR137 ASN138 TYR139 VAL140 CYS141 GLU142 LEU143 ILE144 ASP145 GLU146 ASP147 LEU148 ALA149 ASN150 ASN151 MSE152 LYS153 MSE154 GLY155 ASP156 ASN157 GLY158 ALA159 LYS160 TYR161 LEU162 ILE163 ASP164 VAL165 LEU166 GLN167 LYS168 ASP169 GLY170 PHE171 LYS172 ASP173 GLU174 PHE175 ALA176 VAL177 LEU178 THR179 ILE180 CYS181 ASN182 THR183 GLY184 SER185 LEU186 ALA187 THR188 SER189 GLY190 TYR191 GLY192 THR193 ALA194 LEU195 GLY196 VAL197 ILE198 ARG199 SER200 LEU201 TRP202 LYS203 ASP204 SER205 LEU206 ALA207 LYS208 THR209 ASP210 LYS211
Unit 6 CYS221 PRO222 ARG223 MSE224 GLY225 HIS226 VAL227 PHE228 PRO229 LEU230 GLU231 THR232 ARG233 PRO234 TYR235 ASN236 GLN237 GLY238 SER239 ARG240 LEU241 THR242 ALA243 TYR244 GLU245 LEU246 VAL247 TYR248 ASP249 LYS250 ILE251 PRO252 SER253 THR254 LEU255 ILE256 THR257 ASP258 SER259 SER260 ILE261 ALA262 TYR263 ARG264 ILE265 ARG266 THR267 SER268 PRO269 ILE270 PRO271 ILE272 LYS273 ALA274 ALA275 PHE276 VAL277 GLY278 ALA279 ASP280 ARG281 ILE282 VAL283 ARG284 ASN285 GLY286 ASP287 THR288 ALA289 ASN290 LYS291 ILE292 GLY293 THR294 LEU295 GLN296 LEU297 ALA298 VAL299 ILE300 CYS301 LYS302 GLN303 PHE304 GLY305 ILE306 LYS307 PHE308 PHE309 VAL310 VAL311 ALA312 PRO313 LYS314 THR315 THR316 ILE317 ASP318 ASN319 VAL320 THR321 GLU322 THR323 GLY324 ASP325 ASP326 ILE327 ILE328 VAL329 GLU330 GLU331 ARG332 ASN333 PRO334 GLU335 GLU336 PHE337 LYS338 VAL339 VAL340 THR341 GLY342 THR343 VAL344 ILE345 ASN346 PRO347 GLU348 ASN349 GLY350 SER351 LEU352 ILE353 LEU354 ASN355 GLU356 SER357 GLY358 GLU359 PRO360 ILE361 THR362 GLY363 LYS364 VAL365 GLY366 ILE367 ALA368 PRO369 LEU370 GLU371 ILE372 ASN373 VAL374 TRP375 ASN376 PRO377 ALA378 PHE379 ASP380 ILE381 THR382 PRO383 HIS384 GLU385 LEU386 ILE387 ASP388 GLY389 ILE390 ILE391 THR392 GLU393 GLU394 GLY395 VAL396 PHE397 THR398 LYS399 ASN400 SER401 SER402 GLY403 GLU404 PHE405 GLN406 LEU407 GLU408 SER409 LEU410 PHE411
Unit 7 SER2 LEU3 GLU4 ALA5 ILE6 VAL7 PHE8 ASP9 ARG10 SER11 GLU12 PRO13 GLU14 ASN15 VAL16 SER17 VAL18 LYS19 VAL20 LEU21 ASP22 GLN23 LEU24 LEU25 LEU26 PRO27 TYR28 THR29 THR30 LYS31 TYR32 VAL33 PRO34 ILE35 HIS36 THR37 ILE38 ASP39 ASP40 GLY41 TYR42 SER43 VAL44 ILE45 LYS46 SER47 MSE48 GLN49 VAL50 ARG51 GLY52 ALA53 PRO54 ALA55 ILE56 ALA57 ILE58 VAL59 GLY60 SER61 LEU62 SER63 VAL64 LEU65 THR66 GLU67 VAL68 GLN69 LEU70 ILE71 LYS72 HIS73 ASN74 PRO75 THR76 SER77 ASP78 VAL79 ALA80 THR81 LEU82 TYR83 SER84 LEU85 VAL86 ASN87 TRP88 GLU89 SER90 THR91 LYS92 THR93 VAL94 LEU95 ASN96 LYS97 ARG98 LEU99 ASP100 PHE101 LEU102 LEU103 SER104 SER105 ARG106 PRO107 THR108 ALA109 VAL110 ASN111 LEU112 SER113 ASN114 SER115 LEU116 VAL117 GLU118 ILE119 LYS120 ASN121 ILE122 LEU123 LYS124 SER125 SER126 SER127 ASP128 LEU129 LYS130 ALA131 PHE132 ASP133 GLY134 SER135 LEU136 TYR137 ASN138 TYR139 VAL140 CYS141 GLU142 LEU143 ILE144 ASP145 GLU146 ASP147 LEU148 ALA149 ASN150 ASN151 MSE152 LYS153 MSE154 GLY155 ASP156 ASN157 GLY158 ALA159 LYS160 TYR161 LEU162 ILE163 ASP164 VAL165 LEU166 GLN167 LYS168 ASP169 GLY170 PHE171 LYS172 ASP173 GLU174 PHE175 ALA176 VAL177 LEU178 THR179 ILE180 CYS181 ASN182 THR183 GLY184 SER185 LEU186 ALA187 THR188 SER189 GLY190 TYR191 GLY192 THR193 ALA194 LEU195 GLY196 VAL197 ILE198 ARG199 SER200 LEU201 TRP202 LYS203 ASP204 SER205 LEU206 ALA207 LYS208 THR209 ASP210 LYS211
Unit 8 CYS221 PRO222 ARG223 MSE224 GLY225 HIS226 VAL227 PHE228 PRO229 LEU230 GLU231 THR232 ARG233 PRO234 TYR235 ASN236 GLN237 GLY238 SER239 ARG240 LEU241 THR242 ALA243 TYR244 GLU245 LEU246 VAL247 TYR248 ASP249 LYS250 ILE251 PRO252 SER253 THR254 LEU255 ILE256 THR257 ASP258 SER259 SER260 ILE261 ALA262 TYR263 ARG264 ILE265 ARG266 THR267 SER268 PRO269 ILE270 PRO271 ILE272 LYS273 ALA274 ALA275 PHE276 VAL277 GLY278 ALA279 ASP280 ARG281 ILE282 VAL283 ARG284 ASN285 GLY286 ASP287 THR288 ALA289 ASN290 LYS291 ILE292 GLY293 THR294 LEU295 GLN296 LEU297 ALA298 VAL299 ILE300 CYS301 LYS302 GLN303 PHE304 GLY305 ILE306 LYS307 PHE308 PHE309 VAL310 VAL311 ALA312 PRO313 LYS314 THR315 THR316 ILE317 ASP318 ASN319 VAL320 THR321 GLU322 THR323 GLY324 ASP325 ASP326 ILE327 ILE328 VAL329 GLU330 GLU331 ARG332 ASN333 PRO334 GLU335 GLU336 PHE337 LYS338 VAL339 VAL340 THR341 GLY342 THR343 VAL344 ILE345 ASN346 PRO347 GLU348 ASN349 GLY350 SER351 LEU352 ILE353 LEU354 ASN355 GLU356 SER357 GLY358 GLU359 PRO360 ILE361 THR362 GLY363 LYS364 VAL365 GLY366 ILE367 ALA368 PRO369 LEU370 GLU371 ILE372 ASN373 VAL374 TRP375 ASN376 PRO377 ALA378 PHE379 ASP380 ILE381 THR382 PRO383 HIS384 GLU385 LEU386 ILE387 ASP388 GLY389 ILE390 ILE391 THR392 GLU393 GLU394 GLY395 VAL396 PHE397 THR398 LYS399 ASN400 SER401 SER402 GLY403 GLU404 PHE405 GLN406 LEU407 GLU408 SER409 LEU410 PHE411
Ligands
Unit 9 SO41212
Unit 10 SO41212
Unit 11 SO41212
Unit 12 SO41212
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany