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Sequence, Chains, Asymmetric and Biological Units

Title RNA APTAMER COMPLEXED WITH HIV-1 REV PEPTIDE, NMR, 7 STRUCTURES
Keywords REV PEPTIDE-RNA RECOGNITION, ALPHA-HELIX IN WIDENED RNA MAJOR GROOVE, PURINE-PURINE MISMATCHES, UAU BASE TRIPLE, ADAPTIVE BINDING OF PEPTIDE AND RNA IN COMPLEX, COMPLEX (RNA APTAMER/REV PEPTIDE), VIRAL PROTEIN/RNA COMPLEX
Experiment NMR
Number of Models  7


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1ULL     released     available     available     Quaternary Structure Server  
NDB   1ULL                         


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 35 1121 0
2  Protein   REV PEPTIDE  B 17 351 0
total       52 1472 0

Proteins
Unit 2 THR1 ARG2 GLN3 ALA4 ARG5 ARG6 ASN7 ARG8 ARG9 ARG10 ARG11 TRP12 ARG13 GLU14 ARG15 GLN16 ARG17

Nucleic acids
Unit 1 G1 G2 C3 U4 G5 G6 A7 C8 U9 C10 G11 U12 A13 C14 U15 U16 C17 G18 G19 U20 A21 C22 U23 G24 G25 A26 G27 A28 A29 A30 C31 A32 G33 C34 C35

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany