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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRODUCT WITH C75U MUTAION, CLEAVED IN IMIDAZOLE AND MG2+ SOLUTIONS
Keywords HDV, RIBOZYME, RNA, U1A, PRECURSOR, TRANSLATION/RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1VC6     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    B 72 1532 0
2  Protein   U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A  A 95 762 0
3  Ligand   HEPATITIS DELTA VIRUS RIBOZYME  B 1 0 1
4 Water     16 0 16
total       184 2294 17

Proteins
Unit 2 PRO4 GLU5 THR6 ARG7 PRO8 ASN9 HIS10 THR11 ILE12 TYR13 ILE14 ASN15 ASN16 LEU17 ASN18 GLU19 LYS20 ILE21 LYS22 LYS23 ASP24 GLU25 LEU26 LYS27 LYS28 SER29 LEU30 HIS31 ALA32 ILE33 PHE34 SER35 ARG36 PHE37 GLY38 GLN39 ILE40 LEU41 ASP42 ILE43 LEU44 VAL45 SER46 ARG47 SER48 LEU49 LYS50 MET51 ARG52 GLY53 GLN54 ALA55 PHE56 VAL57 ILE58 PHE59 LYS60 GLU61 VAL62 SER63 SER64 ALA65 THR66 ASN67 ALA68 LEU69 ARG70 SER71 MET72 GLN73 GLY74 PHE75 PRO76 PHE77 TYR78 ASP79 LYS80 PRO81 MET82 ARG83 ILE84 GLN85 TYR86 ALA87 LYS88 THR89 ASP90 SER91 ASP92 ILE93 ILE94 ALA95 LYS96 MET97 LYS98

Nucleic acids
Unit 1 G101 G102 C103 C104 G105 G106 C107 A108 U109 G110 G111 U112 C113 C114 C115 A116 G117 C118 C119 U120 C121 C122 U123 C124 G125 C126 U127 G128 G129 C130 G131 C132 C133 G134 G135 C136 U137 G138 G139 G140 C141 A142 A143 C144 A145 C146 C147 A148 U149 U150 G151 C152 A153 C154 U155 C156 C157 G158 G159 U160 G161 G162 U163 G164 A165 A166 U167 G168 G169 G170 A171 C172

Ligands
Unit 3 MG201

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany