1VDK - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF FUMARASE FROM THERMUS THERMOPHILUS HB8
• Keywords: FUMARASE, TCA CYCLE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS IN RSGI, STRUCTURAL GENOMICS, LYASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1VDK	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	FUMARATE HYDRATASE CLASS II	A	458	3515	0
2	Protein	FUMARATE HYDRATASE CLASS II	B	457	3517	0
3	Water			648	0	648
total				1563	7032	648

Proteins

Unit 1

ARG 4 ILE 5 GLU 6 ARG 7 ASP 8 THR 9 MET 10 GLY 11 GLU 12 VAL 13 ARG 14 VAL 15 PRO 16 ALA 17 ASP 18 LYS 19 TYR 20 TRP 21 GLY 22 ALA 23 GLN 24 THR 25 GLN 26 ARG 27 SER 28 LEU 29 GLU 30 ASN 31 PHE 32 ARG 33 ILE 34 GLY 35 THR 36 ASP 37 ARG 38 PHE 39 ARG 40 MET 41 PRO 42 LEU 43 GLU 44 ILE 45 ILE 46 ARG 47 ALA 48 TYR 49 GLY 50 MET 51 LEU 52 LYS 53 LYS 54 ALA 55 ALA 56 ALA 57 ARG 58 ALA 59 ASN 60 LEU 61 GLU 62 LEU 63 GLY 64 GLU 65 LEU 66 PRO 67 GLU 68 GLU 69 ILE 70 ALA 71 LYS 72 ALA 73 ILE 74 ILE 75 GLN 76 ALA 77 ALA 78 GLU 79 GLU 80 VAL 81 VAL 82 GLN 83 GLY 84 LYS 85 TRP 86 ASP 87 ASP 88 HIS 89 PHE 90 PRO 91 LEU 92 VAL 93 VAL 94 PHE 95 GLN 96 THR 97 GLY 98 SER 99 GLY 100 THR 101 GLN 102 THR 103 ASN 104 MET 105 ASN 106 VAL 107 ASN 108 GLU 109 VAL 110 ILE 111 ALA 112 ASN 113 ARG 114 ALA 115 SER 116 GLU 117 ILE 118 LEU 119 GLY 120 LYS 121 PRO 122 LEU 123 GLY 124 SER 125 LYS 126 TYR 127 ALA 128 HIS 129 PRO 130 ASN 131 ASP 132 HIS 133 VAL 134 ASN 135 ARG 136 GLY 137 GLN 138 SER 139 SER 140 ASN 141 ASP 142 THR 143 PHE 144 PRO 145 THR 146 ALA 147 MET 148 TYR 149 VAL 150 ALA 151 VAL 152 ALA 153 LEU 154 ALA 155 LEU 156 HIS 157 GLN 158 ARG 159 LEU 160 TYR 161 PRO 162 ALA 163 VAL 164 GLU 165 GLY 166 LEU 167 ILE 168 ARG 169 THR 170 PHE 171 THR 172 ALA 173 LYS 174 ALA 175 GLN 176 ALA 177 PHE 178 ASP 179 GLN 180 ILE 181 VAL 182 LYS 183 VAL 184 GLY 185 ARG 186 THR 187 HIS 188 LEU 189 MET 190 ASP 191 ALA 192 VAL 193 PRO 194 ILE 195 THR 196 LEU 197 GLY 198 GLN 199 GLU 200 ILE 201 GLY 202 SER 203 TRP 204 ALA 205 ALA 206 GLN 207 LEU 208 LYS 209 THR 210 THR 211 LEU 212 ALA 213 ALA 214 VAL 215 LYS 216 GLU 217 MET 218 GLU 219 LYS 220 GLY 221 LEU 222 TYR 223 ASN 224 LEU 225 ALA 226 ILE 227 GLY 228 GLY 229 THR 230 ALA 231 VAL 232 GLY 233 THR 234 GLY 235 LEU 236 ASN 237 ALA 238 HIS 239 PRO 240 ARG 241 PHE 242 GLY 243 GLU 244 LEU 245 VAL 246 ALA 247 LYS 248 TYR 249 LEU 250 ALA 251 GLU 252 GLU 253 THR 254 GLY 255 LEU 256 PRO 257 PHE 258 ARG 259 VAL 260 ALA 261 GLU 262 ASN 263 ARG 264 PHE 265 ALA 266 ALA 267 LEU 268 ALA 269 ALA 270 HIS 271 ASP 272 GLU 273 LEU 274 VAL 275 ASN 276 VAL 277 MET 278 GLY 279 ALA 280 ILE 281 ARG 282 THR 283 LEU 284 ALA 285 GLY 286 ALA 287 LEU 288 MET 289 LYS 290 ILE 291 GLY 292 ASN 293 ASP 294 VAL 295 ARG 296 TRP 297 LEU 298 ALA 299 SER 300 GLY 301 PRO 302 TYR 303 ALA 304 GLY 305 ILE 306 GLY 307 GLU 308 ILE 309 THR 310 ILE 311 PRO 312 ALA 313 ASN 314 GLU 315 PRO 316 GLY 317 SER 318 SER 319 ILE 320 MET 321 PRO 322 GLY 323 LYS 324 VAL 325 ASN 326 PRO 327 THR 328 GLN 329 VAL 330 GLU 331 ALA 332 LEU 333 THR 334 MET 335 VAL 336 VAL 337 VAL 338 ARG 339 VAL 340 TYR 341 GLY 342 ASN 343 ASP 344 HIS 345 THR 346 VAL 347 ALA 348 PHE 349 ALA 350 GLY 351 SER 352 GLN 353 GLY 354 ASN 355 PHE 356 GLN 357 LEU 358 ASN 359 VAL 360 TYR 361 LYS 362 PRO 363 VAL 364 MET 365 ALA 366 TYR 367 SER 368 THR 369 LEU 370 GLU 371 SER 372 ILE 373 ASN 374 LEU 375 LEU 376 ALA 377 ASP 378 ALA 379 VAL 380 ALA 381 SER 382 PHE 383 ASP 384 ALA 385 HIS 386 LEU 387 ALA 388 GLN 389 GLY 390 ILE 391 GLU 392 PRO 393 ASN 394 LEU 395 GLU 396 ARG 397 ILE 398 GLU 399 GLU 400 TYR 401 LEU 402 GLN 403 LYS 404 ASN 405 PRO 406 MET 407 LEU 408 ALA 409 THR 410 ALA 411 LEU 412 ASN 413 LYS 414 ALA 415 ILE 416 GLY 417 TYR 418 ASP 419 LYS 420 ALA 421 ALA 422 GLU 423 ILE 424 VAL 425 LYS 426 LYS 427 ALA 428 LEU 429 LYS 430 LYS 433 THR 434 LEU 435 LYS 436 GLN 437 ALA 438 ALA 439 LEU 440 GLU 441 LEU 442 GLY 443 TYR 444 LEU 445 THR 446 GLU 447 GLU 448 GLU 449 PHE 450 ASP 451 ARG 452 ILE 453 VAL 454 VAL 455 PRO 456 MET 457 ARG 458 LEU 459 ALA 460 LYS 461 PRO 462 HIS 463

Unit 2

ARG 4 ILE 5 GLU 6 ARG 7 ASP 8 THR 9 MET 10 GLY 11 GLU 12 VAL 13 ARG 14 VAL 15 PRO 16 ALA 17 ASP 18 LYS 19 TYR 20 TRP 21 GLY 22 ALA 23 GLN 24 THR 25 GLN 26 ARG 27 SER 28 LEU 29 GLU 30 ASN 31 PHE 32 ARG 33 ILE 34 GLY 35 THR 36 ASP 37 ARG 38 PHE 39 ARG 40 MET 41 PRO 42 LEU 43 GLU 44 ILE 45 ILE 46 ARG 47 ALA 48 TYR 49 GLY 50 MET 51 LEU 52 LYS 53 LYS 54 ALA 55 ALA 56 ALA 57 ARG 58 ALA 59 ASN 60 LEU 61 GLU 62 LEU 63 GLY 64 GLU 65 LEU 66 PRO 67 GLU 68 GLU 69 ILE 70 ALA 71 LYS 72 ALA 73 ILE 74 ILE 75 GLN 76 ALA 77 ALA 78 GLU 79 GLU 80 VAL 81 VAL 82 GLN 83 GLY 84 LYS 85 TRP 86 ASP 87 ASP 88 HIS 89 PHE 90 PRO 91 LEU 92 VAL 93 VAL 94 PHE 95 GLN 96 THR 97 GLY 98 SER 99 GLY 100 THR 101 GLN 102 THR 103 ASN 104 MET 105 ASN 106 VAL 107 ASN 108 GLU 109 VAL 110 ILE 111 ALA 112 ASN 113 ARG 114 ALA 115 SER 116 GLU 117 ILE 118 LEU 119 GLY 120 LYS 121 PRO 122 LEU 123 GLY 124 SER 125 LYS 126 TYR 127 ALA 128 HIS 129 PRO 130 ASN 131 ASP 132 HIS 133 VAL 134 ASN 135 ARG 136 GLY 137 GLN 138 SER 139 SER 140 ASN 141 ASP 142 THR 143 PHE 144 PRO 145 THR 146 ALA 147 MET 148 TYR 149 VAL 150 ALA 151 VAL 152 ALA 153 LEU 154 ALA 155 LEU 156 HIS 157 GLN 158 ARG 159 LEU 160 TYR 161 PRO 162 ALA 163 VAL 164 GLU 165 GLY 166 LEU 167 ILE 168 ARG 169 THR 170 PHE 171 THR 172 ALA 173 LYS 174 ALA 175 GLN 176 ALA 177 PHE 178 ASP 179 GLN 180 ILE 181 VAL 182 LYS 183 VAL 184 GLY 185 ARG 186 THR 187 HIS 188 LEU 189 MET 190 ASP 191 ALA 192 VAL 193 PRO 194 ILE 195 THR 196 LEU 197 GLY 198 GLN 199 GLU 200 ILE 201 GLY 202 SER 203 TRP 204 ALA 205 ALA 206 GLN 207 LEU 208 LYS 209 THR 210 THR 211 LEU 212 ALA 213 ALA 214 VAL 215 LYS 216 GLU 217 MET 218 GLU 219 LYS 220 GLY 221 LEU 222 TYR 223 ASN 224 LEU 225 ALA 226 ILE 227 GLY 228 GLY 229 THR 230 ALA 231 VAL 232 GLY 233 THR 234 GLY 235 LEU 236 ASN 237 ALA 238 HIS 239 PRO 240 ARG 241 PHE 242 GLY 243 GLU 244 LEU 245 VAL 246 ALA 247 LYS 248 TYR 249 LEU 250 ALA 251 GLU 252 GLU 253 THR 254 GLY 255 LEU 256 PRO 257 PHE 258 ARG 259 VAL 260 ALA 261 GLU 262 ASN 263 ARG 264 PHE 265 ALA 266 ALA 267 LEU 268 ALA 269 ALA 270 HIS 271 ASP 272 GLU 273 LEU 274 VAL 275 ASN 276 VAL 277 MET 278 GLY 279 ALA 280 ILE 281 ARG 282 THR 283 LEU 284 ALA 285 GLY 286 ALA 287 LEU 288 MET 289 LYS 290 ILE 291 GLY 292 ASN 293 ASP 294 VAL 295 ARG 296 TRP 297 LEU 298 ALA 299 SER 300 GLY 301 PRO 302 TYR 303 ALA 304 GLY 305 ILE 306 GLY 307 GLU 308 ILE 309 THR 310 ILE 311 PRO 312 ALA 313 ASN 314 GLU 315 PRO 316 ILE 320 MET 321 PRO 322 GLY 323 LYS 324 VAL 325 ASN 326 PRO 327 THR 328 GLN 329 VAL 330 GLU 331 ALA 332 LEU 333 THR 334 MET 335 VAL 336 VAL 337 VAL 338 ARG 339 VAL 340 TYR 341 GLY 342 ASN 343 ASP 344 HIS 345 THR 346 VAL 347 ALA 348 PHE 349 ALA 350 GLY 351 SER 352 GLN 353 GLY 354 ASN 355 PHE 356 GLN 357 LEU 358 ASN 359 VAL 360 TYR 361 LYS 362 PRO 363 VAL 364 MET 365 ALA 366 TYR 367 SER 368 THR 369 LEU 370 GLU 371 SER 372 ILE 373 ASN 374 LEU 375 LEU 376 ALA 377 ASP 378 ALA 379 VAL 380 ALA 381 SER 382 PHE 383 ASP 384 ALA 385 HIS 386 LEU 387 ALA 388 GLN 389 GLY 390 ILE 391 GLU 392 PRO 393 ASN 394 LEU 395 GLU 396 ARG 397 ILE 398 GLU 399 GLU 400 TYR 401 LEU 402 GLN 403 LYS 404 ASN 405 PRO 406 MET 407 LEU 408 ALA 409 THR 410 ALA 411 LEU 412 ASN 413 LYS 414 ALA 415 ILE 416 GLY 417 TYR 418 ASP 419 LYS 420 ALA 421 ALA 422 GLU 423 ILE 424 VAL 425 LYS 426 LYS 427 ALA 428 LEU 429 LYS 430 GLU 431 LYS 432 LYS 433 THR 434 LEU 435 LYS 436 GLN 437 ALA 438 ALA 439 LEU 440 GLU 441 LEU 442 GLY 443 TYR 444 LEU 445 THR 446 GLU 447 GLU 448 GLU 449 PHE 450 ASP 451 ARG 452 ILE 453 VAL 454 VAL 455 PRO 456 MET 457 ARG 458 LEU 459 ALA 460 LYS 461 PRO 462 HIS 463