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Sequence, Chains, Asymmetric and Biological Units

Title MEDIUM-CHAIN ACYL-COA DEHYDROGENASE WITH 3-THIAOCTANOYL-COA
Keywords MCAD COMPLEX, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1UDY     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ACYL-COA DEHYDROGENASE, MEDIUM-CHAIN SPECIFIC  A 385 2981 0
2  Protein   ACYL-COA DEHYDROGENASE, MEDIUM-CHAIN SPECIFIC  B 383 2960 0
3  Protein   ACYL-COA DEHYDROGENASE, MEDIUM-CHAIN SPECIFIC  C 385 2981 0
4  Protein   ACYL-COA DEHYDROGENASE, MEDIUM-CHAIN SPECIFIC  D 385 2981 0
5  Ligand   ACYL-COA DEHYDROGENASE, MEDIUM-CHAIN SPECIFIC  A 2 0 110
6  Ligand   ACYL-COA DEHYDROGENASE, MEDIUM-CHAIN SPECIFIC  B 2 0 110
7  Ligand   ACYL-COA DEHYDROGENASE, MEDIUM-CHAIN SPECIFIC  C 2 0 110
8  Ligand   ACYL-COA DEHYDROGENASE, MEDIUM-CHAIN SPECIFIC  D 2 0 110
9 Water     251 0 251
total       1797 11903 691

Proteins
Unit 1 GLY11 PHE12 SER13 PHE14 GLU15 LEU16 THR17 GLU18 GLN19 GLN20 LYS21 GLU22 PHE23 GLN24 ALA25 THR26 ALA27 ARG28 LYS29 PHE30 ALA31 ARG32 GLU33 GLU34 ILE35 ILE36 PRO37 VAL38 ALA39 ALA40 GLU41 TYR42 ASP43 ARG44 THR45 GLY46 GLU47 TYR48 PRO49 VAL50 PRO51 LEU52 LEU53 LYS54 ARG55 ALA56 TRP57 GLU58 LEU59 GLY60 LEU61 MET62 ASN63 THR64 HIS65 ILE66 PRO67 GLU68 SER69 PHE70 GLY71 GLY72 LEU73 GLY74 LEU75 GLY76 ILE77 ILE78 ASP79 SER80 CYS81 LEU82 ILE83 THR84 GLU85 GLU86 LEU87 ALA88 TYR89 GLY90 CYS91 THR92 GLY93 VAL94 GLN95 THR96 ALA97 ILE98 GLU99 ALA100 ASN101 THR102 LEU103 GLY104 GLN105 VAL106 PRO107 LEU108 ILE109 ILE110 GLY111 GLY112 ASN113 TYR114 GLN115 GLN116 GLN117 LYS118 LYS119 TYR120 LEU121 GLY122 ARG123 MET124 THR125 GLU126 GLU127 PRO128 LEU129 MET130 CYS131 ALA132 TYR133 CYS134 VAL135 THR136 GLU137 PRO138 GLY139 ALA140 GLY141 SER142 ASP143 VAL144 ALA145 GLY146 ILE147 LYS148 THR149 LYS150 ALA151 GLU152 LYS153 LYS154 GLY155 ASP156 GLU157 TYR158 ILE159 ILE160 ASN161 GLY162 GLN163 LYS164 MET165 TRP166 ILE167 THR168 ASN169 GLY170 GLY171 LYS172 ALA173 ASN174 TRP175 TYR176 PHE177 LEU178 LEU179 ALA180 ARG181 SER182 ASP183 PRO184 ASP185 PRO186 LYS187 ALA188 PRO189 ALA190 SER191 LYS192 ALA193 PHE194 THR195 GLY196 PHE197 ILE198 VAL199 GLU200 ALA201 ASP202 THR203 PRO204 GLY205 VAL206 GLN207 ILE208 GLY209 ARG210 LYS211 GLU212 ILE213 ASN214 MET215 GLY216 GLN217 ARG218 CYS219 SER220 ASP221 THR222 ARG223 GLY224 ILE225 VAL226 PHE227 GLU228 ASP229 VAL230 ARG231 VAL232 PRO233 LYS234 GLU235 ASN236 VAL237 LEU238 THR239 GLY240 GLU241 GLY242 ALA243 GLY244 PHE245 LYS246 ILE247 ALA248 MET249 GLY250 THR251 PHE252 ASP253 LYS254 THR255 ARG256 PRO257 PRO258 VAL259 ALA260 ALA261 GLY262 ALA263 VAL264 GLY265 LEU266 ALA267 GLN268 ARG269 ALA270 LEU271 ASP272 GLU273 ALA274 THR275 LYS276 TYR277 ALA278 LEU279 GLU280 ARG281 LYS282 THR283 PHE284 GLY285 LYS286 LEU287 LEU288 ALA289 GLU290 HIS291 GLN292 GLY293 ILE294 SER295 PHE296 LEU297 LEU298 ALA299 ASP300 MET301 ALA302 MET303 LYS304 VAL305 GLU306 LEU307 ALA308 ARG309 LEU310 SER311 TYR312 GLN313 ARG314 ALA315 ALA316 TRP317 GLU318 ILE319 ASP320 SER321 GLY322 ARG323 ARG324 ASN325 THR326 TYR327 TYR328 ALA329 SER330 ILE331 ALA332 LYS333 ALA334 TYR335 ALA336 ALA337 ASP338 ILE339 ALA340 ASN341 GLN342 LEU343 ALA344 THR345 ASP346 ALA347 VAL348 GLN349 VAL350 PHE351 GLY352 GLY353 ASN354 GLY355 PHE356 ASN357 THR358 GLU359 TYR360 PRO361 VAL362 GLU363 LYS364 LEU365 MET366 ARG367 ASP368 ALA369 LYS370 ILE371 TYR372 GLN373 ILE374 TYR375 GLU376 GLY377 THR378 ALA379 GLN380 ILE381 GLN382 ARG383 ILE384 ILE385 ILE386 ALA387 ARG388 GLU389 HIS390 ILE391 GLY392 ARG393 TYR394 LYS395
Unit 2 GLY11 PHE12 SER13 PHE14 GLU15 LEU16 THR17 GLU18 GLN19 GLN20 LYS21 GLU22 PHE23 GLN24 ALA25 THR26 ALA27 ARG28 LYS29 PHE30 ALA31 ARG32 GLU33 GLU34 ILE35 ILE36 PRO37 VAL38 ALA39 ALA40 GLU41 TYR42 ASP43 ARG44 THR45 GLY46 GLU47 TYR48 PRO49 VAL50 PRO51 LEU52 LEU53 LYS54 ARG55 ALA56 TRP57 GLU58 LEU59 GLY60 LEU61 MET62 ASN63 THR64 HIS65 ILE66 PRO67 GLU68 SER69 PHE70 GLY71 GLY72 LEU73 GLY74 LEU75 GLY76 ILE77 ILE78 ASP79 SER80 CYS81 LEU82 ILE83 THR84 GLU85 GLU86 LEU87 ALA88 TYR89 GLY90 CYS91 THR92 GLY93 VAL94 GLN95 THR96 ALA97 ILE98 GLU99 ALA100 ASN101 THR102 LEU103 GLY104 GLN105 VAL106 PRO107 LEU108 ILE109 ILE110 GLY111 GLY112 ASN113 TYR114 GLN115 GLN116 GLN117 LYS118 LYS119 TYR120 LEU121 GLY122 ARG123 MET124 THR125 GLU126 GLU127 PRO128 LEU129 MET130 CYS131 ALA132 TYR133 CYS134 VAL135 THR136 GLU137 PRO138 GLY139 ALA140 GLY141 SER142 ASP143 VAL144 ALA145 GLY146 ILE147 LYS148 THR149 LYS150 ALA151 GLU152 LYS153 LYS154 GLY155 ASP156 GLU157 TYR158 ILE159 ILE160 ASN161 GLY162 GLN163 LYS164 MET165 TRP166 ILE167 THR168 ASN169 GLY170 GLY171 LYS172 ALA173 ASN174 TRP175 TYR176 PHE177 LEU178 LEU179 ALA180 ARG181 SER182 ASP183 PRO184 ASP185 PRO186 LYS187 ALA188 PRO189 ALA190 SER191 LYS192 ALA193 PHE194 THR195 GLY196 PHE197 ILE198 VAL199 GLU200 ALA201 ASP202 THR203 PRO204 GLY205 VAL206 GLN207 ILE208 GLY209 ARG210 LYS211 GLU212 ILE213 ASN214 MET215 GLY216 GLN217 ARG218 CYS219 SER220 ASP221 THR222 ARG223 GLY224 ILE225 VAL226 PHE227 GLU228 ASP229 VAL230 ARG231 VAL232 PRO233 LYS234 GLU235 ASN236 VAL237 LEU238 THR239 GLY240 GLU241 GLY242 ALA243 GLY244 PHE245 LYS246 ILE247 ALA248 MET249 GLY250 THR251 PHE252 ASP253 LYS254 THR255 ARG256 PRO257 PRO258 VAL259 ALA260 ALA261 GLY262 ALA263 VAL264 GLY265 LEU266 ALA267 GLN268 ARG269 ALA270 LEU271 ASP272 GLU273 ALA274 THR275 LYS276 TYR277 ALA278 LEU279 GLU280 ARG281 LYS282 THR283 PHE284 GLY285 LYS286 LEU287 LEU288 ALA289 GLU290 HIS291 GLN292 GLY293 ILE294 SER295 PHE296 LEU297 LEU298 ALA299 ASP300 MET301 ALA302 MET303 LYS304 VAL305 GLU306 LEU307 ALA308 ARG309 LEU310 SER311 TYR312 GLN313 ARG314 ALA315 ALA316 TRP317 GLU318 ILE319 ASP320 SER321 GLY322 ARG323 ARG324 ASN325 THR326 TYR327 TYR328 ALA329 SER330 ILE331 ALA332 LYS333 ALA334 TYR335 ALA336 ALA337 ASP338 ILE339 ALA340 ASN341 GLN342 LEU343 ALA344 THR345 ASP346 ALA347 VAL348 GLN349 VAL350 PHE351 GLY352 GLY353 ASN354 GLY355 PHE356 ASN357 THR358 GLU359 TYR360 PRO361 VAL362 GLU363 LYS364 LEU365 MET366 ARG367 ASP368 ALA369 LYS370 ILE371 TYR372 GLN373 ILE374 TYR375 GLU376 GLY377 THR378 ALA379 GLN380 ILE381 GLN382 ARG383 ILE384 ILE385 ILE386 ALA387 ARG388 GLU389 HIS390 ILE391 GLY392 ARG393
Unit 3 GLY11 PHE12 SER13 PHE14 GLU15 LEU16 THR17 GLU18 GLN19 GLN20 LYS21 GLU22 PHE23 GLN24 ALA25 THR26 ALA27 ARG28 LYS29 PHE30 ALA31 ARG32 GLU33 GLU34 ILE35 ILE36 PRO37 VAL38 ALA39 ALA40 GLU41 TYR42 ASP43 ARG44 THR45 GLY46 GLU47 TYR48 PRO49 VAL50 PRO51 LEU52 LEU53 LYS54 ARG55 ALA56 TRP57 GLU58 LEU59 GLY60 LEU61 MET62 ASN63 THR64 HIS65 ILE66 PRO67 GLU68 SER69 PHE70 GLY71 GLY72 LEU73 GLY74 LEU75 GLY76 ILE77 ILE78 ASP79 SER80 CYS81 LEU82 ILE83 THR84 GLU85 GLU86 LEU87 ALA88 TYR89 GLY90 CYS91 THR92 GLY93 VAL94 GLN95 THR96 ALA97 ILE98 GLU99 ALA100 ASN101 THR102 LEU103 GLY104 GLN105 VAL106 PRO107 LEU108 ILE109 ILE110 GLY111 GLY112 ASN113 TYR114 GLN115 GLN116 GLN117 LYS118 LYS119 TYR120 LEU121 GLY122 ARG123 MET124 THR125 GLU126 GLU127 PRO128 LEU129 MET130 CYS131 ALA132 TYR133 CYS134 VAL135 THR136 GLU137 PRO138 GLY139 ALA140 GLY141 SER142 ASP143 VAL144 ALA145 GLY146 ILE147 LYS148 THR149 LYS150 ALA151 GLU152 LYS153 LYS154 GLY155 ASP156 GLU157 TYR158 ILE159 ILE160 ASN161 GLY162 GLN163 LYS164 MET165 TRP166 ILE167 THR168 ASN169 GLY170 GLY171 LYS172 ALA173 ASN174 TRP175 TYR176 PHE177 LEU178 LEU179 ALA180 ARG181 SER182 ASP183 PRO184 ASP185 PRO186 LYS187 ALA188 PRO189 ALA190 SER191 LYS192 ALA193 PHE194 THR195 GLY196 PHE197 ILE198 VAL199 GLU200 ALA201 ASP202 THR203 PRO204 GLY205 VAL206 GLN207 ILE208 GLY209 ARG210 LYS211 GLU212 ILE213 ASN214 MET215 GLY216 GLN217 ARG218 CYS219 SER220 ASP221 THR222 ARG223 GLY224 ILE225 VAL226 PHE227 GLU228 ASP229 VAL230 ARG231 VAL232 PRO233 LYS234 GLU235 ASN236 VAL237 LEU238 THR239 GLY240 GLU241 GLY242 ALA243 GLY244 PHE245 LYS246 ILE247 ALA248 MET249 GLY250 THR251 PHE252 ASP253 LYS254 THR255 ARG256 PRO257 PRO258 VAL259 ALA260 ALA261 GLY262 ALA263 VAL264 GLY265 LEU266 ALA267 GLN268 ARG269 ALA270 LEU271 ASP272 GLU273 ALA274 THR275 LYS276 TYR277 ALA278 LEU279 GLU280 ARG281 LYS282 THR283 PHE284 GLY285 LYS286 LEU287 LEU288 ALA289 GLU290 HIS291 GLN292 GLY293 ILE294 SER295 PHE296 LEU297 LEU298 ALA299 ASP300 MET301 ALA302 MET303 LYS304 VAL305 GLU306 LEU307 ALA308 ARG309 LEU310 SER311 TYR312 GLN313 ARG314 ALA315 ALA316 TRP317 GLU318 ILE319 ASP320 SER321 GLY322 ARG323 ARG324 ASN325 THR326 TYR327 TYR328 ALA329 SER330 ILE331 ALA332 LYS333 ALA334 TYR335 ALA336 ALA337 ASP338 ILE339 ALA340 ASN341 GLN342 LEU343 ALA344 THR345 ASP346 ALA347 VAL348 GLN349 VAL350 PHE351 GLY352 GLY353 ASN354 GLY355 PHE356 ASN357 THR358 GLU359 TYR360 PRO361 VAL362 GLU363 LYS364 LEU365 MET366 ARG367 ASP368 ALA369 LYS370 ILE371 TYR372 GLN373 ILE374 TYR375 GLU376 GLY377 THR378 ALA379 GLN380 ILE381 GLN382 ARG383 ILE384 ILE385 ILE386 ALA387 ARG388 GLU389 HIS390 ILE391 GLY392 ARG393 TYR394 LYS395
Unit 4 GLY11 PHE12 SER13 PHE14 GLU15 LEU16 THR17 GLU18 GLN19 GLN20 LYS21 GLU22 PHE23 GLN24 ALA25 THR26 ALA27 ARG28 LYS29 PHE30 ALA31 ARG32 GLU33 GLU34 ILE35 ILE36 PRO37 VAL38 ALA39 ALA40 GLU41 TYR42 ASP43 ARG44 THR45 GLY46 GLU47 TYR48 PRO49 VAL50 PRO51 LEU52 LEU53 LYS54 ARG55 ALA56 TRP57 GLU58 LEU59 GLY60 LEU61 MET62 ASN63 THR64 HIS65 ILE66 PRO67 GLU68 SER69 PHE70 GLY71 GLY72 LEU73 GLY74 LEU75 GLY76 ILE77 ILE78 ASP79 SER80 CYS81 LEU82 ILE83 THR84 GLU85 GLU86 LEU87 ALA88 TYR89 GLY90 CYS91 THR92 GLY93 VAL94 GLN95 THR96 ALA97 ILE98 GLU99 ALA100 ASN101 THR102 LEU103 GLY104 GLN105 VAL106 PRO107 LEU108 ILE109 ILE110 GLY111 GLY112 ASN113 TYR114 GLN115 GLN116 GLN117 LYS118 LYS119 TYR120 LEU121 GLY122 ARG123 MET124 THR125 GLU126 GLU127 PRO128 LEU129 MET130 CYS131 ALA132 TYR133 CYS134 VAL135 THR136 GLU137 PRO138 GLY139 ALA140 GLY141 SER142 ASP143 VAL144 ALA145 GLY146 ILE147 LYS148 THR149 LYS150 ALA151 GLU152 LYS153 LYS154 GLY155 ASP156 GLU157 TYR158 ILE159 ILE160 ASN161 GLY162 GLN163 LYS164 MET165 TRP166 ILE167 THR168 ASN169 GLY170 GLY171 LYS172 ALA173 ASN174 TRP175 TYR176 PHE177 LEU178 LEU179 ALA180 ARG181 SER182 ASP183 PRO184 ASP185 PRO186 LYS187 ALA188 PRO189 ALA190 SER191 LYS192 ALA193 PHE194 THR195 GLY196 PHE197 ILE198 VAL199 GLU200 ALA201 ASP202 THR203 PRO204 GLY205 VAL206 GLN207 ILE208 GLY209 ARG210 LYS211 GLU212 ILE213 ASN214 MET215 GLY216 GLN217 ARG218 CYS219 SER220 ASP221 THR222 ARG223 GLY224 ILE225 VAL226 PHE227 GLU228 ASP229 VAL230 ARG231 VAL232 PRO233 LYS234 GLU235 ASN236 VAL237 LEU238 THR239 GLY240 GLU241 GLY242 ALA243 GLY244 PHE245 LYS246 ILE247 ALA248 MET249 GLY250 THR251 PHE252 ASP253 LYS254 THR255 ARG256 PRO257 PRO258 VAL259 ALA260 ALA261 GLY262 ALA263 VAL264 GLY265 LEU266 ALA267 GLN268 ARG269 ALA270 LEU271 ASP272 GLU273 ALA274 THR275 LYS276 TYR277 ALA278 LEU279 GLU280 ARG281 LYS282 THR283 PHE284 GLY285 LYS286 LEU287 LEU288 ALA289 GLU290 HIS291 GLN292 GLY293 ILE294 SER295 PHE296 LEU297 LEU298 ALA299 ASP300 MET301 ALA302 MET303 LYS304 VAL305 GLU306 LEU307 ALA308 ARG309 LEU310 SER311 TYR312 GLN313 ARG314 ALA315 ALA316 TRP317 GLU318 ILE319 ASP320 SER321 GLY322 ARG323 ARG324 ASN325 THR326 TYR327 TYR328 ALA329 SER330 ILE331 ALA332 LYS333 ALA334 TYR335 ALA336 ALA337 ASP338 ILE339 ALA340 ASN341 GLN342 LEU343 ALA344 THR345 ASP346 ALA347 VAL348 GLN349 VAL350 PHE351 GLY352 GLY353 ASN354 GLY355 PHE356 ASN357 THR358 GLU359 TYR360 PRO361 VAL362 GLU363 LYS364 LEU365 MET366 ARG367 ASP368 ALA369 LYS370 ILE371 TYR372 GLN373 ILE374 TYR375 GLU376 GLY377 THR378 ALA379 GLN380 ILE381 GLN382 ARG383 ILE384 ILE385 ILE386 ALA387 ARG388 GLU389 HIS390 ILE391 GLY392 ARG393 TYR394 LYS395

Ligands
Unit 5 FAD399 CS8400
Unit 6 FAD1399 CS81400
Unit 7 FAD2399 CS82400
Unit 8 FAD3399 CS83400

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany