1VYB - Sequence, Chains, Asymmetric and Biological Units

• Title: ENDONUCLEASE DOMAIN OF HUMAN LINE1 ORF2P
• Keywords: ENDONUCLEASE, APE-1 TYPE, RETROTRANSPOSITION, RETROTRANSPOSO TRANSFERASE, RNA-DIRECTED DNA POLYMERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1VYB	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ORF2 CONTAINS A REVERSE TRANSCRIPTASE DOMAIN	A	236	1891	0
2	Protein	ORF2 CONTAINS A REVERSE TRANSCRIPTASE DOMAIN	B	233	1873	0
3	Ligand	ORF2 CONTAINS A REVERSE TRANSCRIPTASE DOMAIN	A	5	0	25
4	Ligand	ORF2 CONTAINS A REVERSE TRANSCRIPTASE DOMAIN	B	5	0	24
5	Water			448	0	448
total				927	3764	497

Proteins

Unit 1

GLY 3 SER 4 ASN 5 SER 6 HIS 7 ILE 8 THR 9 ILE 10 LEU 11 THR 12 LEU 13 ASN 14 ILE 15 ASN 16 GLY 17 LEU 18 ASN 19 SER 20 ALA 21 ILE 22 LYS 23 ARG 24 HIS 25 ARG 26 LEU 27 ALA 28 SER 29 TRP 30 ILE 31 LYS 32 SER 33 GLN 34 ASP 35 PRO 36 SER 37 VAL 38 CYS 39 CYS 40 ILE 41 GLN 42 GLU 43 THR 44 HIS 45 LEU 46 THR 47 CYS 48 ARG 49 ASP 50 THR 51 HIS 52 ARG 53 LEU 54 LYS 55 ILE 56 LYS 57 GLY 58 TRP 59 ARG 60 LYS 61 ILE 62 TYR 63 GLN 64 ALA 65 ASN 66 GLY 67 LYS 68 GLN 69 LYS 70 LYS 71 ALA 72 GLY 73 VAL 74 ALA 75 ILE 76 LEU 77 VAL 78 SER 79 ASP 80 LYS 81 THR 82 ASP 83 PHE 84 LYS 85 PRO 86 THR 87 LYS 88 ILE 89 LYS 90 ARG 91 ASP 92 LYS 93 GLU 94 GLY 95 HIS 96 TYR 97 ILE 98 MET 99 VAL 100 LYS 101 GLY 102 SER 103 ILE 104 GLN 105 GLN 106 GLU 107 GLU 108 LEU 109 THR 110 ILE 111 LEU 112 ASN 113 ILE 114 TYR 115 ALA 116 PRO 117 ASN 118 THR 119 GLY 120 ALA 121 PRO 122 ARG 123 PHE 124 ILE 125 LYS 126 GLN 127 VAL 128 LEU 129 SER 130 ASP 131 LEU 132 GLN 133 ARG 134 ASP 135 LEU 136 ASP 137 SER 138 HIS 139 THR 140 LEU 141 ILE 142 MET 143 GLY 144 ASP 145 PHE 146 ASN 147 THR 148 PRO 149 LEU 150 SER 151 THR 152 LEU 153 ASP 154 ARG 155 SER 156 THR 157 ARG 158 GLN 159 LYS 160 VAL 161 ASN 162 LYS 163 ASP 164 THR 165 GLN 166 GLU 167 LEU 168 ASN 169 SER 170 ALA 171 LEU 172 HIS 173 GLN 174 ALA 175 ASP 176 LEU 177 ILE 178 ASP 179 ILE 180 TYR 181 ARG 182 THR 183 LEU 184 HIS 185 PRO 186 LYS 187 SER 188 THR 189 GLU 190 TYR 191 THR 192 PHE 193 PHE 194 SER 195 ALA 196 PRO 197 HIS 198 HIS 199 THR 200 TYR 201 SER 202 LYS 203 ILE 204 ASP 205 HIS 206 ILE 207 VAL 208 GLY 209 SER 210 LYS 211 ALA 212 LEU 213 LEU 214 SER 215 LYS 216 CYS 217 LYS 218 ARG 219 THR 220 GLU 221 ILE 222 ILE 223 THR 224 ASN 225 TYR 226 LEU 227 SER 228 ASP 229 HIS 230 SER 231 ALA 232 ILE 233 LYS 234 LEU 235 GLU 236 LEU 237 ARG 238

Unit 2

SER 6 HIS 7 ILE 8 THR 9 ILE 10 LEU 11 THR 12 LEU 13 ASN 14 ILE 15 ASN 16 GLY 17 LEU 18 ASN 19 SER 20 ALA 21 ILE 22 LYS 23 ARG 24 HIS 25 ARG 26 LEU 27 ALA 28 SER 29 TRP 30 ILE 31 LYS 32 SER 33 GLN 34 ASP 35 PRO 36 SER 37 VAL 38 CYS 39 CYS 40 ILE 41 GLN 42 GLU 43 THR 44 HIS 45 LEU 46 THR 47 CYS 48 ARG 49 ASP 50 THR 51 HIS 52 ARG 53 LEU 54 LYS 55 ILE 56 LYS 57 GLY 58 TRP 59 ARG 60 LYS 61 ILE 62 TYR 63 GLN 64 ALA 65 ASN 66 GLY 67 LYS 68 GLN 69 LYS 70 LYS 71 ALA 72 GLY 73 VAL 74 ALA 75 ILE 76 LEU 77 VAL 78 SER 79 ASP 80 LYS 81 THR 82 ASP 83 PHE 84 LYS 85 PRO 86 THR 87 LYS 88 ILE 89 LYS 90 ARG 91 ASP 92 LYS 93 GLU 94 GLY 95 HIS 96 TYR 97 ILE 98 MET 99 VAL 100 LYS 101 GLY 102 SER 103 ILE 104 GLN 105 GLN 106 GLU 107 GLU 108 LEU 109 THR 110 ILE 111 LEU 112 ASN 113 ILE 114 TYR 115 ALA 116 PRO 117 ASN 118 THR 119 GLY 120 ALA 121 PRO 122 ARG 123 PHE 124 ILE 125 LYS 126 GLN 127 VAL 128 LEU 129 SER 130 ASP 131 LEU 132 GLN 133 ARG 134 ASP 135 LEU 136 ASP 137 SER 138 HIS 139 THR 140 LEU 141 ILE 142 MET 143 GLY 144 ASP 145 PHE 146 ASN 147 THR 148 PRO 149 LEU 150 SER 151 THR 152 LEU 153 ASP 154 ARG 155 SER 156 THR 157 ARG 158 GLN 159 LYS 160 VAL 161 ASN 162 LYS 163 ASP 164 THR 165 GLN 166 GLU 167 LEU 168 ASN 169 SER 170 ALA 171 LEU 172 HIS 173 GLN 174 ALA 175 ASP 176 LEU 177 ILE 178 ASP 179 ILE 180 TYR 181 ARG 182 THR 183 LEU 184 HIS 185 PRO 186 LYS 187 SER 188 THR 189 GLU 190 TYR 191 THR 192 PHE 193 PHE 194 SER 195 ALA 196 PRO 197 HIS 198 HIS 199 THR 200 TYR 201 SER 202 LYS 203 ILE 204 ASP 205 HIS 206 ILE 207 VAL 208 GLY 209 SER 210 LYS 211 ALA 212 LEU 213 LEU 214 SER 215 LYS 216 CYS 217 LYS 218 ARG 219 THR 220 GLU 221 ILE 222 ILE 223 THR 224 ASN 225 TYR 226 LEU 227 SER 228 ASP 229 HIS 230 SER 231 ALA 232 ILE 233 LYS 234 LEU 235 GLU 236 LEU 237 ARG 238

Ligands

Unit 3	SO4 1239 SO4 1240 SO4 1241 SO3 1242 GOL 1243
Unit 4	SO4 1239 SO4 1240 SO4 1241 SO4 1242 SO3 1243