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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF NAD+-DEPENDENT DNA LIGASE
Keywords NAD+-DEPENDENT DNA LIGASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1V9P     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA LIGASE  A 584 4742 0
2  Protein   DNA LIGASE  B 584 4742 0
3  Ligand   DNA LIGASE  A 2 0 23
4  Ligand   DNA LIGASE  B 2 0 23
5 Water     238 0 238
total       1410 9484 284
Proteins
Unit 1 MET1 THR2 ARG3 GLU4 GLU5 ALA6 ARG7 ARG8 ARG9 ILE10 ASN11 GLU12 LEU13 ARG14 ASP15 LEU16 ILE17 ARG18 TYR19 HIS20 ASN21 TYR22 ARG23 TYR24 TYR25 VAL26 LEU27 ALA28 ASP29 PRO30 GLU31 ILE32 SER33 ASP34 ALA35 GLU36 TYR37 ASP38 ARG39 LEU40 LEU41 ARG42 GLU43 LEU44 LYS45 GLU46 LEU47 GLU48 GLU49 ARG50 PHE51 PRO52 GLU53 PHE54 LYS55 SER56 PRO57 ASP58 SER59 PRO60 THR61 GLU62 GLN63 VAL64 GLY65 ALA66 ARG67 PRO68 LEU69 GLU70 PRO71 THR72 PHE73 ARG74 PRO75 VAL76 ARG77 HIS78 PRO79 THR80 ARG81 MET82 TYR83 SER84 LEU85 ASP86 ASN87 ALA88 PHE89 THR90 TYR91 GLU92 GLU93 VAL94 LEU95 ALA96 PHE97 GLU98 GLU99 ARG100 LEU101 GLU102 ARG103 ALA104 LEU105 GLY106 ARG107 LYS108 ARG109 PRO110 PHE111 LEU112 TYR113 THR114 VAL115 GLU116 HIS117 LYS118 VAL119 ASP120 GLY121 LEU122 SER123 VAL124 ASN125 LEU126 TYR127 TYR128 GLU129 GLU130 GLY131 VAL132 LEU133 VAL134 PHE135 GLY136 ALA137 THR138 ARG139 GLY140 ASP141 GLY142 GLU143 VAL144 GLY145 GLU146 GLU147 VAL148 THR149 GLN150 ASN151 LEU152 LEU153 THR154 ILE155 PRO156 THR157 ILE158 PRO159 ARG160 ARG161 LEU162 LYS163 GLY164 VAL165 PRO166 ASP167 ARG168 LEU169 GLU170 VAL171 ARG172 GLY173 GLU174 VAL175 TYR176 MET177 PRO178 ILE179 GLU180 ALA181 PHE182 LEU183 ARG184 LEU185 ASN186 GLU187 GLU188 LEU189 GLU190 GLU191 ARG192 GLY193 GLU194 LYS195 VAL196 PHE197 LYS198 ASN199 PRO200 ARG201 ASN202 ALA203 ALA204 ALA205 GLY206 SER207 LEU208 ARG209 GLN210 LYS211 ASP212 PRO213 ARG214 VAL215 THR216 ALA217 LYS218 ARG219 GLY220 LEU221 ARG222 ALA223 THR224 PHE225 TYR226 ALA227 LEU228 GLY229 LEU230 GLY231 LEU232 GLU233 GLU234 SER235 GLY236 LEU237 LYS238 SER239 GLN240 TYR241 GLU242 LEU243 LEU244 LEU245 TRP246 LEU247 LYS248 GLU249 LYS250 GLY251 PHE252 PRO253 VAL254 GLU255 HIS256 GLY257 TYR258 GLU259 LYS260 ALA261 LEU262 GLY263 ALA264 GLU265 GLY266 VAL267 GLU268 GLU269 VAL270 TYR271 ARG272 ARG273 PHE274 LEU275 ALA276 GLN277 ARG278 HIS279 ALA280 LEU281 PRO282 PHE283 GLU284 ALA285 ASP286 GLY287 VAL288 VAL289 VAL290 LYS291 LEU292 ASP293 ASP294 LEU295 ALA296 LEU297 TRP298 ARG299 GLU300 LEU301 GLY302 TYR303 THR304 ALA305 ARG306 ALA307 PRO308 ARG309 PHE310 ALA311 LEU312 ALA313 TYR314 LYS315 PHE316 PRO317 ALA318 GLU319 GLU320 LYS321 GLU322 THR323 ARG324 LEU325 LEU326 ASP327 VAL328 VAL329 PHE330 GLN331 VAL332 GLY333 ARG334 THR335 GLY336 ARG337 VAL338 THR339 PRO340 VAL341 GLY342 VAL343 LEU344 GLU345 PRO346 VAL347 PHE348 ILE349 GLU350 GLY351 SER352 GLU353 VAL354 SER355 ARG356 VAL357 THR358 LEU359 HIS360 ASN361 GLU362 SER363 TYR364 ILE365 GLU366 GLU367 LEU368 ASP369 ILE370 ARG371 ILE372 GLY373 ASP374 TRP375 VAL376 LEU377 VAL378 HIS379 LYS380 ALA381 GLY382 GLY383 VAL384 ILE385 PRO386 GLU387 VAL388 LEU389 ARG390 VAL391 LEU392 LYS393 GLU394 ARG395 ARG396 THR397 GLY398 GLU399 GLU400 ARG401 PRO402 ILE403 ARG404 TRP405 PRO406 GLU407 THR408 CYS409 PRO410 GLU411 CYS412 GLY413 HIS414 ARG415 LEU416 VAL417 LYS418 GLU419 GLY420 LYS421 VAL422 HIS423 ARG424 CYS425 PRO426 ASN427 PRO428 LEU429 CYS430 PRO431 ALA432 LYS433 ARG434 PHE435 GLU436 ALA437 ILE438 ARG439 HIS440 TYR441 ALA442 SER443 ARG444 LYS445 ALA446 MET447 ASP448 ILE449 GLU450 GLY451 LEU452 GLY453 GLU454 LYS455 LEU456 ILE457 GLU458 ARG459 LEU460 LEU461 GLU462 LYS463 GLY464 LEU465 VAL466 ARG467 ASP468 VAL469 ALA470 ASP471 LEU472 TYR473 HIS474 LEU475 ARG476 LYS477 GLU478 ASP479 LEU480 LEU481 GLY482 LEU483 GLU484 ARG485 MET486 GLY487 GLU488 LYS489 SER490 ALA491 GLN492 ASN493 LEU494 LEU495 ARG496 GLN497 ILE498 GLU499 GLU500 SER501 LYS502 HIS503 ARG504 GLY505 LEU506 GLU507 ARG508 LEU509 LEU510 TYR511 ALA512 LEU513 GLY514 LEU515 PRO516 GLY517 VAL518 GLY519 GLU520 VAL521 LEU522 ALA523 ARG524 ASN525 LEU526 ALA527 ARG528 ARG529 PHE530 GLY531 THR532 MET533 ASP534 ARG535 LEU536 LEU537 GLU538 ALA539 SER540 LEU541 GLU542 GLU543 LEU544 LEU545 GLU546 VAL547 GLU548 GLU549 VAL550 GLY551 GLU552 LEU553 THR554 ALA555 ARG556 ALA557 ILE558 LEU559 GLU560 THR561 LEU562 LYS563 ASP564 PRO565 ALA566 PHE567 ARG568 ASP569 LEU570 VAL571 ARG572 ARG573 LEU574 LYS575 GLU576 ALA577 GLY578 VAL579 SER580 MET581 GLU582 SER583 LYS584
Unit 2 MET2001 THR2002 ARG2003 GLU2004 GLU2005 ALA2006 ARG2007 ARG2008 ARG2009 ILE2010 ASN2011 GLU2012 LEU2013 ARG2014 ASP2015 LEU2016 ILE2017 ARG2018 TYR2019 HIS2020 ASN2021 TYR2022 ARG2023 TYR2024 TYR2025 VAL2026 LEU2027 ALA2028 ASP2029 PRO2030 GLU2031 ILE2032 SER2033 ASP2034 ALA2035 GLU2036 TYR2037 ASP2038 ARG2039 LEU2040 LEU2041 ARG2042 GLU2043 LEU2044 LYS2045 GLU2046 LEU2047 GLU2048 GLU2049 ARG2050 PHE2051 PRO2052 GLU2053 PHE2054 LYS2055 SER2056 PRO2057 ASP2058 SER2059 PRO2060 THR2061 GLU2062 GLN2063 VAL2064 GLY2065 ALA2066 ARG2067 PRO2068 LEU2069 GLU2070 PRO2071 THR2072 PHE2073 ARG2074 PRO2075 VAL2076 ARG2077 HIS2078 PRO2079 THR2080 ARG2081 MET2082 TYR2083 SER2084 LEU2085 ASP2086 ASN2087 ALA2088 PHE2089 THR2090 TYR2091 GLU2092 GLU2093 VAL2094 LEU2095 ALA2096 PHE2097 GLU2098 GLU2099 ARG2100 LEU2101 GLU2102 ARG2103 ALA2104 LEU2105 GLY2106 ARG2107 LYS2108 ARG2109 PRO2110 PHE2111 LEU2112 TYR2113 THR2114 VAL2115 GLU2116 HIS2117 LYS2118 VAL2119 ASP2120 GLY2121 LEU2122 SER2123 VAL2124 ASN2125 LEU2126 TYR2127 TYR2128 GLU2129 GLU2130 GLY2131 VAL2132 LEU2133 VAL2134 PHE2135 GLY2136 ALA2137 THR2138 ARG2139 GLY2140 ASP2141 GLY2142 GLU2143 VAL2144 GLY2145 GLU2146 GLU2147 VAL2148 THR2149 GLN2150 ASN2151 LEU2152 LEU2153 THR2154 ILE2155 PRO2156 THR2157 ILE2158 PRO2159 ARG2160 ARG2161 LEU2162 LYS2163 GLY2164 VAL2165 PRO2166 ASP2167 ARG2168 LEU2169 GLU2170 VAL2171 ARG2172 GLY2173 GLU2174 VAL2175 TYR2176 MET2177 PRO2178 ILE2179 GLU2180 ALA2181 PHE2182 LEU2183 ARG2184 LEU2185 ASN2186 GLU2187 GLU2188 LEU2189 GLU2190 GLU2191 ARG2192 GLY2193 GLU2194 LYS2195 VAL2196 PHE2197 LYS2198 ASN2199 PRO2200 ARG2201 ASN2202 ALA2203 ALA2204 ALA2205 GLY2206 SER2207 LEU2208 ARG2209 GLN2210 LYS2211 ASP2212 PRO2213 ARG2214 VAL2215 THR2216 ALA2217 LYS2218 ARG2219 GLY2220 LEU2221 ARG2222 ALA2223 THR2224 PHE2225 TYR2226 ALA2227 LEU2228 GLY2229 LEU2230 GLY2231 LEU2232 GLU2233 GLU2234 SER2235 GLY2236 LEU2237 LYS2238 SER2239 GLN2240 TYR2241 GLU2242 LEU2243 LEU2244 LEU2245 TRP2246 LEU2247 LYS2248 GLU2249 LYS2250 GLY2251 PHE2252 PRO2253 VAL2254 GLU2255 HIS2256 GLY2257 TYR2258 GLU2259 LYS2260 ALA2261 LEU2262 GLY2263 ALA2264 GLU2265 GLY2266 VAL2267 GLU2268 GLU2269 VAL2270 TYR2271 ARG2272 ARG2273 PHE2274 LEU2275 ALA2276 GLN2277 ARG2278 HIS2279 ALA2280 LEU2281 PRO2282 PHE2283 GLU2284 ALA2285 ASP2286 GLY2287 VAL2288 VAL2289 VAL2290 LYS2291 LEU2292 ASP2293 ASP2294 LEU2295 ALA2296 LEU2297 TRP2298 ARG2299 GLU2300 LEU2301 GLY2302 TYR2303 THR2304 ALA2305 ARG2306 ALA2307 PRO2308 ARG2309 PHE2310 ALA2311 LEU2312 ALA2313 TYR2314 LYS2315 PHE2316 PRO2317 ALA2318 GLU2319 GLU2320 LYS2321 GLU2322 THR2323 ARG2324 LEU2325 LEU2326 ASP2327 VAL2328 VAL2329 PHE2330 GLN2331 VAL2332 GLY2333 ARG2334 THR2335 GLY2336 ARG2337 VAL2338 THR2339 PRO2340 VAL2341 GLY2342 VAL2343 LEU2344 GLU2345 PRO2346 VAL2347 PHE2348 ILE2349 GLU2350 GLY2351 SER2352 GLU2353 VAL2354 SER2355 ARG2356 VAL2357 THR2358 LEU2359 HIS2360 ASN2361 GLU2362 SER2363 TYR2364 ILE2365 GLU2366 GLU2367 LEU2368 ASP2369 ILE2370 ARG2371 ILE2372 GLY2373 ASP2374 TRP2375 VAL2376 LEU2377 VAL2378 HIS2379 LYS2380 ALA2381 GLY2382 GLY2383 VAL2384 ILE2385 PRO2386 GLU2387 VAL2388 LEU2389 ARG2390 VAL2391 LEU2392 LYS2393 GLU2394 ARG2395 ARG2396 THR2397 GLY2398 GLU2399 GLU2400 ARG2401 PRO2402 ILE2403 ARG2404 TRP2405 PRO2406 GLU2407 THR2408 CYS2409 PRO2410 GLU2411 CYS2412 GLY2413 HIS2414 ARG2415 LEU2416 VAL2417 LYS2418 GLU2419 GLY2420 LYS2421 VAL2422 HIS2423 ARG2424 CYS2425 PRO2426 ASN2427 PRO2428 LEU2429 CYS2430 PRO2431 ALA2432 LYS2433 ARG2434 PHE2435 GLU2436 ALA2437 ILE2438 ARG2439 HIS2440 TYR2441 ALA2442 SER2443 ARG2444 LYS2445 ALA2446 MET2447 ASP2448 ILE2449 GLU2450 GLY2451 LEU2452 GLY2453 GLU2454 LYS2455 LEU2456 ILE2457 GLU2458 ARG2459 LEU2460 LEU2461 GLU2462 LYS2463 GLY2464 LEU2465 VAL2466 ARG2467 ASP2468 VAL2469 ALA2470 ASP2471 LEU2472 TYR2473 HIS2474 LEU2475 ARG2476 LYS2477 GLU2478 ASP2479 LEU2480 LEU2481 GLY2482 LEU2483 GLU2484 ARG2485 MET2486 GLY2487 GLU2488 LYS2489 SER2490 ALA2491 GLN2492 ASN2493 LEU2494 LEU2495 ARG2496 GLN2497 ILE2498 GLU2499 GLU2500 SER2501 LYS2502 HIS2503 ARG2504 GLY2505 LEU2506 GLU2507 ARG2508 LEU2509 LEU2510 TYR2511 ALA2512 LEU2513 GLY2514 LEU2515 PRO2516 GLY2517 VAL2518 GLY2519 GLU2520 VAL2521 LEU2522 ALA2523 ARG2524 ASN2525 LEU2526 ALA2527 ARG2528 ARG2529 PHE2530 GLY2531 THR2532 MET2533 ASP2534 ARG2535 LEU2536 LEU2537 GLU2538 ALA2539 SER2540 LEU2541 GLU2542 GLU2543 LEU2544 LEU2545 GLU2546 VAL2547 GLU2548 GLU2549 VAL2550 GLY2551 GLU2552 LEU2553 THR2554 ALA2555 ARG2556 ALA2557 ILE2558 LEU2559 GLU2560 THR2561 LEU2562 LYS2563 ASP2564 PRO2565 ALA2566 PHE2567 ARG2568 ASP2569 LEU2570 VAL2571 ARG2572 ARG2573 LEU2574 LYS2575 GLU2576 ALA2577 GLY2578 VAL2579 SER2580 MET2581 GLU2582 SER2583 LYS2584
Ligands
Unit 3 AMP700 ZN701
Unit 4 AMP2700 ZN2701
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany