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Sequence, Chains, Asymmetric and Biological Units

Title DETAILED STRUCTURE OF L-METHIONINE-LYASE FROM PSEUDOMONAS PUTIDA
Keywords PYRIDOXAL PHOSPHATE, PSEUDOMONAS PUTIDA, METHIONINE, LYASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1UKJ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   METHIONINE GAMMA-LYASE  A 398 2987 24
2  Protein   METHIONINE GAMMA-LYASE  B 398 2987 24
3  Protein   METHIONINE GAMMA-LYASE  C 398 2987 24
4  Protein   METHIONINE GAMMA-LYASE  D 398 2987 24
5  Ligand   METHIONINE GAMMA-LYASE  A 1 0 5
6  Ligand   METHIONINE GAMMA-LYASE  B 2 0 10
7  Ligand   METHIONINE GAMMA-LYASE  C 1 0 5
8  Ligand   METHIONINE GAMMA-LYASE  D 1 0 5
9 Water     1079 0 1079
total       2676 11948 1200

Proteins
Unit 1 MET1 HIS2 GLY3 SER4 ASN5 LYS6 LEU7 PRO8 GLY9 PHE10 ALA11 THR12 ARG13 ALA14 ILE15 HIS16 HIS17 GLY18 TYR19 ASP20 PRO21 GLN22 ASP23 HIS24 GLY25 GLY26 ALA27 LEU28 VAL29 PRO30 PRO31 VAL32 TYR33 GLN34 THR35 ALA36 THR37 PHE38 THR39 PHE40 PRO41 THR42 VAL43 GLU44 TYR45 GLY46 ALA47 ALA48 CYS49 PHE50 ALA51 GLY52 GLU53 GLN54 ALA55 GLY56 HIS57 PHE58 TYR59 SER60 ARG61 ILE62 SER63 ASN64 PRO65 THR66 LEU67 ASN68 LEU69 LEU70 GLU71 ALA72 ARG73 MET74 ALA75 SER76 LEU77 GLU78 GLY79 GLY80 GLU81 ALA82 GLY83 LEU84 ALA85 LEU86 ALA87 SER88 GLY89 MET90 GLY91 ALA92 ILE93 THR94 SER95 THR96 LEU97 TRP98 THR99 LEU100 LEU101 ARG102 PRO103 GLY104 ASP105 GLU106 VAL107 LEU108 LEU109 GLY110 ASN111 THR112 LEU113 TYR114 GLY115 CYS116 THR117 PHE118 ALA119 PHE120 LEU121 HIS122 HIS123 GLY124 ILE125 GLY126 GLU127 PHE128 GLY129 VAL130 LYS131 LEU132 ARG133 HIS134 VAL135 ASP136 MET137 ALA138 ASP139 LEU140 GLN141 ALA142 LEU143 GLU144 ALA145 ALA146 MET147 THR148 PRO149 ALA150 THR151 ARG152 VAL153 ILE154 TYR155 PHE156 GLU157 SER158 PRO159 ALA160 ASN161 PRO162 ASN163 MET164 HIS165 MET166 ALA167 ASP168 ILE169 ALA170 GLY171 VAL172 ALA173 LYS174 ILE175 ALA176 ARG177 LYS178 HIS179 GLY180 ALA181 THR182 VAL183 VAL184 VAL185 ASP186 ASN187 THR188 TYR189 CYS190 THR191 PRO192 TYR193 LEU194 GLN195 ARG196 PRO197 LEU198 GLU199 LEU200 GLY201 ALA202 ASP203 LEU204 VAL205 VAL206 HIS207 SER208 ALA209 THR210 LLP211 TYR212 LEU213 SER214 GLY215 HIS216 GLY217 ASP218 ILE219 THR220 ALA221 GLY222 ILE223 VAL224 VAL225 GLY226 SER227 GLN228 ALA229 LEU230 VAL231 ASP232 ARG233 ILE234 ARG235 LEU236 GLN237 GLY238 LEU239 LYS240 ASP241 MET242 THR243 GLY244 ALA245 VAL246 LEU247 SER248 PRO249 HIS250 ASP251 ALA252 ALA253 LEU254 LEU255 MET256 ARG257 GLY258 ILE259 LYS260 THR261 LEU262 ASN263 LEU264 ARG265 MET266 ASP267 ARG268 HIS269 CYS270 ALA271 ASN272 ALA273 GLN274 VAL275 LEU276 ALA277 GLU278 PHE279 LEU280 ALA281 ARG282 GLN283 PRO284 GLN285 VAL286 GLU287 LEU288 ILE289 HIS290 TYR291 PRO292 GLY293 LEU294 ALA295 SER296 PHE297 PRO298 GLN299 TYR300 THR301 LEU302 ALA303 ARG304 GLN305 GLN306 MET307 SER308 GLN309 PRO310 GLY311 GLY312 MET313 ILE314 ALA315 PHE316 GLU317 LEU318 LYS319 GLY320 GLY321 ILE322 GLY323 ALA324 GLY325 ARG326 ARG327 PHE328 MET329 ASN330 ALA331 LEU332 GLN333 LEU334 PHE335 SER336 ARG337 ALA338 VAL339 SER340 LEU341 GLY342 ASP343 ALA344 GLU345 SER346 LEU347 ALA348 GLN349 HIS350 PRO351 ALA352 SER353 MET354 THR355 HIS356 SER357 SER358 TYR359 THR360 PRO361 GLU362 GLU363 ARG364 ALA365 HIS366 TYR367 GLY368 ILE369 SER370 GLU371 GLY372 LEU373 VAL374 ARG375 LEU376 SER377 VAL378 GLY379 LEU380 GLU381 ASP382 ILE383 ASP384 ASP385 LEU386 LEU387 ALA388 ASP389 VAL390 GLN391 GLN392 ALA393 LEU394 LYS395 ALA396 SER397 ALA398
Unit 2 MET501 HIS502 GLY503 SER504 ASN505 LYS506 LEU507 PRO508 GLY509 PHE510 ALA511 THR512 ARG513 ALA514 ILE515 HIS516 HIS517 GLY518 TYR519 ASP520 PRO521 GLN522 ASP523 HIS524 GLY525 GLY526 ALA527 LEU528 VAL529 PRO530 PRO531 VAL532 TYR533 GLN534 THR535 ALA536 THR537 PHE538 THR539 PHE540 PRO541 THR542 VAL543 GLU544 TYR545 GLY546 ALA547 ALA548 CYS549 PHE550 ALA551 GLY552 GLU553 GLN554 ALA555 GLY556 HIS557 PHE558 TYR559 SER560 ARG561 ILE562 SER563 ASN564 PRO565 THR566 LEU567 ASN568 LEU569 LEU570 GLU571 ALA572 ARG573 MET574 ALA575 SER576 LEU577 GLU578 GLY579 GLY580 GLU581 ALA582 GLY583 LEU584 ALA585 LEU586 ALA587 SER588 GLY589 MET590 GLY591 ALA592 ILE593 THR594 SER595 THR596 LEU597 TRP598 THR599 LEU600 LEU601 ARG602 PRO603 GLY604 ASP605 GLU606 VAL607 LEU608 LEU609 GLY610 ASN611 THR612 LEU613 TYR614 GLY615 CYS616 THR617 PHE618 ALA619 PHE620 LEU621 HIS622 HIS623 GLY624 ILE625 GLY626 GLU627 PHE628 GLY629 VAL630 LYS631 LEU632 ARG633 HIS634 VAL635 ASP636 MET637 ALA638 ASP639 LEU640 GLN641 ALA642 LEU643 GLU644 ALA645 ALA646 MET647 THR648 PRO649 ALA650 THR651 ARG652 VAL653 ILE654 TYR655 PHE656 GLU657 SER658 PRO659 ALA660 ASN661 PRO662 ASN663 MET664 HIS665 MET666 ALA667 ASP668 ILE669 ALA670 GLY671 VAL672 ALA673 LYS674 ILE675 ALA676 ARG677 LYS678 HIS679 GLY680 ALA681 THR682 VAL683 VAL684 VAL685 ASP686 ASN687 THR688 TYR689 CYS690 THR691 PRO692 TYR693 LEU694 GLN695 ARG696 PRO697 LEU698 GLU699 LEU700 GLY701 ALA702 ASP703 LEU704 VAL705 VAL706 HIS707 SER708 ALA709 THR710 LLP711 TYR712 LEU713 SER714 GLY715 HIS716 GLY717 ASP718 ILE719 THR720 ALA721 GLY722 ILE723 VAL724 VAL725 GLY726 SER727 GLN728 ALA729 LEU730 VAL731 ASP732 ARG733 ILE734 ARG735 LEU736 GLN737 GLY738 LEU739 LYS740 ASP741 MET742 THR743 GLY744 ALA745 VAL746 LEU747 SER748 PRO749 HIS750 ASP751 ALA752 ALA753 LEU754 LEU755 MET756 ARG757 GLY758 ILE759 LYS760 THR761 LEU762 ASN763 LEU764 ARG765 MET766 ASP767 ARG768 HIS769 CYS770 ALA771 ASN772 ALA773 GLN774 VAL775 LEU776 ALA777 GLU778 PHE779 LEU780 ALA781 ARG782 GLN783 PRO784 GLN785 VAL786 GLU787 LEU788 ILE789 HIS790 TYR791 PRO792 GLY793 LEU794 ALA795 SER796 PHE797 PRO798 GLN799 TYR800 THR801 LEU802 ALA803 ARG804 GLN805 GLN806 MET807 SER808 GLN809 PRO810 GLY811 GLY812 MET813 ILE814 ALA815 PHE816 GLU817 LEU818 LYS819 GLY820 GLY821 ILE822 GLY823 ALA824 GLY825 ARG826 ARG827 PHE828 MET829 ASN830 ALA831 LEU832 GLN833 LEU834 PHE835 SER836 ARG837 ALA838 VAL839 SER840 LEU841 GLY842 ASP843 ALA844 GLU845 SER846 LEU847 ALA848 GLN849 HIS850 PRO851 ALA852 SER853 MET854 THR855 HIS856 SER857 SER858 TYR859 THR860 PRO861 GLU862 GLU863 ARG864 ALA865 HIS866 TYR867 GLY868 ILE869 SER870 GLU871 GLY872 LEU873 VAL874 ARG875 LEU876 SER877 VAL878 GLY879 LEU880 GLU881 ASP882 ILE883 ASP884 ASP885 LEU886 LEU887 ALA888 ASP889 VAL890 GLN891 GLN892 ALA893 LEU894 LYS895 ALA896 SER897 ALA898
Unit 3 MET1001 HIS1002 GLY1003 SER1004 ASN1005 LYS1006 LEU1007 PRO1008 GLY1009 PHE1010 ALA1011 THR1012 ARG1013 ALA1014 ILE1015 HIS1016 HIS1017 GLY1018 TYR1019 ASP1020 PRO1021 GLN1022 ASP1023 HIS1024 GLY1025 GLY1026 ALA1027 LEU1028 VAL1029 PRO1030 PRO1031 VAL1032 TYR1033 GLN1034 THR1035 ALA1036 THR1037 PHE1038 THR1039 PHE1040 PRO1041 THR1042 VAL1043 GLU1044 TYR1045 GLY1046 ALA1047 ALA1048 CYS1049 PHE1050 ALA1051 GLY1052 GLU1053 GLN1054 ALA1055 GLY1056 HIS1057 PHE1058 TYR1059 SER1060 ARG1061 ILE1062 SER1063 ASN1064 PRO1065 THR1066 LEU1067 ASN1068 LEU1069 LEU1070 GLU1071 ALA1072 ARG1073 MET1074 ALA1075 SER1076 LEU1077 GLU1078 GLY1079 GLY1080 GLU1081 ALA1082 GLY1083 LEU1084 ALA1085 LEU1086 ALA1087 SER1088 GLY1089 MET1090 GLY1091 ALA1092 ILE1093 THR1094 SER1095 THR1096 LEU1097 TRP1098 THR1099 LEU1100 LEU1101 ARG1102 PRO1103 GLY1104 ASP1105 GLU1106 VAL1107 LEU1108 LEU1109 GLY1110 ASN1111 THR1112 LEU1113 TYR1114 GLY1115 CYS1116 THR1117 PHE1118 ALA1119 PHE1120 LEU1121 HIS1122 HIS1123 GLY1124 ILE1125 GLY1126 GLU1127 PHE1128 GLY1129 VAL1130 LYS1131 LEU1132 ARG1133 HIS1134 VAL1135 ASP1136 MET1137 ALA1138 ASP1139 LEU1140 GLN1141 ALA1142 LEU1143 GLU1144 ALA1145 ALA1146 MET1147 THR1148 PRO1149 ALA1150 THR1151 ARG1152 VAL1153 ILE1154 TYR1155 PHE1156 GLU1157 SER1158 PRO1159 ALA1160 ASN1161 PRO1162 ASN1163 MET1164 HIS1165 MET1166 ALA1167 ASP1168 ILE1169 ALA1170 GLY1171 VAL1172 ALA1173 LYS1174 ILE1175 ALA1176 ARG1177 LYS1178 HIS1179 GLY1180 ALA1181 THR1182 VAL1183 VAL1184 VAL1185 ASP1186 ASN1187 THR1188 TYR1189 CYS1190 THR1191 PRO1192 TYR1193 LEU1194 GLN1195 ARG1196 PRO1197 LEU1198 GLU1199 LEU1200 GLY1201 ALA1202 ASP1203 LEU1204 VAL1205 VAL1206 HIS1207 SER1208 ALA1209 THR1210 LLP1211 TYR1212 LEU1213 SER1214 GLY1215 HIS1216 GLY1217 ASP1218 ILE1219 THR1220 ALA1221 GLY1222 ILE1223 VAL1224 VAL1225 GLY1226 SER1227 GLN1228 ALA1229 LEU1230 VAL1231 ASP1232 ARG1233 ILE1234 ARG1235 LEU1236 GLN1237 GLY1238 LEU1239 LYS1240 ASP1241 MET1242 THR1243 GLY1244 ALA1245 VAL1246 LEU1247 SER1248 PRO1249 HIS1250 ASP1251 ALA1252 ALA1253 LEU1254 LEU1255 MET1256 ARG1257 GLY1258 ILE1259 LYS1260 THR1261 LEU1262 ASN1263 LEU1264 ARG1265 MET1266 ASP1267 ARG1268 HIS1269 CYS1270 ALA1271 ASN1272 ALA1273 GLN1274 VAL1275 LEU1276 ALA1277 GLU1278 PHE1279 LEU1280 ALA1281 ARG1282 GLN1283 PRO1284 GLN1285 VAL1286 GLU1287 LEU1288 ILE1289 HIS1290 TYR1291 PRO1292 GLY1293 LEU1294 ALA1295 SER1296 PHE1297 PRO1298 GLN1299 TYR1300 THR1301 LEU1302 ALA1303 ARG1304 GLN1305 GLN1306 MET1307 SER1308 GLN1309 PRO1310 GLY1311 GLY1312 MET1313 ILE1314 ALA1315 PHE1316 GLU1317 LEU1318 LYS1319 GLY1320 GLY1321 ILE1322 GLY1323 ALA1324 GLY1325 ARG1326 ARG1327 PHE1328 MET1329 ASN1330 ALA1331 LEU1332 GLN1333 LEU1334 PHE1335 SER1336 ARG1337 ALA1338 VAL1339 SER1340 LEU1341 GLY1342 ASP1343 ALA1344 GLU1345 SER1346 LEU1347 ALA1348 GLN1349 HIS1350 PRO1351 ALA1352 SER1353 MET1354 THR1355 HIS1356 SER1357 SER1358 TYR1359 THR1360 PRO1361 GLU1362 GLU1363 ARG1364 ALA1365 HIS1366 TYR1367 GLY1368 ILE1369 SER1370 GLU1371 GLY1372 LEU1373 VAL1374 ARG1375 LEU1376 SER1377 VAL1378 GLY1379 LEU1380 GLU1381 ASP1382 ILE1383 ASP1384 ASP1385 LEU1386 LEU1387 ALA1388 ASP1389 VAL1390 GLN1391 GLN1392 ALA1393 LEU1394 LYS1395 ALA1396 SER1397 ALA1398
Unit 4 MET1501 HIS1502 GLY1503 SER1504 ASN1505 LYS1506 LEU1507 PRO1508 GLY1509 PHE1510 ALA1511 THR1512 ARG1513 ALA1514 ILE1515 HIS1516 HIS1517 GLY1518 TYR1519 ASP1520 PRO1521 GLN1522 ASP1523 HIS1524 GLY1525 GLY1526 ALA1527 LEU1528 VAL1529 PRO1530 PRO1531 VAL1532 TYR1533 GLN1534 THR1535 ALA1536 THR1537 PHE1538 THR1539 PHE1540 PRO1541 THR1542 VAL1543 GLU1544 TYR1545 GLY1546 ALA1547 ALA1548 CYS1549 PHE1550 ALA1551 GLY1552 GLU1553 GLN1554 ALA1555 GLY1556 HIS1557 PHE1558 TYR1559 SER1560 ARG1561 ILE1562 SER1563 ASN1564 PRO1565 THR1566 LEU1567 ASN1568 LEU1569 LEU1570 GLU1571 ALA1572 ARG1573 MET1574 ALA1575 SER1576 LEU1577 GLU1578 GLY1579 GLY1580 GLU1581 ALA1582 GLY1583 LEU1584 ALA1585 LEU1586 ALA1587 SER1588 GLY1589 MET1590 GLY1591 ALA1592 ILE1593 THR1594 SER1595 THR1596 LEU1597 TRP1598 THR1599 LEU1600 LEU1601 ARG1602 PRO1603 GLY1604 ASP1605 GLU1606 VAL1607 LEU1608 LEU1609 GLY1610 ASN1611 THR1612 LEU1613 TYR1614 GLY1615 CYS1616 THR1617 PHE1618 ALA1619 PHE1620 LEU1621 HIS1622 HIS1623 GLY1624 ILE1625 GLY1626 GLU1627 PHE1628 GLY1629 VAL1630 LYS1631 LEU1632 ARG1633 HIS1634 VAL1635 ASP1636 MET1637 ALA1638 ASP1639 LEU1640 GLN1641 ALA1642 LEU1643 GLU1644 ALA1645 ALA1646 MET1647 THR1648 PRO1649 ALA1650 THR1651 ARG1652 VAL1653 ILE1654 TYR1655 PHE1656 GLU1657 SER1658 PRO1659 ALA1660 ASN1661 PRO1662 ASN1663 MET1664 HIS1665 MET1666 ALA1667 ASP1668 ILE1669 ALA1670 GLY1671 VAL1672 ALA1673 LYS1674 ILE1675 ALA1676 ARG1677 LYS1678 HIS1679 GLY1680 ALA1681 THR1682 VAL1683 VAL1684 VAL1685 ASP1686 ASN1687 THR1688 TYR1689 CYS1690 THR1691 PRO1692 TYR1693 LEU1694 GLN1695 ARG1696 PRO1697 LEU1698 GLU1699 LEU1700 GLY1701 ALA1702 ASP1703 LEU1704 VAL1705 VAL1706 HIS1707 SER1708 ALA1709 THR1710 LLP1711 TYR1712 LEU1713 SER1714 GLY1715 HIS1716 GLY1717 ASP1718 ILE1719 THR1720 ALA1721 GLY1722 ILE1723 VAL1724 VAL1725 GLY1726 SER1727 GLN1728 ALA1729 LEU1730 VAL1731 ASP1732 ARG1733 ILE1734 ARG1735 LEU1736 GLN1737 GLY1738 LEU1739 LYS1740 ASP1741 MET1742 THR1743 GLY1744 ALA1745 VAL1746 LEU1747 SER1748 PRO1749 HIS1750 ASP1751 ALA1752 ALA1753 LEU1754 LEU1755 MET1756 ARG1757 GLY1758 ILE1759 LYS1760 THR1761 LEU1762 ASN1763 LEU1764 ARG1765 MET1766 ASP1767 ARG1768 HIS1769 CYS1770 ALA1771 ASN1772 ALA1773 GLN1774 VAL1775 LEU1776 ALA1777 GLU1778 PHE1779 LEU1780 ALA1781 ARG1782 GLN1783 PRO1784 GLN1785 VAL1786 GLU1787 LEU1788 ILE1789 HIS1790 TYR1791 PRO1792 GLY1793 LEU1794 ALA1795 SER1796 PHE1797 PRO1798 GLN1799 TYR1800 THR1801 LEU1802 ALA1803 ARG1804 GLN1805 GLN1806 MET1807 SER1808 GLN1809 PRO1810 GLY1811 GLY1812 MET1813 ILE1814 ALA1815 PHE1816 GLU1817 LEU1818 LYS1819 GLY1820 GLY1821 ILE1822 GLY1823 ALA1824 GLY1825 ARG1826 ARG1827 PHE1828 MET1829 ASN1830 ALA1831 LEU1832 GLN1833 LEU1834 PHE1835 SER1836 ARG1837 ALA1838 VAL1839 SER1840 LEU1841 GLY1842 ASP1843 ALA1844 GLU1845 SER1846 LEU1847 ALA1848 GLN1849 HIS1850 PRO1851 ALA1852 SER1853 MET1854 THR1855 HIS1856 SER1857 SER1858 TYR1859 THR1860 PRO1861 GLU1862 GLU1863 ARG1864 ALA1865 HIS1866 TYR1867 GLY1868 ILE1869 SER1870 GLU1871 GLY1872 LEU1873 VAL1874 ARG1875 LEU1876 SER1877 VAL1878 GLY1879 LEU1880 GLU1881 ASP1882 ILE1883 ASP1884 ASP1885 LEU1886 LEU1887 ALA1888 ASP1889 VAL1890 GLN1891 GLN1892 ALA1893 LEU1894 LYS1895 ALA1896 SER1897 ALA1898

Ligands
Unit 5 SO4400
Unit 6 SO4900 SO41901
Unit 7 SO41400
Unit 8 SO41900

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany