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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A PUTATIVE NICOTINATE PHOSPHORIBOSYLTRA (YOR209C, NPT1) FROM SACCHAROMYCES CEREVISIAE AT 1.75 A RES
Keywords STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, J PROTEIN STRUCTURE INITIATIVE, PSI, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1VLP     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NICOTINATE PHOSPHORIBOSYLTRANSFERASE  A 418 3275 72
2  Protein   NICOTINATE PHOSPHORIBOSYLTRANSFERASE  B 419 3266 72
3  Protein   NICOTINATE PHOSPHORIBOSYLTRANSFERASE  C 418 3262 72
4  Protein   NICOTINATE PHOSPHORIBOSYLTRANSFERASE  D 416 3226 72
5  Ligand   NICOTINATE PHOSPHORIBOSYLTRANSFERASE  A 3 0 18
6  Ligand   NICOTINATE PHOSPHORIBOSYLTRANSFERASE  B 4 0 14
7  Ligand   NICOTINATE PHOSPHORIBOSYLTRANSFERASE  C 3 0 10
8  Ligand   NICOTINATE PHOSPHORIBOSYLTRANSFERASE  D 1 0 5
9 Water     1271 0 1271
total       2953 13029 1606
Proteins
Unit 1 HIS-2 HIS-1 HIS0 MSE1 SER2 GLU3 PRO4 VAL5 ILE6 LYS7 SER8 LEU9 LEU10 ASP11 THR12 ASP13 MSE14 TYR15 LYS16 ILE17 THR18 MSE19 HIS20 ALA21 ALA22 VAL23 PHE24 THR25 ASN26 PHE27 PRO28 ASP29 VAL30 THR31 VAL32 THR33 TYR34 LYS35 TYR36 THR37 ASN38 ARG39 SER40 SER41 GLN42 LEU43 THR44 PHE45 ASN46 LYS47 GLU48 ALA49 ILE50 ASN51 TRP52 LEU53 LYS54 GLU55 GLN56 PHE57 SER58 TYR59 LEU60 GLY61 ASN62 LEU63 ARG64 PHE65 THR66 GLU67 GLU68 GLU69 ILE70 GLU71 TYR72 LEU73 LYS74 GLN75 GLU76 ILE77 PRO78 TYR79 LEU80 PRO81 SER82 ALA83 TYR84 ILE85 LYS86 TYR87 ILE88 SER89 SER90 SER91 ASN92 TYR93 LYS94 LEU95 HIS96 PRO97 GLU98 GLU99 GLN100 ILE101 SER102 PHE103 THR104 SER105 GLU106 GLU107 ILE108 GLU109 GLY110 LYS111 PRO112 THR113 HIS114 TYR115 LYS116 LEU117 LYS118 ILE119 LEU120 VAL121 SER122 GLY123 SER124 TRP125 LYS126 ASP127 THR128 ILE129 LEU130 TYR131 GLU132 ILE133 PRO134 LEU135 LEU136 SER137 LEU138 ILE139 SER140 GLU141 ALA142 TYR143 PHE144 LYS145 PHE146 VAL147 ASP148 ILE149 ASP150 TRP151 ASP152 TYR153 GLU154 ASN155 GLN156 LEU157 GLU158 GLN159 ALA160 GLU161 LYS162 LYS163 ALA164 GLU165 THR166 LEU167 PHE168 ASP169 ASN170 GLY171 ILE172 ARG173 PHE174 SER175 GLU176 PHE177 GLY178 THR179 ARG180 ARG181 ARG182 ARG183 SER184 LEU185 LYS186 ALA187 GLN188 ASP189 LEU190 ILE191 MSE192 GLN193 GLY194 ILE195 MSE196 LYS197 ALA198 VAL199 ASN200 GLY201 ASN202 PRO203 ASP204 ARG205 ASN206 LYS207 SER208 LEU209 LEU210 LEU211 GLY212 THR213 SER214 ASN215 ILE216 LEU217 PHE218 ALA219 LYS220 LYS221 TYR222 GLY223 VAL224 LYS225 PRO226 ILE227 GLY228 THR229 VAL230 ALA231 HIS232 GLU233 TRP234 VAL235 MSE236 GLY237 VAL238 ALA239 SER240 ILE241 SER242 GLU243 ASP244 TYR245 LEU246 HIS247 ALA248 ASN249 LYS250 ASN251 ALA252 MSE253 ASP254 CYS255 TRP256 ILE257 ASN258 THR259 PHE260 GLY261 ALA262 LYS263 ASN264 ALA265 GLY266 LEU267 ALA268 LEU269 THR270 ASP271 THR272 PHE273 GLY274 THR275 ASP276 ASP277 PHE278 LEU279 LYS280 SER281 PHE282 ARG283 PRO284 PRO285 TYR286 SER287 ASP288 ALA289 TYR290 VAL291 GLY292 VAL293 ARG294 GLN295 ASP296 SER297 GLY298 ASP299 PRO300 VAL301 GLU302 TYR303 THR304 LYS305 LYS306 ILE307 SER308 HIS309 HIS310 TYR311 HIS312 ASP313 VAL314 LEU315 LYS316 LEU317 PRO318 LYS319 PHE320 SER321 LYS322 ILE323 ILE324 CYS325 TYR326 SER327 ASP328 SER329 LEU330 ASN331 VAL332 GLU333 LYS334 ALA335 ILE336 THR337 TYR338 SER339 HIS340 ALA341 ALA342 LYS343 GLU344 ASN345 GLY346 MSE347 LEU348 ALA349 THR350 PHE351 GLY352 ILE353 GLY354 THR355 ASN356 PHE357 THR358 ASN359 ASP360 PHE361 ARG362 LYS363 LYS364 SER365 GLU366 PRO367 GLN368 VAL369 LYS370 SER371 GLU372 PRO373 LEU374 ASN375 ILE376 VAL377 ILE378 LYS379 LEU380 LEU381 GLU382 VAL383 ASN384 GLY385 ASN386 HIS387 ALA388 ILE389 LYS390 ILE391 SER392 ASP393 ASN394 LEU395 GLY396 LYS397 ASN398 MSE399 GLY400 ASP401 PRO402 ALA403 THR404 VAL405 LYS406 ARG407 VAL408 LYS409 GLU410 GLU411 LEU412 GLY413 TYR414 THR415
Unit 2 MSE1 SER2 GLU3 PRO4 VAL5 ILE6 LYS7 SER8 LEU9 LEU10 ASP11 THR12 ASP13 MSE14 TYR15 LYS16 ILE17 THR18 MSE19 HIS20 ALA21 ALA22 VAL23 PHE24 THR25 ASN26 PHE27 PRO28 ASP29 VAL30 THR31 VAL32 THR33 TYR34 LYS35 TYR36 THR37 ASN38 ARG39 SER40 SER41 GLN42 LEU43 THR44 PHE45 ASN46 LYS47 GLU48 ALA49 ILE50 ASN51 TRP52 LEU53 LYS54 GLU55 GLN56 PHE57 SER58 TYR59 LEU60 GLY61 ASN62 LEU63 ARG64 PHE65 THR66 GLU67 GLU68 GLU69 ILE70 GLU71 TYR72 LEU73 LYS74 GLN75 GLU76 ILE77 PRO78 TYR79 LEU80 PRO81 SER82 ALA83 TYR84 ILE85 LYS86 TYR87 ILE88 SER89 SER90 SER91 ASN92 TYR93 LYS94 LEU95 HIS96 PRO97 GLU98 GLU99 GLN100 ILE101 SER102 PHE103 THR104 SER105 GLU106 GLU107 ILE108 GLU109 GLY110 LYS111 PRO112 THR113 HIS114 TYR115 LYS116 LEU117 LYS118 ILE119 LEU120 VAL121 SER122 GLY123 SER124 TRP125 LYS126 ASP127 THR128 ILE129 LEU130 TYR131 GLU132 ILE133 PRO134 LEU135 LEU136 SER137 LEU138 ILE139 SER140 GLU141 ALA142 TYR143 PHE144 LYS145 PHE146 VAL147 ASP148 ILE149 ASP150 TRP151 ASP152 TYR153 GLU154 ASN155 GLN156 LEU157 GLU158 GLN159 ALA160 GLU161 LYS162 LYS163 ALA164 GLU165 THR166 LEU167 PHE168 ASP169 ASN170 GLY171 ILE172 ARG173 PHE174 SER175 GLU176 PHE177 GLY178 THR179 ARG180 ARG181 ARG182 ARG183 SER184 LEU185 LYS186 ALA187 GLN188 ASP189 LEU190 ILE191 MSE192 GLN193 GLY194 ILE195 MSE196 LYS197 ALA198 VAL199 ASN200 GLY201 ASN202 PRO203 ASP204 ARG205 ASN206 LYS207 SER208 LEU209 LEU210 LEU211 GLY212 THR213 SER214 ASN215 ILE216 LEU217 PHE218 ALA219 LYS220 LYS221 TYR222 GLY223 VAL224 LYS225 PRO226 ILE227 GLY228 THR229 VAL230 ALA231 HIS232 GLU233 TRP234 VAL235 MSE236 GLY237 VAL238 ALA239 SER240 ILE241 SER242 GLU243 ASP244 TYR245 LEU246 HIS247 ALA248 ASN249 LYS250 ASN251 ALA252 MSE253 ASP254 CYS255 TRP256 ILE257 ASN258 THR259 PHE260 GLY261 ALA262 LYS263 ASN264 ALA265 GLY266 LEU267 ALA268 LEU269 THR270 ASP271 THR272 PHE273 GLY274 THR275 ASP276 ASP277 PHE278 LEU279 LYS280 SER281 PHE282 ARG283 PRO284 PRO285 TYR286 SER287 ASP288 ALA289 TYR290 VAL291 GLY292 VAL293 ARG294 GLN295 ASP296 SER297 GLY298 ASP299 PRO300 VAL301 GLU302 TYR303 THR304 LYS305 LYS306 ILE307 SER308 HIS309 HIS310 TYR311 HIS312 ASP313 VAL314 LEU315 LYS316 LEU317 PRO318 LYS319 PHE320 SER321 LYS322 ILE323 ILE324 CYS325 TYR326 SER327 ASP328 SER329 LEU330 ASN331 VAL332 GLU333 LYS334 ALA335 ILE336 THR337 TYR338 SER339 HIS340 ALA341 ALA342 LYS343 GLU344 ASN345 GLY346 MSE347 LEU348 ALA349 THR350 PHE351 GLY352 ILE353 GLY354 THR355 ASN356 PHE357 THR358 ASN359 ASP360 PHE361 ARG362 LYS363 LYS364 SER365 GLU366 PRO367 GLN368 VAL369 LYS370 SER371 GLU372 PRO373 LEU374 ASN375 ILE376 VAL377 ILE378 LYS379 LEU380 LEU381 GLU382 VAL383 ASN384 GLY385 ASN386 HIS387 ALA388 ILE389 LYS390 ILE391 SER392 ASP393 ASN394 LEU395 GLY396 LYS397 ASN398 MSE399 GLY400 ASP401 PRO402 ALA403 THR404 VAL405 LYS406 ARG407 VAL408 LYS409 GLU410 GLU411 LEU412 GLY413 TYR414 THR415 GLU416 ARG417 SER418 TRP419
Unit 3 HIS-1 HIS0 MSE1 SER2 GLU3 PRO4 VAL5 ILE6 LYS7 SER8 LEU9 LEU10 ASP11 THR12 ASP13 MSE14 TYR15 LYS16 ILE17 THR18 MSE19 HIS20 ALA21 ALA22 VAL23 PHE24 THR25 ASN26 PHE27 PRO28 ASP29 VAL30 THR31 VAL32 THR33 TYR34 LYS35 TYR36 THR37 ASN38 ARG39 SER40 SER41 GLN42 LEU43 THR44 PHE45 ASN46 LYS47 GLU48 ALA49 ILE50 ASN51 TRP52 LEU53 LYS54 GLU55 GLN56 PHE57 SER58 TYR59 LEU60 GLY61 ASN62 LEU63 ARG64 PHE65 THR66 GLU67 GLU68 GLU69 ILE70 GLU71 TYR72 LEU73 LYS74 GLN75 GLU76 ILE77 PRO78 TYR79 LEU80 PRO81 SER82 ALA83 TYR84 ILE85 LYS86 TYR87 ILE88 SER89 SER90 SER91 ASN92 TYR93 LYS94 LEU95 HIS96 PRO97 GLU98 GLU99 GLN100 ILE101 SER102 PHE103 THR104 SER105 GLU106 GLU107 ILE108 GLU109 GLY110 LYS111 PRO112 THR113 HIS114 TYR115 LYS116 LEU117 LYS118 ILE119 LEU120 VAL121 SER122 GLY123 SER124 TRP125 LYS126 ASP127 THR128 ILE129 LEU130 TYR131 GLU132 ILE133 PRO134 LEU135 LEU136 SER137 LEU138 ILE139 SER140 GLU141 ALA142 TYR143 PHE144 LYS145 PHE146 VAL147 ASP148 ILE149 ASP150 TRP151 ASP152 TYR153 GLU154 ASN155 GLN156 LEU157 GLU158 GLN159 ALA160 GLU161 LYS162 LYS163 ALA164 GLU165 THR166 LEU167 PHE168 ASP169 ASN170 GLY171 ILE172 ARG173 PHE174 SER175 GLU176 PHE177 GLY178 THR179 ARG180 ARG181 ARG182 ARG183 SER184 LEU185 LYS186 ALA187 GLN188 ASP189 LEU190 ILE191 MSE192 GLN193 GLY194 ILE195 MSE196 LYS197 ALA198 VAL199 ASN200 GLY201 ASN202 PRO203 ASP204 ARG205 ASN206 LYS207 SER208 LEU209 LEU210 LEU211 GLY212 THR213 SER214 ASN215 ILE216 LEU217 PHE218 ALA219 LYS220 LYS221 TYR222 GLY223 VAL224 LYS225 PRO226 ILE227 GLY228 THR229 VAL230 ALA231 HIS232 GLU233 TRP234 VAL235 MSE236 GLY237 VAL238 ALA239 SER240 ILE241 SER242 GLU243 ASP244 TYR245 LEU246 HIS247 ALA248 ASN249 LYS250 ASN251 ALA252 MSE253 ASP254 CYS255 TRP256 ILE257 ASN258 THR259 PHE260 GLY261 ALA262 LYS263 ASN264 ALA265 GLY266 LEU267 ALA268 LEU269 THR270 ASP271 THR272 PHE273 GLY274 THR275 ASP276 ASP277 PHE278 LEU279 LYS280 SER281 PHE282 ARG283 PRO284 PRO285 TYR286 SER287 ASP288 ALA289 TYR290 VAL291 GLY292 VAL293 ARG294 GLN295 ASP296 SER297 GLY298 ASP299 PRO300 VAL301 GLU302 TYR303 THR304 LYS305 LYS306 ILE307 SER308 HIS309 HIS310 TYR311 HIS312 ASP313 VAL314 LEU315 LYS316 LEU317 PRO318 LYS319 PHE320 SER321 LYS322 ILE323 ILE324 CYS325 TYR326 SER327 ASP328 SER329 LEU330 ASN331 VAL332 GLU333 LYS334 ALA335 ILE336 THR337 TYR338 SER339 HIS340 ALA341 ALA342 LYS343 GLU344 ASN345 GLY346 MSE347 LEU348 ALA349 THR350 PHE351 GLY352 ILE353 GLY354 THR355 ASN356 PHE357 THR358 ASN359 ASP360 PHE361 ARG362 LYS363 LYS364 SER365 GLU366 PRO367 GLN368 VAL369 LYS370 SER371 GLU372 PRO373 LEU374 ASN375 ILE376 VAL377 ILE378 LYS379 LEU380 LEU381 GLU382 VAL383 ASN384 GLY385 ASN386 HIS387 ALA388 ILE389 LYS390 ILE391 SER392 ASP393 ASN394 LEU395 GLY396 LYS397 ASN398 MSE399 GLY400 ASP401 PRO402 ALA403 THR404 VAL405 LYS406 ARG407 VAL408 LYS409 GLU410 GLU411 LEU412 GLY413 TYR414 THR415 GLU416
Unit 4 HIS0 MSE1 SER2 GLU3 PRO4 VAL5 ILE6 LYS7 SER8 LEU9 LEU10 ASP11 THR12 ASP13 MSE14 TYR15 LYS16 ILE17 THR18 MSE19 HIS20 ALA21 ALA22 VAL23 PHE24 THR25 ASN26 PHE27 PRO28 ASP29 VAL30 THR31 VAL32 THR33 TYR34 LYS35 TYR36 THR37 ASN38 ARG39 SER40 SER41 GLN42 LEU43 THR44 PHE45 ASN46 LYS47 GLU48 ALA49 ILE50 ASN51 TRP52 LEU53 LYS54 GLU55 GLN56 PHE57 SER58 TYR59 LEU60 GLY61 ASN62 LEU63 ARG64 PHE65 THR66 GLU67 GLU68 GLU69 ILE70 GLU71 TYR72 LEU73 LYS74 GLN75 GLU76 ILE77 PRO78 TYR79 LEU80 PRO81 SER82 ALA83 TYR84 ILE85 LYS86 TYR87 ILE88 SER89 SER90 SER91 ASN92 TYR93 LYS94 LEU95 HIS96 PRO97 GLU98 GLU99 GLN100 ILE101 SER102 PHE103 THR104 SER105 GLU106 GLU107 ILE108 GLU109 GLY110 LYS111 PRO112 THR113 HIS114 TYR115 LYS116 LEU117 LYS118 ILE119 LEU120 VAL121 SER122 GLY123 SER124 TRP125 LYS126 ASP127 THR128 ILE129 LEU130 TYR131 GLU132 ILE133 PRO134 LEU135 LEU136 SER137 LEU138 ILE139 SER140 GLU141 ALA142 TYR143 PHE144 LYS145 PHE146 VAL147 ASP148 ILE149 ASP150 TRP151 ASP152 TYR153 GLU154 ASN155 GLN156 LEU157 GLU158 GLN159 ALA160 GLU161 LYS162 LYS163 ALA164 GLU165 THR166 LEU167 PHE168 ASP169 ASN170 GLY171 ILE172 ARG173 PHE174 SER175 GLU176 PHE177 GLY178 THR179 ARG180 ARG181 ARG182 ARG183 SER184 LEU185 LYS186 ALA187 GLN188 ASP189 LEU190 ILE191 MSE192 GLN193 GLY194 ILE195 MSE196 LYS197 ALA198 VAL199 ASN200 GLY201 ASN202 PRO203 ASP204 ARG205 ASN206 LYS207 SER208 LEU209 LEU210 LEU211 GLY212 THR213 SER214 ASN215 ILE216 LEU217 PHE218 ALA219 LYS220 LYS221 TYR222 GLY223 VAL224 LYS225 PRO226 ILE227 GLY228 THR229 VAL230 ALA231 HIS232 GLU233 TRP234 VAL235 MSE236 GLY237 VAL238 ALA239 SER240 ILE241 SER242 GLU243 ASP244 TYR245 LEU246 HIS247 ALA248 ASN249 LYS250 ASN251 ALA252 MSE253 ASP254 CYS255 TRP256 ILE257 ASN258 THR259 PHE260 GLY261 ALA262 LYS263 ASN264 ALA265 GLY266 LEU267 ALA268 LEU269 THR270 ASP271 THR272 PHE273 GLY274 THR275 ASP276 ASP277 PHE278 LEU279 LYS280 SER281 PHE282 ARG283 PRO284 PRO285 TYR286 SER287 ASP288 ALA289 TYR290 VAL291 GLY292 VAL293 ARG294 GLN295 ASP296 SER297 GLY298 ASP299 PRO300 VAL301 GLU302 TYR303 THR304 LYS305 LYS306 ILE307 SER308 HIS309 HIS310 TYR311 HIS312 ASP313 VAL314 LEU315 LYS316 LEU317 PRO318 LYS319 PHE320 SER321 LYS322 ILE323 ILE324 CYS325 TYR326 SER327 ASP328 SER329 LEU330 ASN331 VAL332 GLU333 LYS334 ALA335 ILE336 THR337 TYR338 SER339 HIS340 ALA341 ALA342 LYS343 GLU344 ASN345 GLY346 MSE347 LEU348 ALA349 THR350 PHE351 GLY352 ILE353 GLY354 THR355 ASN356 PHE357 THR358 ASN359 ASP360 PHE361 ARG362 LYS363 LYS364 SER365 GLU366 PRO367 GLN368 VAL369 LYS370 SER371 GLU372 PRO373 LEU374 ASN375 ILE376 VAL377 ILE378 LYS379 LEU380 LEU381 GLU382 VAL383 ASN384 GLY385 ASN386 HIS387 ALA388 ILE389 LYS390 ILE391 SER392 ASP393 ASN394 LEU395 GLY396 LYS397 ASN398 MSE399 GLY400 ASP401 PRO402 ALA403 THR404 VAL405 LYS406 ARG407 VAL408 LYS409 GLU410 GLU411 LEU412 GLY413 TYR414 THR415
Ligands
Unit 5 PO4500 CL501 MES502
Unit 6 PO4500 CL501 EDO502 EDO503
Unit 7 PO4500 CL501 EDO502
Unit 8 PO4500
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany