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Sequence, Chains, Asymmetric and Biological Units

Title BRANCHED-CHAIN 2-OXO ACID DEHYDROGENASE (E1) FROM THERMUS TH HB8 IN HOLO-FORM
Keywords ALPHA(2)BETA(2) TETRAMER, STRUCTURAL GENOMICS, RIKEN STRUCTU GENOMICS/PROTEOMICS INITIATIVE, RSGI, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1UMB     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   2-OXO ACID DEHYDROGENASE ALPHA SUBUNIT  A 362 2879 0
2  Protein   2-OXO ACID DEHYDROGENASE BETA SUBUNIT  B 323 2463 0
3  Protein   2-OXO ACID DEHYDROGENASE ALPHA SUBUNIT  C 361 2870 0
4  Protein   2-OXO ACID DEHYDROGENASE BETA SUBUNIT  D 323 2463 0
5  Ligand   2-OXO ACID DEHYDROGENASE ALPHA SUBUNIT  A 2 0 27
6  Ligand   2-OXO ACID DEHYDROGENASE ALPHA SUBUNIT  C 2 0 27
7 Water     1164 0 1164
total       2537 10675 1218

Proteins
Unit 1 HIS6 ARG7 PHE8 GLU9 THR10 PHE11 THR12 GLU13 GLU14 PRO15 ILE16 ARG17 LEU18 ILE19 GLY20 GLU21 GLU22 GLY23 GLU24 TRP25 LEU26 GLY27 ASP28 PHE29 PRO30 LEU31 ASP32 LEU33 GLU34 GLY35 GLU36 LYS37 LEU38 ARG39 ARG40 LEU41 TYR42 ARG43 ASP44 MET45 LEU46 ALA47 ALA48 ARG49 MET50 LEU51 ASP52 GLU53 ARG54 TYR55 THR56 ILE57 LEU58 ILE59 ARG60 THR61 GLY62 LYS63 THR64 SER65 PHE66 ILE67 ALA68 PRO69 ALA70 ALA71 GLY72 HIS73 GLU74 ALA75 ALA76 GLN77 VAL78 ALA79 ILE80 ALA81 HIS82 ALA83 ILE84 ARG85 PRO86 GLY87 PHE88 ASP89 TRP90 VAL91 PHE92 PRO93 TYR94 TYR95 ARG96 ASP97 HIS98 GLY99 LEU100 ALA101 LEU102 ALA103 LEU104 GLY105 ILE106 PRO107 LEU108 LYS109 GLU110 LEU111 LEU112 GLY113 GLN114 MET115 LEU116 ALA117 THR118 LYS119 ALA120 ASP121 PRO122 ASN123 LYS124 GLY125 ARG126 GLN127 MET128 PRO129 GLU130 HIS131 PRO132 GLY133 SER134 LYS135 ALA136 LEU137 ASN138 PHE139 PHE140 THR141 VAL142 ALA143 SER144 PRO145 ILE146 ALA147 SER148 HIS149 VAL150 PRO151 PRO152 ALA153 ALA154 GLY155 ALA156 ALA157 ILE158 SER159 MET160 LYS161 LEU162 LEU163 ARG164 THR165 GLY166 GLN167 VAL168 ALA169 VAL170 CYS171 THR172 PHE173 GLY174 ASP175 GLY176 ALA177 THR178 SER179 GLU180 GLY181 ASP182 TRP183 TYR184 ALA185 GLY186 ILE187 ASN188 PHE189 ALA190 ALA191 VAL192 GLN193 GLY194 ALA195 PRO196 ALA197 VAL198 PHE199 ILE200 ALA201 GLU202 ASN203 ASN204 PHE205 TYR206 ALA207 ILE208 SER209 VAL210 ASP211 TYR212 ARG213 HIS214 GLN215 THR216 HIS217 SER218 PRO219 THR220 ILE221 ALA222 ASP223 LYS224 ALA225 HIS226 ALA227 PHE228 GLY229 ILE230 PRO231 GLY232 TYR233 LEU234 VAL235 ASP236 GLY237 MET238 ASP239 VAL240 LEU241 ALA242 SER243 TYR244 TYR245 VAL246 VAL247 LYS248 GLU249 ALA250 VAL251 GLU252 ARG253 ALA254 ARG255 ARG256 GLY257 GLU258 GLY259 PRO260 SER261 LEU262 VAL263 GLU264 LEU265 ARG266 VAL267 TYR268 ARG269 TYR270 GLY271 PRO272 HIS273 SER274 SER275 ALA276 ASP277 ASP278 ASP279 SER280 ARG281 TYR282 ARG283 PRO284 LYS285 GLU286 GLU287 VAL288 ALA289 PHE290 TRP291 ARG292 LYS293 LYS294 ASP295 PRO296 ILE297 PRO298 ARG299 PHE300 ARG301 ARG302 PHE303 LEU304 GLU305 ALA306 ARG307 GLY308 LEU309 TRP310 ASN311 GLU312 GLU313 TRP314 GLU315 GLU316 ASP317 VAL318 ARG319 GLU320 GLU321 ILE322 ARG323 ALA324 GLU325 LEU326 GLU327 ARG328 GLY329 LEU330 LYS331 GLU332 ALA333 GLU334 GLU335 ALA336 GLY337 PRO338 VAL339 PRO340 PRO341 GLU342 TRP343 MET344 PHE345 GLU346 ASP347 VAL348 PHE349 ALA350 GLU351 LYS352 PRO353 TRP354 HIS355 LEU356 LEU357 ARG358 GLN359 GLU360 ALA361 LEU362 LEU363 LYS364 GLU365 GLU366 LEU367
Unit 2 ALA2 LEU3 MET4 THR5 MET6 VAL7 GLN8 ALA9 LEU10 ASN11 ARG12 ALA13 LEU14 ASP15 GLU16 GLU17 MET18 ALA19 LYS20 ASP21 PRO22 ARG23 VAL24 VAL25 VAL26 LEU27 GLY28 GLU29 ASP30 VAL31 GLY32 LYS33 ARG34 GLY35 GLY36 VAL37 PHE38 LEU39 VAL40 THR41 GLU42 GLY43 LEU44 LEU45 GLN46 LYS47 TYR48 GLY49 PRO50 ASP51 ARG52 VAL53 MET54 ASP55 THR56 PRO57 LEU58 SER59 GLU60 ALA61 ALA62 ILE63 VAL64 GLY65 ALA66 ALA67 LEU68 GLY69 MET70 ALA71 ALA72 HIS73 GLY74 LEU75 ARG76 PRO77 VAL78 ALA79 GLU80 ILE81 GLN82 PHE83 ALA84 ASP85 TYR86 ILE87 PHE88 PRO89 GLY90 PHE91 ASP92 GLN93 LEU94 VAL95 SER96 GLN97 VAL98 ALA99 LYS100 LEU101 ARG102 TYR103 ARG104 SER105 GLY106 GLY107 GLN108 PHE109 THR110 ALA111 PRO112 LEU113 VAL114 VAL115 ARG116 MET117 PRO118 SER119 GLY120 GLY121 GLY122 VAL123 ARG124 GLY125 GLY126 HIS127 HIS128 HIS129 SER130 GLN131 SER132 PRO133 GLU134 ALA135 HIS136 PHE137 VAL138 HIS139 THR140 ALA141 GLY142 LEU143 LYS144 VAL145 VAL146 ALA147 VAL148 SER149 THR150 PRO151 TYR152 ASP153 ALA154 LYS155 GLY156 LEU157 LEU158 LYS159 ALA160 ALA161 ILE162 ARG163 ASP164 GLU165 ASP166 PRO167 VAL168 VAL169 PHE170 LEU171 GLU172 PRO173 LYS174 ARG175 LEU176 TYR177 ARG178 SER179 VAL180 LYS181 GLU182 GLU183 VAL184 PRO185 GLU186 GLU187 ASP188 TYR189 THR190 LEU191 PRO192 ILE193 GLY194 LYS195 ALA196 ALA197 LEU198 ARG199 ARG200 GLU201 GLY202 LYS203 ASP204 LEU205 THR206 LEU207 ILE208 CYS209 TYR210 GLY211 THR212 VAL213 MET214 PRO215 GLU216 VAL217 LEU218 GLN219 ALA220 ALA221 ALA222 GLU223 LEU224 ALA225 LYS226 ALA227 GLY228 VAL229 SER230 ALA231 GLU232 VAL233 LEU234 ASP235 LEU236 ARG237 THR238 LEU239 MET240 PRO241 TRP242 ASP243 TYR244 GLU245 ALA246 VAL247 MET248 ASN249 SER250 VAL251 ALA252 LYS253 THR254 GLY255 ARG256 VAL257 VAL258 LEU259 VAL260 SER261 ASP262 ALA263 PRO264 ARG265 HIS266 ALA267 SER268 PHE269 VAL270 SER271 GLU272 VAL273 ALA274 ALA275 THR276 ILE277 ALA278 GLU279 ASP280 LEU281 LEU282 ASP283 MET284 LEU285 LEU286 ALA287 PRO288 PRO289 ILE290 ARG291 VAL292 THR293 GLY294 PHE295 ASP296 THR297 PRO298 TYR299 PRO300 TYR301 ALA302 GLN303 ASP304 LYS305 LEU306 TYR307 LEU308 PRO309 THR310 VAL311 THR312 ARG313 ILE314 LEU315 ASN316 ALA317 ALA318 LYS319 ARG320 ALA321 LEU322 ASP323 TYR324
Unit 3 HIS6 ARG7 PHE8 GLU9 THR10 PHE11 THR12 GLU13 GLU14 PRO15 ILE16 ARG17 LEU18 ILE19 GLY20 GLU21 GLU22 GLY23 GLU24 TRP25 LEU26 GLY27 ASP28 PHE29 PRO30 LEU31 ASP32 LEU33 GLU34 GLY35 GLU36 LYS37 LEU38 ARG39 ARG40 LEU41 TYR42 ARG43 ASP44 MET45 LEU46 ALA47 ALA48 ARG49 MET50 LEU51 ASP52 GLU53 ARG54 TYR55 THR56 ILE57 LEU58 ILE59 ARG60 THR61 GLY62 LYS63 THR64 SER65 PHE66 ILE67 ALA68 PRO69 ALA70 ALA71 GLY72 HIS73 GLU74 ALA75 ALA76 GLN77 VAL78 ALA79 ILE80 ALA81 HIS82 ALA83 ILE84 ARG85 PRO86 GLY87 PHE88 ASP89 TRP90 VAL91 PHE92 PRO93 TYR94 TYR95 ARG96 ASP97 HIS98 GLY99 LEU100 ALA101 LEU102 ALA103 LEU104 GLY105 ILE106 PRO107 LEU108 LYS109 GLU110 LEU111 LEU112 GLY113 GLN114 MET115 LEU116 ALA117 THR118 LYS119 ALA120 ASP121 PRO122 ASN123 LYS124 GLY125 ARG126 GLN127 MET128 PRO129 GLU130 HIS131 PRO132 GLY133 SER134 LYS135 ALA136 LEU137 ASN138 PHE139 PHE140 THR141 VAL142 ALA143 SER144 PRO145 ILE146 ALA147 SER148 HIS149 VAL150 PRO151 PRO152 ALA153 ALA154 GLY155 ALA156 ALA157 ILE158 SER159 MET160 LYS161 LEU162 LEU163 ARG164 THR165 GLY166 GLN167 VAL168 ALA169 VAL170 CYS171 THR172 PHE173 GLY174 ASP175 GLY176 ALA177 THR178 SER179 GLU180 GLY181 ASP182 TRP183 TYR184 ALA185 GLY186 ILE187 ASN188 PHE189 ALA190 ALA191 VAL192 GLN193 GLY194 ALA195 PRO196 ALA197 VAL198 PHE199 ILE200 ALA201 GLU202 ASN203 ASN204 PHE205 TYR206 ALA207 ILE208 SER209 VAL210 ASP211 TYR212 ARG213 HIS214 GLN215 THR216 HIS217 SER218 PRO219 THR220 ILE221 ALA222 ASP223 LYS224 ALA225 HIS226 ALA227 PHE228 GLY229 ILE230 PRO231 GLY232 TYR233 LEU234 VAL235 ASP236 GLY237 MET238 ASP239 VAL240 LEU241 ALA242 SER243 TYR244 TYR245 VAL246 VAL247 LYS248 GLU249 ALA250 VAL251 GLU252 ARG253 ALA254 ARG255 ARG256 GLY257 GLU258 GLY259 PRO260 SER261 LEU262 VAL263 GLU264 LEU265 ARG266 VAL267 TYR268 ARG269 TYR270 GLY271 PRO272 HIS273 SER274 SER275 ALA276 ASP277 ASP278 ASP279 SER280 ARG281 TYR282 ARG283 PRO284 LYS285 GLU286 GLU287 VAL288 ALA289 PHE290 TRP291 ARG292 LYS293 LYS294 ASP295 PRO296 ILE297 PRO298 ARG299 PHE300 ARG301 ARG302 PHE303 LEU304 GLU305 ALA306 ARG307 GLY308 LEU309 TRP310 ASN311 GLU312 GLU313 TRP314 GLU315 GLU316 ASP317 VAL318 ARG319 GLU320 GLU321 ILE322 ARG323 ALA324 GLU325 LEU326 GLU327 ARG328 GLY329 LEU330 LYS331 GLU332 ALA333 GLU334 GLU335 ALA336 GLY337 PRO338 VAL339 PRO340 PRO341 GLU342 TRP343 MET344 PHE345 GLU346 ASP347 VAL348 PHE349 ALA350 GLU351 LYS352 PRO353 TRP354 HIS355 LEU356 LEU357 ARG358 GLN359 GLU360 ALA361 LEU362 LEU363 LYS364 GLU365 GLU366
Unit 4 ALA2 LEU3 MET4 THR5 MET6 VAL7 GLN8 ALA9 LEU10 ASN11 ARG12 ALA13 LEU14 ASP15 GLU16 GLU17 MET18 ALA19 LYS20 ASP21 PRO22 ARG23 VAL24 VAL25 VAL26 LEU27 GLY28 GLU29 ASP30 VAL31 GLY32 LYS33 ARG34 GLY35 GLY36 VAL37 PHE38 LEU39 VAL40 THR41 GLU42 GLY43 LEU44 LEU45 GLN46 LYS47 TYR48 GLY49 PRO50 ASP51 ARG52 VAL53 MET54 ASP55 THR56 PRO57 LEU58 SER59 GLU60 ALA61 ALA62 ILE63 VAL64 GLY65 ALA66 ALA67 LEU68 GLY69 MET70 ALA71 ALA72 HIS73 GLY74 LEU75 ARG76 PRO77 VAL78 ALA79 GLU80 ILE81 GLN82 PHE83 ALA84 ASP85 TYR86 ILE87 PHE88 PRO89 GLY90 PHE91 ASP92 GLN93 LEU94 VAL95 SER96 GLN97 VAL98 ALA99 LYS100 LEU101 ARG102 TYR103 ARG104 SER105 GLY106 GLY107 GLN108 PHE109 THR110 ALA111 PRO112 LEU113 VAL114 VAL115 ARG116 MET117 PRO118 SER119 GLY120 GLY121 GLY122 VAL123 ARG124 GLY125 GLY126 HIS127 HIS128 HIS129 SER130 GLN131 SER132 PRO133 GLU134 ALA135 HIS136 PHE137 VAL138 HIS139 THR140 ALA141 GLY142 LEU143 LYS144 VAL145 VAL146 ALA147 VAL148 SER149 THR150 PRO151 TYR152 ASP153 ALA154 LYS155 GLY156 LEU157 LEU158 LYS159 ALA160 ALA161 ILE162 ARG163 ASP164 GLU165 ASP166 PRO167 VAL168 VAL169 PHE170 LEU171 GLU172 PRO173 LYS174 ARG175 LEU176 TYR177 ARG178 SER179 VAL180 LYS181 GLU182 GLU183 VAL184 PRO185 GLU186 GLU187 ASP188 TYR189 THR190 LEU191 PRO192 ILE193 GLY194 LYS195 ALA196 ALA197 LEU198 ARG199 ARG200 GLU201 GLY202 LYS203 ASP204 LEU205 THR206 LEU207 ILE208 CYS209 TYR210 GLY211 THR212 VAL213 MET214 PRO215 GLU216 VAL217 LEU218 GLN219 ALA220 ALA221 ALA222 GLU223 LEU224 ALA225 LYS226 ALA227 GLY228 VAL229 SER230 ALA231 GLU232 VAL233 LEU234 ASP235 LEU236 ARG237 THR238 LEU239 MET240 PRO241 TRP242 ASP243 TYR244 GLU245 ALA246 VAL247 MET248 ASN249 SER250 VAL251 ALA252 LYS253 THR254 GLY255 ARG256 VAL257 VAL258 LEU259 VAL260 SER261 ASP262 ALA263 PRO264 ARG265 HIS266 ALA267 SER268 PHE269 VAL270 SER271 GLU272 VAL273 ALA274 ALA275 THR276 ILE277 ALA278 GLU279 ASP280 LEU281 LEU282 ASP283 MET284 LEU285 LEU286 ALA287 PRO288 PRO289 ILE290 ARG291 VAL292 THR293 GLY294 PHE295 ASP296 THR297 PRO298 TYR299 PRO300 TYR301 ALA302 GLN303 ASP304 LYS305 LEU306 TYR307 LEU308 PRO309 THR310 VAL311 THR312 ARG313 ILE314 LEU315 ASN316 ALA317 ALA318 LYS319 ARG320 ALA321 LEU322 ASP323 TYR324

Ligands
Unit 5 MG1401 TPP1402
Unit 6 MG2401 TPP2402

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany