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Sequence, Chains, Asymmetric and Biological Units

Title GPPNHP-BOUND RAB7
Keywords GTP-BINDING PROTEIN, PROTEIN TRANSPORT
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1VG8     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RAS-RELATED PROTEIN RAB-7  A 184 1476 0
2  Protein   RAS-RELATED PROTEIN RAB-7  B 179 1434 0
3  Protein   RAS-RELATED PROTEIN RAB-7  C 178 1425 0
4  Protein   RAS-RELATED PROTEIN RAB-7  D 184 1476 0
5  Ligand   RAS-RELATED PROTEIN RAB-7  A 2 0 33
6  Ligand   RAS-RELATED PROTEIN RAB-7  B 2 0 33
7  Ligand   RAS-RELATED PROTEIN RAB-7  C 2 0 33
8  Ligand   RAS-RELATED PROTEIN RAB-7  D 2 0 33
9 Water     706 0 706
total       1439 5811 838
Proteins
Unit 1 VAL1007 LEU1008 LEU1009 LYS1010 VAL1011 ILE1012 ILE1013 LEU1014 GLY1015 ASP1016 SER1017 GLY1018 VAL1019 GLY1020 LYS1021 THR1022 SER1023 LEU1024 MET1025 ASN1026 GLN1027 TYR1028 VAL1029 ASN1030 LYS1031 LYS1032 PHE1033 SER1034 ASN1035 GLN1036 TYR1037 LYS1038 ALA1039 THR1040 ILE1041 GLY1042 ALA1043 ASP1044 PHE1045 LEU1046 THR1047 LYS1048 GLU1049 VAL1050 MET1051 VAL1052 ASP1053 ASP1054 ARG1055 LEU1056 VAL1057 THR1058 MET1059 GLN1060 ILE1061 TRP1062 ASP1063 THR1064 ALA1065 GLY1066 GLN1067 GLU1068 ARG1069 PHE1070 GLN1071 SER1072 LEU1073 GLY1074 VAL1075 ALA1076 PHE1077 TYR1078 ARG1079 GLY1080 ALA1081 ASP1082 CYS1083 CYS1084 VAL1085 LEU1086 VAL1087 PHE1088 ASP1089 VAL1090 THR1091 ALA1092 PRO1093 ASN1094 THR1095 PHE1096 LYS1097 THR1098 LEU1099 ASP1100 SER1101 TRP1102 ARG1103 ASP1104 GLU1105 PHE1106 LEU1107 ILE1108 GLN1109 ALA1110 SER1111 PRO1112 ARG1113 ASP1114 PRO1115 GLU1116 ASN1117 PHE1118 PRO1119 PHE1120 VAL1121 VAL1122 LEU1123 GLY1124 ASN1125 LYS1126 ILE1127 ASP1128 LEU1129 GLU1130 ASN1131 ARG1132 GLN1133 VAL1134 ALA1135 THR1136 LYS1137 ARG1138 ALA1139 GLN1140 ALA1141 TRP1142 CYS1143 TYR1144 SER1145 LYS1146 ASN1147 ASN1148 ILE1149 PRO1150 TYR1151 PHE1152 GLU1153 THR1154 SER1155 ALA1156 LYS1157 GLU1158 ALA1159 ILE1160 ASN1161 VAL1162 GLU1163 GLN1164 ALA1165 PHE1166 GLN1167 THR1168 ILE1169 ALA1170 ARG1171 ASN1172 ALA1173 LEU1174 LYS1175 GLN1176 GLU1177 THR1178 GLU1179 VAL1180 GLU1181 LEU1182 TYR1183 ASN1184 GLU1185 PHE1186 PRO1187 GLU1188 PRO1189 ILE1190
Unit 2 LYS2006 VAL2007 LEU2008 LEU2009 LYS2010 VAL2011 ILE2012 ILE2013 LEU2014 GLY2015 ASP2016 SER2017 GLY2018 VAL2019 GLY2020 LYS2021 THR2022 SER2023 LEU2024 MET2025 ASN2026 GLN2027 TYR2028 VAL2029 ASN2030 LYS2031 LYS2032 PHE2033 SER2034 ASN2035 GLN2036 TYR2037 LYS2038 ALA2039 THR2040 ILE2041 GLY2042 ALA2043 ASP2044 PHE2045 LEU2046 THR2047 LYS2048 GLU2049 VAL2050 MET2051 VAL2052 ASP2053 ASP2054 ARG2055 LEU2056 VAL2057 THR2058 MET2059 GLN2060 ILE2061 TRP2062 ASP2063 THR2064 ALA2065 GLY2066 GLN2067 GLU2068 ARG2069 PHE2070 GLN2071 SER2072 LEU2073 GLY2074 VAL2075 ALA2076 PHE2077 TYR2078 ARG2079 GLY2080 ALA2081 ASP2082 CYS2083 CYS2084 VAL2085 LEU2086 VAL2087 PHE2088 ASP2089 VAL2090 THR2091 ALA2092 PRO2093 ASN2094 THR2095 PHE2096 LYS2097 THR2098 LEU2099 ASP2100 SER2101 TRP2102 ARG2103 ASP2104 GLU2105 PHE2106 LEU2107 ILE2108 GLN2109 ALA2110 SER2111 PRO2112 ARG2113 ASP2114 PRO2115 GLU2116 ASN2117 PHE2118 PRO2119 PHE2120 VAL2121 VAL2122 LEU2123 GLY2124 ASN2125 LYS2126 ILE2127 ASP2128 LEU2129 GLU2130 ASN2131 ARG2132 GLN2133 VAL2134 ALA2135 THR2136 LYS2137 ARG2138 ALA2139 GLN2140 ALA2141 TRP2142 CYS2143 TYR2144 SER2145 LYS2146 ASN2147 ASN2148 ILE2149 PRO2150 TYR2151 PHE2152 GLU2153 THR2154 SER2155 ALA2156 LYS2157 GLU2158 ALA2159 ILE2160 ASN2161 VAL2162 GLU2163 GLN2164 ALA2165 PHE2166 GLN2167 THR2168 ILE2169 ALA2170 ARG2171 ASN2172 ALA2173 LEU2174 LYS2175 GLN2176 GLU2177 THR2178 GLU2179 VAL2180 GLU2181 LEU2182 TYR2183 ASN2184
Unit 3 VAL3007 LEU3008 LEU3009 LYS3010 VAL3011 ILE3012 ILE3013 LEU3014 GLY3015 ASP3016 SER3017 GLY3018 VAL3019 GLY3020 LYS3021 THR3022 SER3023 LEU3024 MET3025 ASN3026 GLN3027 TYR3028 VAL3029 ASN3030 LYS3031 LYS3032 PHE3033 SER3034 ASN3035 GLN3036 TYR3037 LYS3038 ALA3039 THR3040 ILE3041 GLY3042 ALA3043 ASP3044 PHE3045 LEU3046 THR3047 LYS3048 GLU3049 VAL3050 MET3051 VAL3052 ASP3053 ASP3054 ARG3055 LEU3056 VAL3057 THR3058 MET3059 GLN3060 ILE3061 TRP3062 ASP3063 THR3064 ALA3065 GLY3066 GLN3067 GLU3068 ARG3069 PHE3070 GLN3071 SER3072 LEU3073 GLY3074 VAL3075 ALA3076 PHE3077 TYR3078 ARG3079 GLY3080 ALA3081 ASP3082 CYS3083 CYS3084 VAL3085 LEU3086 VAL3087 PHE3088 ASP3089 VAL3090 THR3091 ALA3092 PRO3093 ASN3094 THR3095 PHE3096 LYS3097 THR3098 LEU3099 ASP3100 SER3101 TRP3102 ARG3103 ASP3104 GLU3105 PHE3106 LEU3107 ILE3108 GLN3109 ALA3110 SER3111 PRO3112 ARG3113 ASP3114 PRO3115 GLU3116 ASN3117 PHE3118 PRO3119 PHE3120 VAL3121 VAL3122 LEU3123 GLY3124 ASN3125 LYS3126 ILE3127 ASP3128 LEU3129 GLU3130 ASN3131 ARG3132 GLN3133 VAL3134 ALA3135 THR3136 LYS3137 ARG3138 ALA3139 GLN3140 ALA3141 TRP3142 CYS3143 TYR3144 SER3145 LYS3146 ASN3147 ASN3148 ILE3149 PRO3150 TYR3151 PHE3152 GLU3153 THR3154 SER3155 ALA3156 LYS3157 GLU3158 ALA3159 ILE3160 ASN3161 VAL3162 GLU3163 GLN3164 ALA3165 PHE3166 GLN3167 THR3168 ILE3169 ALA3170 ARG3171 ASN3172 ALA3173 LEU3174 LYS3175 GLN3176 GLU3177 THR3178 GLU3179 VAL3180 GLU3181 LEU3182 TYR3183 ASN3184
Unit 4 VAL4007 LEU4008 LEU4009 LYS4010 VAL4011 ILE4012 ILE4013 LEU4014 GLY4015 ASP4016 SER4017 GLY4018 VAL4019 GLY4020 LYS4021 THR4022 SER4023 LEU4024 MET4025 ASN4026 GLN4027 TYR4028 VAL4029 ASN4030 LYS4031 LYS4032 PHE4033 SER4034 ASN4035 GLN4036 TYR4037 LYS4038 ALA4039 THR4040 ILE4041 GLY4042 ALA4043 ASP4044 PHE4045 LEU4046 THR4047 LYS4048 GLU4049 VAL4050 MET4051 VAL4052 ASP4053 ASP4054 ARG4055 LEU4056 VAL4057 THR4058 MET4059 GLN4060 ILE4061 TRP4062 ASP4063 THR4064 ALA4065 GLY4066 GLN4067 GLU4068 ARG4069 PHE4070 GLN4071 SER4072 LEU4073 GLY4074 VAL4075 ALA4076 PHE4077 TYR4078 ARG4079 GLY4080 ALA4081 ASP4082 CYS4083 CYS4084 VAL4085 LEU4086 VAL4087 PHE4088 ASP4089 VAL4090 THR4091 ALA4092 PRO4093 ASN4094 THR4095 PHE4096 LYS4097 THR4098 LEU4099 ASP4100 SER4101 TRP4102 ARG4103 ASP4104 GLU4105 PHE4106 LEU4107 ILE4108 GLN4109 ALA4110 SER4111 PRO4112 ARG4113 ASP4114 PRO4115 GLU4116 ASN4117 PHE4118 PRO4119 PHE4120 VAL4121 VAL4122 LEU4123 GLY4124 ASN4125 LYS4126 ILE4127 ASP4128 LEU4129 GLU4130 ASN4131 ARG4132 GLN4133 VAL4134 ALA4135 THR4136 LYS4137 ARG4138 ALA4139 GLN4140 ALA4141 TRP4142 CYS4143 TYR4144 SER4145 LYS4146 ASN4147 ASN4148 ILE4149 PRO4150 TYR4151 PHE4152 GLU4153 THR4154 SER4155 ALA4156 LYS4157 GLU4158 ALA4159 ILE4160 ASN4161 VAL4162 GLU4163 GLN4164 ALA4165 PHE4166 GLN4167 THR4168 ILE4169 ALA4170 ARG4171 ASN4172 ALA4173 LEU4174 LYS4175 GLN4176 GLU4177 THR4178 GLU4179 VAL4180 GLU4181 LEU4182 TYR4183 ASN4184 GLU4185 PHE4186 PRO4187 GLU4188 PRO4189 ILE4190
Ligands
Unit 5 GNP1400 MG1401
Unit 6 GNP2400 MG2401
Unit 7 GNP3400 MG3401
Unit 8 GNP4400 MG4401
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany