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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF NEURAMINIDASE FROM ENGLISH DUCK SUBTYPE N6
Keywords GLYCOSIDASE, HYDROLASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1V0Z     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NEURAMINIDASE  A 389 3009 0
2  Protein   NEURAMINIDASE  B 389 3009 0
3  Protein   NEURAMINIDASE  C 389 3009 0
4  Protein   NEURAMINIDASE  D 389 3009 0
5  Ligand    E 2 0 28
6  Ligand    F 4 0 47
7  Ligand    G 6 0 72
8  Ligand    H 3 0 36
9  Ligand    I 2 0 28
10  Ligand    J 2 0 22
11  Ligand   NEURAMINIDASE  A 9 0 93
12  Ligand   NEURAMINIDASE  B 6 0 57
13  Ligand   NEURAMINIDASE  C 6 0 56
14  Ligand   NEURAMINIDASE  D 7 0 74
15 Water     1798 0 1798
total       3401 12036 2311

Proteins
Unit 1 ARG88 THR89 PHE90 LEU91 ASN92 LEU93 THR94 LYS95 PRO96 LEU97 CYS98 GLU99 VAL100 ASN101 SER102 TRP103 HIS104 ILE105 LEU106 SER107 LYS108 ASP109 ASN110 ALA111 ILE112 ARG113 ILE114 GLY115 GLU116 ASP117 ALA118 HIS119 ILE120 LEU121 VAL122 THR123 ARG124 GLU125 PRO126 TYR127 LEU128 SER129 CYS130 ASP131 PRO132 GLN133 GLY134 CYS135 ARG136 MET137 PHE138 ALA139 LEU140 SER141 GLN142 GLY143 THR144 THR145 LEU146 ARG147 GLY148 ARG149 HIS150 ALA151 ASN152 GLY153 THR154 ILE155 HIS156 ASP157 ARG158 SER159 PRO160 PHE161 ARG162 ALA163 LEU164 ILE165 SER166 TRP167 GLU168 MET169 GLY170 GLN171 ALA172 PRO173 SER174 PRO175 TYR176 ASN177 THR178 ARG179 VAL180 GLU181 CYS182 ILE183 GLY184 TRP185 SER186 SER187 THR188 SER189 CYS190 HIS191 ASP192 GLY193 MET194 SER195 ARG196 MET197 SER198 ILE199 CYS200 MET201 SER202 GLY203 PRO204 ASN205 ASN206 ASN207 ALA208 SER209 ALA210 VAL211 VAL212 TRP213 TYR214 GLY215 GLY216 ARG217 PRO218 ILE219 THR220 GLU221 ILE222 PRO223 SER224 TRP225 ALA226 GLY227 ASN228 ILE229 LEU230 ARG231 THR232 GLN233 GLU234 SER235 GLU236 CYS237 VAL238 CYS239 HIS240 LYS241 GLY242 VAL243 CYS244 PRO245 VAL246 VAL247 MET248 THR249 ASP250 GLY251 PRO252 ALA253 ASN254 ASN255 ARG256 ALA257 ALA258 THR259 LYS260 ILE261 ILE262 TYR263 PHE264 LYS265 GLU266 GLY267 LYS268 ILE269 GLN270 LYS271 ILE272 GLU273 GLU274 LEU275 ALA276 GLY277 ASN278 ALA279 GLN280 HIS281 ILE282 GLU283 GLU284 CYS285 SER286 CYS287 TYR288 GLY289 ALA290 GLY291 GLY292 VAL293 ILE294 LYS295 CYS296 ILE297 CYS298 ARG299 ASP300 ASN301 TRP302 LYS303 GLY304 ALA305 ASN306 ARG307 PRO308 VAL309 ILE310 THR311 ILE312 ASP313 PRO314 GLU315 MET316 MET317 THR318 HIS319 THR320 SER321 LYS322 TYR323 LEU324 CYS325 SER326 LYS327 VAL328 LEU329 THR330 ASP331 THR332 SER333 ARG334 PRO335 ASN336 ASP337 PRO338 THR339 ASN340 GLY341 ASN342 CYS343 ASP344 ALA345 PRO346 ILE347 THR348 GLY349 GLY350 SER351 PRO352 ASP353 PRO354 GLY355 VAL356 LYS357 GLY358 PHE359 ALA360 PHE361 LEU362 ASP363 GLY364 GLU365 ASN366 SER367 TRP368 LEU369 GLY370 ARG371 THR372 ILE373 SER374 LYS375 ASP376 SER377 ARG378 SER379 GLY380 TYR381 GLU382 MET383 LEU384 LYS385 VAL386 PRO387 ASN388 ALA389 GLU390 THR391 ASP392 ILE393 GLN394 SER395 GLY396 PRO397 ILE398 SER399 ASN400 GLN401 VAL402 ILE403 VAL404 ASN405 ASN406 GLN407 ASN408 TRP409 SER410 GLY411 TYR412 SER413 GLY414 ALA415 PHE416 ILE417 ASP418 TYR419 TRP420 ALA421 ASN422 LYS423 GLU424 CYS425 PHE426 ASN427 PRO428 CYS429 PHE430 TYR431 VAL432 GLU433 LEU434 ILE435 ARG436 GLY437 ARG438 PRO439 LYS440 GLU441 SER442 SER443 VAL444 LEU445 TRP446 THR447 SER448 ASN449 SER450 ILE451 VAL452 ALA453 LEU454 CYS455 GLY456 SER457 LYS458 LYS459 ARG460 LEU461 GLY462 SER463 TRP464 SER465 TRP466 HIS467 ASP468 GLY469 ALA470 GLU471 ILE472 ILE473 TYR474 PHE475 GLU476
Unit 2 ARG88 THR89 PHE90 LEU91 ASN92 LEU93 THR94 LYS95 PRO96 LEU97 CYS98 GLU99 VAL100 ASN101 SER102 TRP103 HIS104 ILE105 LEU106 SER107 LYS108 ASP109 ASN110 ALA111 ILE112 ARG113 ILE114 GLY115 GLU116 ASP117 ALA118 HIS119 ILE120 LEU121 VAL122 THR123 ARG124 GLU125 PRO126 TYR127 LEU128 SER129 CYS130 ASP131 PRO132 GLN133 GLY134 CYS135 ARG136 MET137 PHE138 ALA139 LEU140 SER141 GLN142 GLY143 THR144 THR145 LEU146 ARG147 GLY148 ARG149 HIS150 ALA151 ASN152 GLY153 THR154 ILE155 HIS156 ASP157 ARG158 SER159 PRO160 PHE161 ARG162 ALA163 LEU164 ILE165 SER166 TRP167 GLU168 MET169 GLY170 GLN171 ALA172 PRO173 SER174 PRO175 TYR176 ASN177 THR178 ARG179 VAL180 GLU181 CYS182 ILE183 GLY184 TRP185 SER186 SER187 THR188 SER189 CYS190 HIS191 ASP192 GLY193 MET194 SER195 ARG196 MET197 SER198 ILE199 CYS200 MET201 SER202 GLY203 PRO204 ASN205 ASN206 ASN207 ALA208 SER209 ALA210 VAL211 VAL212 TRP213 TYR214 GLY215 GLY216 ARG217 PRO218 ILE219 THR220 GLU221 ILE222 PRO223 SER224 TRP225 ALA226 GLY227 ASN228 ILE229 LEU230 ARG231 THR232 GLN233 GLU234 SER235 GLU236 CYS237 VAL238 CYS239 HIS240 LYS241 GLY242 VAL243 CYS244 PRO245 VAL246 VAL247 MET248 THR249 ASP250 GLY251 PRO252 ALA253 ASN254 ASN255 ARG256 ALA257 ALA258 THR259 LYS260 ILE261 ILE262 TYR263 PHE264 LYS265 GLU266 GLY267 LYS268 ILE269 GLN270 LYS271 ILE272 GLU273 GLU274 LEU275 ALA276 GLY277 ASN278 ALA279 GLN280 HIS281 ILE282 GLU283 GLU284 CYS285 SER286 CYS287 TYR288 GLY289 ALA290 GLY291 GLY292 VAL293 ILE294 LYS295 CYS296 ILE297 CYS298 ARG299 ASP300 ASN301 TRP302 LYS303 GLY304 ALA305 ASN306 ARG307 PRO308 VAL309 ILE310 THR311 ILE312 ASP313 PRO314 GLU315 MET316 MET317 THR318 HIS319 THR320 SER321 LYS322 TYR323 LEU324 CYS325 SER326 LYS327 VAL328 LEU329 THR330 ASP331 THR332 SER333 ARG334 PRO335 ASN336 ASP337 PRO338 THR339 ASN340 GLY341 ASN342 CYS343 ASP344 ALA345 PRO346 ILE347 THR348 GLY349 GLY350 SER351 PRO352 ASP353 PRO354 GLY355 VAL356 LYS357 GLY358 PHE359 ALA360 PHE361 LEU362 ASP363 GLY364 GLU365 ASN366 SER367 TRP368 LEU369 GLY370 ARG371 THR372 ILE373 SER374 LYS375 ASP376 SER377 ARG378 SER379 GLY380 TYR381 GLU382 MET383 LEU384 LYS385 VAL386 PRO387 ASN388 ALA389 GLU390 THR391 ASP392 ILE393 GLN394 SER395 GLY396 PRO397 ILE398 SER399 ASN400 GLN401 VAL402 ILE403 VAL404 ASN405 ASN406 GLN407 ASN408 TRP409 SER410 GLY411 TYR412 SER413 GLY414 ALA415 PHE416 ILE417 ASP418 TYR419 TRP420 ALA421 ASN422 LYS423 GLU424 CYS425 PHE426 ASN427 PRO428 CYS429 PHE430 TYR431 VAL432 GLU433 LEU434 ILE435 ARG436 GLY437 ARG438 PRO439 LYS440 GLU441 SER442 SER443 VAL444 LEU445 TRP446 THR447 SER448 ASN449 SER450 ILE451 VAL452 ALA453 LEU454 CYS455 GLY456 SER457 LYS458 LYS459 ARG460 LEU461 GLY462 SER463 TRP464 SER465 TRP466 HIS467 ASP468 GLY469 ALA470 GLU471 ILE472 ILE473 TYR474 PHE475 GLU476
Unit 3 ARG88 THR89 PHE90 LEU91 ASN92 LEU93 THR94 LYS95 PRO96 LEU97 CYS98 GLU99 VAL100 ASN101 SER102 TRP103 HIS104 ILE105 LEU106 SER107 LYS108 ASP109 ASN110 ALA111 ILE112 ARG113 ILE114 GLY115 GLU116 ASP117 ALA118 HIS119 ILE120 LEU121 VAL122 THR123 ARG124 GLU125 PRO126 TYR127 LEU128 SER129 CYS130 ASP131 PRO132 GLN133 GLY134 CYS135 ARG136 MET137 PHE138 ALA139 LEU140 SER141 GLN142 GLY143 THR144 THR145 LEU146 ARG147 GLY148 ARG149 HIS150 ALA151 ASN152 GLY153 THR154 ILE155 HIS156 ASP157 ARG158 SER159 PRO160 PHE161 ARG162 ALA163 LEU164 ILE165 SER166 TRP167 GLU168 MET169 GLY170 GLN171 ALA172 PRO173 SER174 PRO175 TYR176 ASN177 THR178 ARG179 VAL180 GLU181 CYS182 ILE183 GLY184 TRP185 SER186 SER187 THR188 SER189 CYS190 HIS191 ASP192 GLY193 MET194 SER195 ARG196 MET197 SER198 ILE199 CYS200 MET201 SER202 GLY203 PRO204 ASN205 ASN206 ASN207 ALA208 SER209 ALA210 VAL211 VAL212 TRP213 TYR214 GLY215 GLY216 ARG217 PRO218 ILE219 THR220 GLU221 ILE222 PRO223 SER224 TRP225 ALA226 GLY227 ASN228 ILE229 LEU230 ARG231 THR232 GLN233 GLU234 SER235 GLU236 CYS237 VAL238 CYS239 HIS240 LYS241 GLY242 VAL243 CYS244 PRO245 VAL246 VAL247 MET248 THR249 ASP250 GLY251 PRO252 ALA253 ASN254 ASN255 ARG256 ALA257 ALA258 THR259 LYS260 ILE261 ILE262 TYR263 PHE264 LYS265 GLU266 GLY267 LYS268 ILE269 GLN270 LYS271 ILE272 GLU273 GLU274 LEU275 ALA276 GLY277 ASN278 ALA279 GLN280 HIS281 ILE282 GLU283 GLU284 CYS285 SER286 CYS287 TYR288 GLY289 ALA290 GLY291 GLY292 VAL293 ILE294 LYS295 CYS296 ILE297 CYS298 ARG299 ASP300 ASN301 TRP302 LYS303 GLY304 ALA305 ASN306 ARG307 PRO308 VAL309 ILE310 THR311 ILE312 ASP313 PRO314 GLU315 MET316 MET317 THR318 HIS319 THR320 SER321 LYS322 TYR323 LEU324 CYS325 SER326 LYS327 VAL328 LEU329 THR330 ASP331 THR332 SER333 ARG334 PRO335 ASN336 ASP337 PRO338 THR339 ASN340 GLY341 ASN342 CYS343 ASP344 ALA345 PRO346 ILE347 THR348 GLY349 GLY350 SER351 PRO352 ASP353 PRO354 GLY355 VAL356 LYS357 GLY358 PHE359 ALA360 PHE361 LEU362 ASP363 GLY364 GLU365 ASN366 SER367 TRP368 LEU369 GLY370 ARG371 THR372 ILE373 SER374 LYS375 ASP376 SER377 ARG378 SER379 GLY380 TYR381 GLU382 MET383 LEU384 LYS385 VAL386 PRO387 ASN388 ALA389 GLU390 THR391 ASP392 ILE393 GLN394 SER395 GLY396 PRO397 ILE398 SER399 ASN400 GLN401 VAL402 ILE403 VAL404 ASN405 ASN406 GLN407 ASN408 TRP409 SER410 GLY411 TYR412 SER413 GLY414 ALA415 PHE416 ILE417 ASP418 TYR419 TRP420 ALA421 ASN422 LYS423 GLU424 CYS425 PHE426 ASN427 PRO428 CYS429 PHE430 TYR431 VAL432 GLU433 LEU434 ILE435 ARG436 GLY437 ARG438 PRO439 LYS440 GLU441 SER442 SER443 VAL444 LEU445 TRP446 THR447 SER448 ASN449 SER450 ILE451 VAL452 ALA453 LEU454 CYS455 GLY456 SER457 LYS458 LYS459 ARG460 LEU461 GLY462 SER463 TRP464 SER465 TRP466 HIS467 ASP468 GLY469 ALA470 GLU471 ILE472 ILE473 TYR474 PHE475 GLU476
Unit 4 ARG88 THR89 PHE90 LEU91 ASN92 LEU93 THR94 LYS95 PRO96 LEU97 CYS98 GLU99 VAL100 ASN101 SER102 TRP103 HIS104 ILE105 LEU106 SER107 LYS108 ASP109 ASN110 ALA111 ILE112 ARG113 ILE114 GLY115 GLU116 ASP117 ALA118 HIS119 ILE120 LEU121 VAL122 THR123 ARG124 GLU125 PRO126 TYR127 LEU128 SER129 CYS130 ASP131 PRO132 GLN133 GLY134 CYS135 ARG136 MET137 PHE138 ALA139 LEU140 SER141 GLN142 GLY143 THR144 THR145 LEU146 ARG147 GLY148 ARG149 HIS150 ALA151 ASN152 GLY153 THR154 ILE155 HIS156 ASP157 ARG158 SER159 PRO160 PHE161 ARG162 ALA163 LEU164 ILE165 SER166 TRP167 GLU168 MET169 GLY170 GLN171 ALA172 PRO173 SER174 PRO175 TYR176 ASN177 THR178 ARG179 VAL180 GLU181 CYS182 ILE183 GLY184 TRP185 SER186 SER187 THR188 SER189 CYS190 HIS191 ASP192 GLY193 MET194 SER195 ARG196 MET197 SER198 ILE199 CYS200 MET201 SER202 GLY203 PRO204 ASN205 ASN206 ASN207 ALA208 SER209 ALA210 VAL211 VAL212 TRP213 TYR214 GLY215 GLY216 ARG217 PRO218 ILE219 THR220 GLU221 ILE222 PRO223 SER224 TRP225 ALA226 GLY227 ASN228 ILE229 LEU230 ARG231 THR232 GLN233 GLU234 SER235 GLU236 CYS237 VAL238 CYS239 HIS240 LYS241 GLY242 VAL243 CYS244 PRO245 VAL246 VAL247 MET248 THR249 ASP250 GLY251 PRO252 ALA253 ASN254 ASN255 ARG256 ALA257 ALA258 THR259 LYS260 ILE261 ILE262 TYR263 PHE264 LYS265 GLU266 GLY267 LYS268 ILE269 GLN270 LYS271 ILE272 GLU273 GLU274 LEU275 ALA276 GLY277 ASN278 ALA279 GLN280 HIS281 ILE282 GLU283 GLU284 CYS285 SER286 CYS287 TYR288 GLY289 ALA290 GLY291 GLY292 VAL293 ILE294 LYS295 CYS296 ILE297 CYS298 ARG299 ASP300 ASN301 TRP302 LYS303 GLY304 ALA305 ASN306 ARG307 PRO308 VAL309 ILE310 THR311 ILE312 ASP313 PRO314 GLU315 MET316 MET317 THR318 HIS319 THR320 SER321 LYS322 TYR323 LEU324 CYS325 SER326 LYS327 VAL328 LEU329 THR330 ASP331 THR332 SER333 ARG334 PRO335 ASN336 ASP337 PRO338 THR339 ASN340 GLY341 ASN342 CYS343 ASP344 ALA345 PRO346 ILE347 THR348 GLY349 GLY350 SER351 PRO352 ASP353 PRO354 GLY355 VAL356 LYS357 GLY358 PHE359 ALA360 PHE361 LEU362 ASP363 GLY364 GLU365 ASN366 SER367 TRP368 LEU369 GLY370 ARG371 THR372 ILE373 SER374 LYS375 ASP376 SER377 ARG378 SER379 GLY380 TYR381 GLU382 MET383 LEU384 LYS385 VAL386 PRO387 ASN388 ALA389 GLU390 THR391 ASP392 ILE393 GLN394 SER395 GLY396 PRO397 ILE398 SER399 ASN400 GLN401 VAL402 ILE403 VAL404 ASN405 ASN406 GLN407 ASN408 TRP409 SER410 GLY411 TYR412 SER413 GLY414 ALA415 PHE416 ILE417 ASP418 TYR419 TRP420 ALA421 ASN422 LYS423 GLU424 CYS425 PHE426 ASN427 PRO428 CYS429 PHE430 TYR431 VAL432 GLU433 LEU434 ILE435 ARG436 GLY437 ARG438 PRO439 LYS440 GLU441 SER442 SER443 VAL444 LEU445 TRP446 THR447 SER448 ASN449 SER450 ILE451 VAL452 ALA453 LEU454 CYS455 GLY456 SER457 LYS458 LYS459 ARG460 LEU461 GLY462 SER463 TRP464 SER465 TRP466 HIS467 ASP468 GLY469 ALA470 GLU471 ILE472 ILE473 TYR474 PHE475 GLU476

Ligands
Unit 5 NAG1 NAG2
Unit 6 NAG1 BMA2 MAN3 MAN4
Unit 7 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6
Unit 8 NAG1 BMA2 MAN3
Unit 9 NAG1 NAG2
Unit 10 BMA1 MAN2
Unit 11 CA501 GOL502 NAG505 NAG506 MAN508 MAN509 NAG513 MAN514 MAN521
Unit 12 CA501 GOL502 NAG503 NAG504 MAN506 MAN509
Unit 13 NAG501 CA502 PEG503 GOL504 NAG505 NAG506
Unit 14 NAG501 CA504 GOL505 NAG506 NAG507 NAG508 MAN509

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany