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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF NEURAMINIDASE FROM ENGLISH DUCK SUBTYPE N6 COMP 30 MM SIALIC ACID (NANA, NEU5AC), CRYSTAL SOAKED FOR 43 HOU K.
Keywords INFLUENZA TYPE A, NEURAMINIDASE, HB SITE, SIALIC ACID, SUBTY HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1W21     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NEURAMINIDASE  A 389 3008 0
2  Protein   NEURAMINIDASE  B 389 3008 0
3  Protein   NEURAMINIDASE  C 389 3008 0
4  Protein   NEURAMINIDASE  D 389 3009 0
5  Ligand    E 2 0 28
6  Ligand    F 2 0 28
7  Ligand    G 3 0 36
8  Ligand    H 2 0 28
9  Ligand   NEURAMINIDASE  A 10 0 121
10  Ligand   NEURAMINIDASE  B 9 0 107
11  Ligand   NEURAMINIDASE  C 10 0 118
12  Ligand   NEURAMINIDASE  D 5 0 63
13 Water     1723 0 1723
total       3322 12033 2252
Proteins
Unit 1 ARG88 THR89 PHE90 LEU91 ASN92 LEU93 THR94 LYS95 PRO96 LEU97 CYS98 GLU99 VAL100 ASN101 SER102 TRP103 HIS104 ILE105 LEU106 SER107 LYS108 ASP109 ASN110 ALA111 ILE112 ARG113 ILE114 GLY115 GLU116 ASP117 ALA118 HIS119 ILE120 LEU121 VAL122 THR123 ARG124 GLU125 PRO126 TYR127 LEU128 SER129 CYS130 ASP131 PRO132 GLN133 GLY134 CYS135 ARG136 MET137 PHE138 ALA139 LEU140 SER141 GLN142 GLY143 THR144 THR145 LEU146 ARG147 GLY148 ARG149 HIS150 ALA151 ASN152 GLY153 THR154 ILE155 HIS156 ASP157 ARG158 SER159 PRO160 PHE161 ARG162 ALA163 LEU164 ILE165 SER166 TRP167 GLU168 MET169 GLY170 GLN171 ALA172 PRO173 SER174 PRO175 TYR176 ASN177 THR178 ARG179 VAL180 GLU181 CYS182 ILE183 GLY184 TRP185 SER186 SER187 THR188 SER189 CYS190 HIS191 ASP192 GLY193 MET194 SER195 ARG196 MET197 SER198 ILE199 CYS200 MET201 SER202 GLY203 PRO204 ASN205 ASN206 ASN207 ALA208 SER209 ALA210 VAL211 VAL212 TRP213 TYR214 GLY215 GLY216 ARG217 PRO218 ILE219 THR220 GLU221 ILE222 PRO223 SER224 TRP225 ALA226 GLY227 ASN228 ILE229 LEU230 ARG231 THR232 GLN233 GLU234 SER235 GLU236 CYS237 VAL238 CYS239 HIS240 LYS241 GLY242 VAL243 CYS244 PRO245 VAL246 VAL247 MET248 THR249 ASP250 GLY251 PRO252 ALA253 ASN254 ASN255 ARG256 ALA257 ALA258 THR259 LYS260 ILE261 ILE262 TYR263 PHE264 LYS265 GLU266 GLY267 LYS268 ILE269 GLN270 LYS271 ILE272 GLU273 GLU274 LEU275 ALA276 GLY277 ASN278 ALA279 GLN280 HIS281 ILE282 GLU283 GLU284 CYS285 SER286 CYS287 TYR288 GLY289 ALA290 GLY291 GLY292 VAL293 ILE294 LYS295 CYS296 ILE297 CYS298 ARG299 ASP300 ASN301 TRP302 LYS303 GLY304 ALA305 ASN306 ARG307 PRO308 VAL309 ILE310 THR311 ILE312 ASP313 PRO314 GLU315 MET316 MET317 THR318 HIS319 THR320 SER321 LYS322 TYR323 LEU324 CYS325 SER326 LYS327 VAL328 LEU329 THR330 ASP331 THR332 SER333 ARG334 PRO335 ASN336 ASP337 PRO338 THR339 ASN340 GLY341 ASN342 CYS343 ASP344 ALA345 PRO346 ILE347 THR348 GLY349 GLY350 SER351 PRO352 ASP353 PRO354 GLY355 VAL356 LYS357 GLY358 PHE359 ALA360 PHE361 LEU362 ASP363 GLY364 GLU365 ASN366 SER367 TRP368 LEU369 GLY370 ARG371 THR372 ILE373 SER374 LYS375 ASP376 SER377 ARG378 SER379 GLY380 TYR381 GLU382 MET383 LEU384 LYS385 VAL386 PRO387 ASN388 ALA389 GLU390 THR391 ASP392 ILE393 GLN394 SER395 GLY396 PRO397 ILE398 SER399 ASN400 GLN401 VAL402 ILE403 VAL404 ASN405 ASN406 GLN407 ASN408 TRP409 SER410 GLY411 TYR412 SER413 GLY414 ALA415 PHE416 ILE417 ASP418 TYR419 TRP420 ALA421 ASN422 LYS423 GLU424 CYS425 PHE426 ASN427 PRO428 CYS429 PHE430 TYR431 VAL432 GLU433 LEU434 ILE435 ARG436 GLY437 ARG438 PRO439 LYS440 GLU441 SER442 SER443 VAL444 LEU445 TRP446 THR447 SER448 ASN449 SER450 ILE451 VAL452 ALA453 LEU454 CYS455 GLY456 SER457 LYS458 LYS459 ARG460 LEU461 GLY462 SER463 TRP464 SER465 TRP466 HIS467 ASP468 GLY469 ALA470 GLU471 ILE472 ILE473 TYR474 PHE475 GLU476
Unit 2 ARG1088 THR1089 PHE1090 LEU1091 ASN1092 LEU1093 THR1094 LYS1095 PRO1096 LEU1097 CYS1098 GLU1099 VAL1100 ASN1101 SER1102 TRP1103 HIS1104 ILE1105 LEU1106 SER1107 LYS1108 ASP1109 ASN1110 ALA1111 ILE1112 ARG1113 ILE1114 GLY1115 GLU1116 ASP1117 ALA1118 HIS1119 ILE1120 LEU1121 VAL1122 THR1123 ARG1124 GLU1125 PRO1126 TYR1127 LEU1128 SER1129 CYS1130 ASP1131 PRO1132 GLN1133 GLY1134 CYS1135 ARG1136 MET1137 PHE1138 ALA1139 LEU1140 SER1141 GLN1142 GLY1143 THR1144 THR1145 LEU1146 ARG1147 GLY1148 ARG1149 HIS1150 ALA1151 ASN1152 GLY1153 THR1154 ILE1155 HIS1156 ASP1157 ARG1158 SER1159 PRO1160 PHE1161 ARG1162 ALA1163 LEU1164 ILE1165 SER1166 TRP1167 GLU1168 MET1169 GLY1170 GLN1171 ALA1172 PRO1173 SER1174 PRO1175 TYR1176 ASN1177 THR1178 ARG1179 VAL1180 GLU1181 CYS1182 ILE1183 GLY1184 TRP1185 SER1186 SER1187 THR1188 SER1189 CYS1190 HIS1191 ASP1192 GLY1193 MET1194 SER1195 ARG1196 MET1197 SER1198 ILE1199 CYS1200 MET1201 SER1202 GLY1203 PRO1204 ASN1205 ASN1206 ASN1207 ALA1208 SER1209 ALA1210 VAL1211 VAL1212 TRP1213 TYR1214 GLY1215 GLY1216 ARG1217 PRO1218 ILE1219 THR1220 GLU1221 ILE1222 PRO1223 SER1224 TRP1225 ALA1226 GLY1227 ASN1228 ILE1229 LEU1230 ARG1231 THR1232 GLN1233 GLU1234 SER1235 GLU1236 CYS1237 VAL1238 CYS1239 HIS1240 LYS1241 GLY1242 VAL1243 CYS1244 PRO1245 VAL1246 VAL1247 MET1248 THR1249 ASP1250 GLY1251 PRO1252 ALA1253 ASN1254 ASN1255 ARG1256 ALA1257 ALA1258 THR1259 LYS1260 ILE1261 ILE1262 TYR1263 PHE1264 LYS1265 GLU1266 GLY1267 LYS1268 ILE1269 GLN1270 LYS1271 ILE1272 GLU1273 GLU1274 LEU1275 ALA1276 GLY1277 ASN1278 ALA1279 GLN1280 HIS1281 ILE1282 GLU1283 GLU1284 CYS1285 SER1286 CYS1287 TYR1288 GLY1289 ALA1290 GLY1291 GLY1292 VAL1293 ILE1294 LYS1295 CYS1296 ILE1297 CYS1298 ARG1299 ASP1300 ASN1301 TRP1302 LYS1303 GLY1304 ALA1305 ASN1306 ARG1307 PRO1308 VAL1309 ILE1310 THR1311 ILE1312 ASP1313 PRO1314 GLU1315 MET1316 MET1317 THR1318 HIS1319 THR1320 SER1321 LYS1322 TYR1323 LEU1324 CYS1325 SER1326 LYS1327 VAL1328 LEU1329 THR1330 ASP1331 THR1332 SER1333 ARG1334 PRO1335 ASN1336 ASP1337 PRO1338 THR1339 ASN1340 GLY1341 ASN1342 CYS1343 ASP1344 ALA1345 PRO1346 ILE1347 THR1348 GLY1349 GLY1350 SER1351 PRO1352 ASP1353 PRO1354 GLY1355 VAL1356 LYS1357 GLY1358 PHE1359 ALA1360 PHE1361 LEU1362 ASP1363 GLY1364 GLU1365 ASN1366 SER1367 TRP1368 LEU1369 GLY1370 ARG1371 THR1372 ILE1373 SER1374 LYS1375 ASP1376 SER1377 ARG1378 SER1379 GLY1380 TYR1381 GLU1382 MET1383 LEU1384 LYS1385 VAL1386 PRO1387 ASN1388 ALA1389 GLU1390 THR1391 ASP1392 ILE1393 GLN1394 SER1395 GLY1396 PRO1397 ILE1398 SER1399 ASN1400 GLN1401 VAL1402 ILE1403 VAL1404 ASN1405 ASN1406 GLN1407 ASN1408 TRP1409 SER1410 GLY1411 TYR1412 SER1413 GLY1414 ALA1415 PHE1416 ILE1417 ASP1418 TYR1419 TRP1420 ALA1421 ASN1422 LYS1423 GLU1424 CYS1425 PHE1426 ASN1427 PRO1428 CYS1429 PHE1430 TYR1431 VAL1432 GLU1433 LEU1434 ILE1435 ARG1436 GLY1437 ARG1438 PRO1439 LYS1440 GLU1441 SER1442 SER1443 VAL1444 LEU1445 TRP1446 THR1447 SER1448 ASN1449 SER1450 ILE1451 VAL1452 ALA1453 LEU1454 CYS1455 GLY1456 SER1457 LYS1458 LYS1459 ARG1460 LEU1461 GLY1462 SER1463 TRP1464 SER1465 TRP1466 HIS1467 ASP1468 GLY1469 ALA1470 GLU1471 ILE1472 ILE1473 TYR1474 PHE1475 GLU1476
Unit 3 ARG2088 THR2089 PHE2090 LEU2091 ASN2092 LEU2093 THR2094 LYS2095 PRO2096 LEU2097 CYS2098 GLU2099 VAL2100 ASN2101 SER2102 TRP2103 HIS2104 ILE2105 LEU2106 SER2107 LYS2108 ASP2109 ASN2110 ALA2111 ILE2112 ARG2113 ILE2114 GLY2115 GLU2116 ASP2117 ALA2118 HIS2119 ILE2120 LEU2121 VAL2122 THR2123 ARG2124 GLU2125 PRO2126 TYR2127 LEU2128 SER2129 CYS2130 ASP2131 PRO2132 GLN2133 GLY2134 CYS2135 ARG2136 MET2137 PHE2138 ALA2139 LEU2140 SER2141 GLN2142 GLY2143 THR2144 THR2145 LEU2146 ARG2147 GLY2148 ARG2149 HIS2150 ALA2151 ASN2152 GLY2153 THR2154 ILE2155 HIS2156 ASP2157 ARG2158 SER2159 PRO2160 PHE2161 ARG2162 ALA2163 LEU2164 ILE2165 SER2166 TRP2167 GLU2168 MET2169 GLY2170 GLN2171 ALA2172 PRO2173 SER2174 PRO2175 TYR2176 ASN2177 THR2178 ARG2179 VAL2180 GLU2181 CYS2182 ILE2183 GLY2184 TRP2185 SER2186 SER2187 THR2188 SER2189 CYS2190 HIS2191 ASP2192 GLY2193 MET2194 SER2195 ARG2196 MET2197 SER2198 ILE2199 CYS2200 MET2201 SER2202 GLY2203 PRO2204 ASN2205 ASN2206 ASN2207 ALA2208 SER2209 ALA2210 VAL2211 VAL2212 TRP2213 TYR2214 GLY2215 GLY2216 ARG2217 PRO2218 ILE2219 THR2220 GLU2221 ILE2222 PRO2223 SER2224 TRP2225 ALA2226 GLY2227 ASN2228 ILE2229 LEU2230 ARG2231 THR2232 GLN2233 GLU2234 SER2235 GLU2236 CYS2237 VAL2238 CYS2239 HIS2240 LYS2241 GLY2242 VAL2243 CYS2244 PRO2245 VAL2246 VAL2247 MET2248 THR2249 ASP2250 GLY2251 PRO2252 ALA2253 ASN2254 ASN2255 ARG2256 ALA2257 ALA2258 THR2259 LYS2260 ILE2261 ILE2262 TYR2263 PHE2264 LYS2265 GLU2266 GLY2267 LYS2268 ILE2269 GLN2270 LYS2271 ILE2272 GLU2273 GLU2274 LEU2275 ALA2276 GLY2277 ASN2278 ALA2279 GLN2280 HIS2281 ILE2282 GLU2283 GLU2284 CYS2285 SER2286 CYS2287 TYR2288 GLY2289 ALA2290 GLY2291 GLY2292 VAL2293 ILE2294 LYS2295 CYS2296 ILE2297 CYS2298 ARG2299 ASP2300 ASN2301 TRP2302 LYS2303 GLY2304 ALA2305 ASN2306 ARG2307 PRO2308 VAL2309 ILE2310 THR2311 ILE2312 ASP2313 PRO2314 GLU2315 MET2316 MET2317 THR2318 HIS2319 THR2320 SER2321 LYS2322 TYR2323 LEU2324 CYS2325 SER2326 LYS2327 VAL2328 LEU2329 THR2330 ASP2331 THR2332 SER2333 ARG2334 PRO2335 ASN2336 ASP2337 PRO2338 THR2339 ASN2340 GLY2341 ASN2342 CYS2343 ASP2344 ALA2345 PRO2346 ILE2347 THR2348 GLY2349 GLY2350 SER2351 PRO2352 ASP2353 PRO2354 GLY2355 VAL2356 LYS2357 GLY2358 PHE2359 ALA2360 PHE2361 LEU2362 ASP2363 GLY2364 GLU2365 ASN2366 SER2367 TRP2368 LEU2369 GLY2370 ARG2371 THR2372 ILE2373 SER2374 LYS2375 ASP2376 SER2377 ARG2378 SER2379 GLY2380 TYR2381 GLU2382 MET2383 LEU2384 LYS2385 VAL2386 PRO2387 ASN2388 ALA2389 GLU2390 THR2391 ASP2392 ILE2393 GLN2394 SER2395 GLY2396 PRO2397 ILE2398 SER2399 ASN2400 GLN2401 VAL2402 ILE2403 VAL2404 ASN2405 ASN2406 GLN2407 ASN2408 TRP2409 SER2410 GLY2411 TYR2412 SER2413 GLY2414 ALA2415 PHE2416 ILE2417 ASP2418 TYR2419 TRP2420 ALA2421 ASN2422 LYS2423 GLU2424 CYS2425 PHE2426 ASN2427 PRO2428 CYS2429 PHE2430 TYR2431 VAL2432 GLU2433 LEU2434 ILE2435 ARG2436 GLY2437 ARG2438 PRO2439 LYS2440 GLU2441 SER2442 SER2443 VAL2444 LEU2445 TRP2446 THR2447 SER2448 ASN2449 SER2450 ILE2451 VAL2452 ALA2453 LEU2454 CYS2455 GLY2456 SER2457 LYS2458 LYS2459 ARG2460 LEU2461 GLY2462 SER2463 TRP2464 SER2465 TRP2466 HIS2467 ASP2468 GLY2469 ALA2470 GLU2471 ILE2472 ILE2473 TYR2474 PHE2475 GLU2476
Unit 4 ARG3088 THR3089 PHE3090 LEU3091 ASN3092 LEU3093 THR3094 LYS3095 PRO3096 LEU3097 CYS3098 GLU3099 VAL3100 ASN3101 SER3102 TRP3103 HIS3104 ILE3105 LEU3106 SER3107 LYS3108 ASP3109 ASN3110 ALA3111 ILE3112 ARG3113 ILE3114 GLY3115 GLU3116 ASP3117 ALA3118 HIS3119 ILE3120 LEU3121 VAL3122 THR3123 ARG3124 GLU3125 PRO3126 TYR3127 LEU3128 SER3129 CYS3130 ASP3131 PRO3132 GLN3133 GLY3134 CYS3135 ARG3136 MET3137 PHE3138 ALA3139 LEU3140 SER3141 GLN3142 GLY3143 THR3144 THR3145 LEU3146 ARG3147 GLY3148 ARG3149 HIS3150 ALA3151 ASN3152 GLY3153 THR3154 ILE3155 HIS3156 ASP3157 ARG3158 SER3159 PRO3160 PHE3161 ARG3162 ALA3163 LEU3164 ILE3165 SER3166 TRP3167 GLU3168 MET3169 GLY3170 GLN3171 ALA3172 PRO3173 SER3174 PRO3175 TYR3176 ASN3177 THR3178 ARG3179 VAL3180 GLU3181 CYS3182 ILE3183 GLY3184 TRP3185 SER3186 SER3187 THR3188 SER3189 CYS3190 HIS3191 ASP3192 GLY3193 MET3194 SER3195 ARG3196 MET3197 SER3198 ILE3199 CYS3200 MET3201 SER3202 GLY3203 PRO3204 ASN3205 ASN3206 ASN3207 ALA3208 SER3209 ALA3210 VAL3211 VAL3212 TRP3213 TYR3214 GLY3215 GLY3216 ARG3217 PRO3218 ILE3219 THR3220 GLU3221 ILE3222 PRO3223 SER3224 TRP3225 ALA3226 GLY3227 ASN3228 ILE3229 LEU3230 ARG3231 THR3232 GLN3233 GLU3234 SER3235 GLU3236 CYS3237 VAL3238 CYS3239 HIS3240 LYS3241 GLY3242 VAL3243 CYS3244 PRO3245 VAL3246 VAL3247 MET3248 THR3249 ASP3250 GLY3251 PRO3252 ALA3253 ASN3254 ASN3255 ARG3256 ALA3257 ALA3258 THR3259 LYS3260 ILE3261 ILE3262 TYR3263 PHE3264 LYS3265 GLU3266 GLY3267 LYS3268 ILE3269 GLN3270 LYS3271 ILE3272 GLU3273 GLU3274 LEU3275 ALA3276 GLY3277 ASN3278 ALA3279 GLN3280 HIS3281 ILE3282 GLU3283 GLU3284 CYS3285 SER3286 CYS3287 TYR3288 GLY3289 ALA3290 GLY3291 GLY3292 VAL3293 ILE3294 LYS3295 CYS3296 ILE3297 CYS3298 ARG3299 ASP3300 ASN3301 TRP3302 LYS3303 GLY3304 ALA3305 ASN3306 ARG3307 PRO3308 VAL3309 ILE3310 THR3311 ILE3312 ASP3313 PRO3314 GLU3315 MET3316 MET3317 THR3318 HIS3319 THR3320 SER3321 LYS3322 TYR3323 LEU3324 CYS3325 SER3326 LYS3327 VAL3328 LEU3329 THR3330 ASP3331 THR3332 SER3333 ARG3334 PRO3335 ASN3336 ASP3337 PRO3338 THR3339 ASN3340 GLY3341 ASN3342 CYS3343 ASP3344 ALA3345 PRO3346 ILE3347 THR3348 GLY3349 GLY3350 SER3351 PRO3352 ASP3353 PRO3354 GLY3355 VAL3356 LYS3357 GLY3358 PHE3359 ALA3360 PHE3361 LEU3362 ASP3363 GLY3364 GLU3365 ASN3366 SER3367 TRP3368 LEU3369 GLY3370 ARG3371 THR3372 ILE3373 SER3374 LYS3375 ASP3376 SER3377 ARG3378 SER3379 GLY3380 TYR3381 GLU3382 MET3383 LEU3384 LYS3385 VAL3386 PRO3387 ASN3388 ALA3389 GLU3390 THR3391 ASP3392 ILE3393 GLN3394 SER3395 GLY3396 PRO3397 ILE3398 SER3399 ASN3400 GLN3401 VAL3402 ILE3403 VAL3404 ASN3405 ASN3406 GLN3407 ASN3408 TRP3409 SER3410 GLY3411 TYR3412 SER3413 GLY3414 ALA3415 PHE3416 ILE3417 ASP3418 TYR3419 TRP3420 ALA3421 ASN3422 LYS3423 GLU3424 CYS3425 PHE3426 ASN3427 PRO3428 CYS3429 PHE3430 TYR3431 VAL3432 GLU3433 LEU3434 ILE3435 ARG3436 GLY3437 ARG3438 PRO3439 LYS3440 GLU3441 SER3442 SER3443 VAL3444 LEU3445 TRP3446 THR3447 SER3448 ASN3449 SER3450 ILE3451 VAL3452 ALA3453 LEU3454 CYS3455 GLY3456 SER3457 LYS3458 LYS3459 ARG3460 LEU3461 GLY3462 SER3463 TRP3464 SER3465 TRP3466 HIS3467 ASP3468 GLY3469 ALA3470 GLU3471 ILE3472 ILE3473 TYR3474 PHE3475 GLU3476
Ligands
Unit 5 NAG1 NAG2
Unit 6 NAG1 NAG2
Unit 7 NAG1 BMA2 MAN3
Unit 8 NAG1 NAG2
Unit 9 SIA1477 SIA1478 GOL1479 NAG1480 NAG1481 BMA1484 MAN1485 MAN1486 MAN1487 CA1488
Unit 10 SIA2477 SIA2478 GOL2479 NAG2480 BMA2483 MAN2484 MAN2485 MAN2486 CA2487
Unit 11 SIA3477 SIA3478 GOL3479 NAG3481 MAN3485 MAN3486 MAN3488 MAN3489 BMA3490 CA3491
Unit 12 SIA4477 SIA4478 GOL4479 NAG4480 CA4481
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany