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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURES OF THE LIGANDED AND UNLIGANDED NICKEL BIN PROTEIN NIKA FROM ESCHERICHIA COLI (NICKEL LIGANDED FORM)
Keywords NICKEL BINDING PROTEIN, NICKEL LIGANDED FORM, METAL TRANSPOR
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1UIV     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NICKEL-BINDING PERIPLASMIC PROTEIN  A 497 3948 0
2  Protein   NICKEL-BINDING PERIPLASMIC PROTEIN  B 496 3941 0
3  Ligand   NICKEL-BINDING PERIPLASMIC PROTEIN  A 1 0 1
4  Ligand   NICKEL-BINDING PERIPLASMIC PROTEIN  B 1 0 1
5 Water     491 0 491
total       1486 7889 493
Proteins
Unit 1 ASP4 GLU5 ILE6 THR7 THR8 ALA9 TRP10 PRO11 VAL12 ASN13 VAL14 GLY15 PRO16 LEU17 ASN18 PRO19 HIS20 LEU21 TYR22 THR23 PRO24 ASN25 GLN26 MET27 PHE28 ALA29 GLN30 SER31 MET32 VAL33 TYR34 GLU35 PRO36 LEU37 VAL38 LYS39 TYR40 GLN41 ALA42 ASP43 GLY44 SER45 VAL46 ILE47 PRO48 TRP49 LEU50 ALA51 LYS52 SER53 TRP54 THR55 HIS56 SER57 GLU58 ASP59 GLY60 LYS61 THR62 TRP63 THR64 PHE65 THR66 LEU67 ARG68 ASP69 ASP70 VAL71 LYS72 PHE73 SER74 ASN75 GLY76 GLU77 PRO78 PHE79 ASP80 ALA81 GLU82 ALA83 ALA84 ALA85 GLU86 ASN87 PHE88 ARG89 ALA90 VAL91 LEU92 ASP93 ASN94 ARG95 GLN96 ARG97 HIS98 ALA99 TRP100 LEU101 GLU102 LEU103 ALA104 ASN105 GLN106 ILE107 VAL108 ASP109 VAL110 LYS111 ALA112 LEU113 SER114 LYS115 THR116 GLU117 LEU118 GLN119 ILE120 THR121 LEU122 LYS123 SER124 ALA125 TYR126 TYR127 PRO128 PHE129 LEU130 GLN131 GLU132 LEU133 ALA134 LEU135 PRO136 ARG137 PRO138 PHE139 ARG140 PHE141 ILE142 ALA143 PRO144 SER145 GLN146 PHE147 LYS148 ASN149 HIS150 GLU151 THR152 MET153 ASN154 GLY155 ILE156 LYS157 ALA158 PRO159 ILE160 GLY161 THR162 GLY163 PRO164 TRP165 ILE166 LEU167 GLN168 GLU169 SER170 LYS171 LEU172 ASN173 GLN174 TYR175 ASP176 VAL177 PHE178 VAL179 ARG180 ASN181 GLU182 ASN183 TYR184 TRP185 GLY186 GLU187 LYS188 PRO189 ALA190 ILE191 LYS192 LYS193 ILE194 THR195 PHE196 ASN197 VAL198 ILE199 PRO200 ASP201 PRO202 THR203 THR204 ARG205 ALA206 VAL207 ALA208 PHE209 GLU210 THR211 GLY212 ASP213 ILE214 ASP215 LEU216 LEU217 TYR218 GLY219 ASN220 GLU221 GLY222 LEU223 LEU224 PRO225 LEU226 ASP227 THR228 PHE229 ALA230 ARG231 PHE232 SER233 GLN234 ASN235 PRO236 ALA237 TYR238 HIS239 THR240 GLN241 LEU242 SER243 GLN244 PRO245 ILE246 GLU247 THR248 VAL249 MET250 LEU251 ALA252 LEU253 ASN254 THR255 ALA256 LYS257 ALA258 PRO259 THR260 ASN261 GLU262 LEU263 ALA264 VAL265 ARG266 GLU267 ALA268 LEU269 ASN270 TYR271 ALA272 VAL273 ASN274 LYS275 LYS276 SER277 LEU278 ILE279 ASP280 ASN281 ALA282 LEU283 TYR284 GLY285 THR286 GLN287 GLN288 VAL289 ALA290 ASP291 THR292 LEU293 PHE294 ALA295 PRO296 SER297 VAL298 PRO299 TYR300 ALA301 ASN302 LEU303 GLY304 LEU305 LYS306 PRO307 SER308 GLN309 TYR310 ASP311 PRO312 GLN313 LYS314 ALA315 LYS316 ALA317 LEU318 LEU319 GLU320 LYS321 ALA322 GLY323 TRP324 THR325 LEU326 PRO327 ALA328 GLY329 LYS330 ASP331 ILE332 ARG333 GLU334 LYS335 ASN336 GLY337 GLN338 PRO339 LEU340 ARG341 ILE342 GLU343 LEU344 SER345 PHE346 ILE347 GLY348 THR349 ASP350 ALA351 LEU352 SER353 LYS354 SER355 MET356 ALA357 GLU358 ILE359 ILE360 ARG361 ALA362 ASP363 MET364 ARG365 GLN366 ILE367 GLY368 ALA369 ASP370 VAL371 SER372 LEU373 ILE374 GLY375 GLU376 GLU377 GLU378 SER379 SER380 ILE381 TYR382 ALA383 ARG384 GLN385 ARG386 ASP387 GLY388 ARG389 PHE390 GLY391 MET392 ILE393 PHE394 HIS395 ARG396 THR397 TRP398 GLY399 ALA400 PRO401 TYR402 ASP403 PRO404 HIS405 ALA406 PHE407 LEU408 SER409 SER410 MET411 ARG412 VAL413 PRO414 SER415 HIS416 ALA417 ASP418 PHE419 GLN420 ALA421 GLN422 GLN423 GLY424 LEU425 ALA426 ASP427 LYS428 PRO429 LEU430 ILE431 ASP432 LYS433 GLU434 ILE435 GLY436 GLU437 VAL438 LEU439 ALA440 THR441 HIS442 ASP443 GLU444 THR445 GLN446 ARG447 GLN448 ALA449 LEU450 TYR451 ARG452 ASP453 ILE454 LEU455 THR456 ARG457 LEU458 HIS459 ASP460 GLU461 ALA462 VAL463 TYR464 LEU465 PRO466 ILE467 SER468 TYR469 ILE470 SER471 MET472 MET473 VAL474 VAL475 SER476 LYS477 PRO478 GLU479 LEU480 GLY481 ASN482 ILE483 PRO484 TYR485 ALA486 PRO487 ILE488 ALA489 THR490 GLU491 ILE492 PRO493 PHE494 GLU495 GLN496 ILE497 LYS498 PRO499 VAL500
Unit 2 ASP1004 GLU1005 ILE1006 THR1007 THR1008 ALA1009 TRP1010 PRO1011 VAL1012 ASN1013 VAL1014 GLY1015 PRO1016 LEU1017 ASN1018 PRO1019 HIS1020 LEU1021 TYR1022 THR1023 PRO1024 ASN1025 GLN1026 MET1027 PHE1028 ALA1029 GLN1030 SER1031 MET1032 VAL1033 TYR1034 GLU1035 PRO1036 LEU1037 VAL1038 LYS1039 TYR1040 GLN1041 ALA1042 ASP1043 GLY1044 SER1045 VAL1046 ILE1047 PRO1048 TRP1049 LEU1050 ALA1051 LYS1052 SER1053 TRP1054 THR1055 HIS1056 SER1057 GLU1058 ASP1059 GLY1060 LYS1061 THR1062 TRP1063 THR1064 PHE1065 THR1066 LEU1067 ARG1068 ASP1069 ASP1070 VAL1071 LYS1072 PHE1073 SER1074 ASN1075 GLY1076 GLU1077 PRO1078 PHE1079 ASP1080 ALA1081 GLU1082 ALA1083 ALA1084 ALA1085 GLU1086 ASN1087 PHE1088 ARG1089 ALA1090 VAL1091 LEU1092 ASP1093 ASN1094 ARG1095 GLN1096 ARG1097 HIS1098 ALA1099 TRP1100 LEU1101 GLU1102 LEU1103 ALA1104 ASN1105 GLN1106 ILE1107 VAL1108 ASP1109 VAL1110 LYS1111 ALA1112 LEU1113 SER1114 LYS1115 THR1116 GLU1117 LEU1118 GLN1119 ILE1120 THR1121 LEU1122 LYS1123 SER1124 ALA1125 TYR1126 TYR1127 PRO1128 PHE1129 LEU1130 GLN1131 GLU1132 LEU1133 ALA1134 LEU1135 PRO1136 ARG1137 PRO1138 PHE1139 ARG1140 PHE1141 ILE1142 ALA1143 PRO1144 SER1145 GLN1146 PHE1147 LYS1148 ASN1149 HIS1150 GLU1151 THR1152 MET1153 ASN1154 GLY1155 ILE1156 LYS1157 ALA1158 PRO1159 ILE1160 GLY1161 THR1162 GLY1163 PRO1164 TRP1165 ILE1166 LEU1167 GLN1168 GLU1169 SER1170 LYS1171 LEU1172 ASN1173 GLN1174 TYR1175 ASP1176 VAL1177 PHE1178 VAL1179 ARG1180 ASN1181 GLU1182 ASN1183 TYR1184 TRP1185 GLY1186 GLU1187 LYS1188 PRO1189 ALA1190 ILE1191 LYS1192 LYS1193 ILE1194 THR1195 PHE1196 ASN1197 VAL1198 ILE1199 PRO1200 ASP1201 PRO1202 THR1203 THR1204 ARG1205 ALA1206 VAL1207 ALA1208 PHE1209 GLU1210 THR1211 GLY1212 ASP1213 ILE1214 ASP1215 LEU1216 LEU1217 TYR1218 GLY1219 ASN1220 GLU1221 GLY1222 LEU1223 LEU1224 PRO1225 LEU1226 ASP1227 THR1228 PHE1229 ALA1230 ARG1231 PHE1232 SER1233 GLN1234 ASN1235 PRO1236 ALA1237 TYR1238 HIS1239 THR1240 GLN1241 LEU1242 SER1243 GLN1244 PRO1245 ILE1246 GLU1247 THR1248 VAL1249 MET1250 LEU1251 ALA1252 LEU1253 ASN1254 THR1255 ALA1256 LYS1257 ALA1258 PRO1259 THR1260 ASN1261 GLU1262 LEU1263 ALA1264 VAL1265 ARG1266 GLU1267 ALA1268 LEU1269 ASN1270 TYR1271 ALA1272 VAL1273 ASN1274 LYS1275 LYS1276 SER1277 LEU1278 ILE1279 ASP1280 ASN1281 ALA1282 LEU1283 TYR1284 GLY1285 THR1286 GLN1287 GLN1288 VAL1289 ALA1290 ASP1291 THR1292 LEU1293 PHE1294 ALA1295 PRO1296 SER1297 VAL1298 PRO1299 TYR1300 ALA1301 ASN1302 LEU1303 GLY1304 LEU1305 LYS1306 PRO1307 SER1308 GLN1309 TYR1310 ASP1311 PRO1312 GLN1313 LYS1314 ALA1315 LYS1316 ALA1317 LEU1318 LEU1319 GLU1320 LYS1321 ALA1322 GLY1323 TRP1324 THR1325 LEU1326 PRO1327 ALA1328 GLY1329 LYS1330 ASP1331 ILE1332 ARG1333 GLU1334 LYS1335 ASN1336 GLY1337 GLN1338 PRO1339 LEU1340 ARG1341 ILE1342 GLU1343 LEU1344 SER1345 PHE1346 ILE1347 GLY1348 THR1349 ASP1350 ALA1351 LEU1352 SER1353 LYS1354 SER1355 MET1356 ALA1357 GLU1358 ILE1359 ILE1360 ARG1361 ALA1362 ASP1363 MET1364 ARG1365 GLN1366 ILE1367 GLY1368 ALA1369 ASP1370 VAL1371 SER1372 LEU1373 ILE1374 GLY1375 GLU1376 GLU1377 GLU1378 SER1379 SER1380 ILE1381 TYR1382 ALA1383 ARG1384 GLN1385 ARG1386 ASP1387 GLY1388 ARG1389 PHE1390 GLY1391 MET1392 ILE1393 PHE1394 HIS1395 ARG1396 THR1397 TRP1398 GLY1399 ALA1400 PRO1401 TYR1402 ASP1403 PRO1404 HIS1405 ALA1406 PHE1407 LEU1408 SER1409 SER1410 MET1411 ARG1412 VAL1413 PRO1414 SER1415 HIS1416 ALA1417 ASP1418 PHE1419 GLN1420 ALA1421 GLN1422 GLN1423 GLY1424 LEU1425 ALA1426 ASP1427 LYS1428 PRO1429 LEU1430 ILE1431 ASP1432 LYS1433 GLU1434 ILE1435 GLY1436 GLU1437 VAL1438 LEU1439 ALA1440 THR1441 HIS1442 ASP1443 GLU1444 THR1445 GLN1446 ARG1447 GLN1448 ALA1449 LEU1450 TYR1451 ARG1452 ASP1453 ILE1454 LEU1455 THR1456 ARG1457 LEU1458 HIS1459 ASP1460 GLU1461 ALA1462 VAL1463 TYR1464 LEU1465 PRO1466 ILE1467 SER1468 TYR1469 ILE1470 SER1471 MET1472 MET1473 VAL1474 VAL1475 SER1476 LYS1477 PRO1478 GLU1479 LEU1480 GLY1481 ASN1482 ILE1483 PRO1484 TYR1485 ALA1486 PRO1487 ILE1488 ALA1489 THR1490 GLU1491 ILE1492 PRO1493 PHE1494 GLU1495 GLN1496 ILE1497 LYS1498 PRO1499
Ligands
Unit 3 NI503
Unit 4 NI1503
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany