1UBK - Sequence, Chains, Asymmetric and Biological Units

• Title: THREE-DIMENSIONAL STRUCTURE OF THE CARBON MONOXIDE COMPLEX O [NIFE]HYDROGENASE FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F
• Keywords: HIGH RESOLUTION CRYSTAL STRUCTURE, [NIFE]HYDROGENASE, OXIDOR CARBON MONOXIDE COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1UBK	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PERIPLASMIC [NIFE] HYDROGENASE SMALL SUBUNIT	S	267	2019	0
2	Protein	PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT	L	534	4177	0
3	Ligand	PERIPLASMIC [NIFE] HYDROGENASE SMALL SUBUNIT	S	6	0	47
4	Ligand	PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT	L	7	0	43
5	Water			1059	0	1059
total				1873	6196	1149

Proteins

Unit 1

LEU 1 MET 2 GLY 3 PRO 4 ARG 5 ARG 6 PRO 7 SER 8 VAL 9 VAL 10 TYR 11 LEU 12 HIS 13 ASN 14 ALA 15 GLU 16 CYS 17 THR 18 GLY 19 CYS 20 SER 21 GLU 22 SER 23 VAL 24 LEU 25 ARG 26 ALA 27 PHE 28 GLU 29 PRO 30 TYR 31 ILE 32 ASP 33 THR 34 LEU 35 ILE 36 LEU 37 ASP 38 THR 39 LEU 40 SER 41 LEU 42 ASP 43 TYR 44 HIS 45 GLU 46 THR 47 ILE 48 MET 49 ALA 50 ALA 51 ALA 52 GLY 53 ASP 54 ALA 55 ALA 56 GLU 57 ALA 58 ALA 59 LEU 60 GLU 61 GLN 62 ALA 63 VAL 64 ASN 65 SER 66 PRO 67 HIS 68 GLY 69 PHE 70 ILE 71 ALA 72 VAL 73 VAL 74 GLU 75 GLY 76 GLY 77 ILE 78 PRO 79 THR 80 ALA 81 ALA 82 ASN 83 GLY 84 ILE 85 TYR 86 GLY 87 LYS 88 VAL 89 ALA 90 ASN 91 HIS 92 THR 93 MET 94 LEU 95 ASP 96 ILE 97 CYS 98 SER 99 ARG 100 ILE 101 LEU 102 PRO 103 LYS 104 ALA 105 GLN 106 ALA 107 VAL 108 ILE 109 ALA 110 TYR 111 GLY 112 THR 113 CYS 114 ALA 115 THR 116 PHE 117 GLY 118 GLY 119 VAL 120 GLN 121 ALA 122 ALA 123 LYS 124 PRO 125 ASN 126 PRO 127 THR 128 GLY 129 ALA 130 LYS 131 GLY 132 VAL 133 ASN 134 ASP 135 ALA 136 LEU 137 LYS 138 HIS 139 LEU 140 GLY 141 VAL 142 LYS 143 ALA 144 ILE 145 ASN 146 ILE 147 ALA 148 GLY 149 CYS 150 PRO 151 PRO 152 ASN 153 PRO 154 TYR 155 ASN 156 LEU 157 VAL 158 GLY 159 THR 160 ILE 161 VAL 162 TYR 163 TYR 164 LEU 165 LYS 166 ASN 167 LYS 168 ALA 169 ALA 170 PRO 171 GLU 172 LEU 173 ASP 174 SER 175 LEU 176 ASN 177 ARG 178 PRO 179 THR 180 MET 181 PHE 182 PHE 183 GLY 184 GLN 185 THR 186 VAL 187 HIS 188 GLU 189 GLN 190 CYS 191 PRO 192 ARG 193 LEU 194 PRO 195 HIS 196 PHE 197 ASP 198 ALA 199 GLY 200 GLU 201 PHE 202 ALA 203 PRO 204 SER 205 PHE 206 GLU 207 SER 208 GLU 209 GLU 210 ALA 211 ARG 212 LYS 213 GLY 214 TRP 215 CYS 216 LEU 217 TYR 218 GLU 219 LEU 220 GLY 221 CYS 222 LYS 223 GLY 224 PRO 225 VAL 226 THR 227 MET 228 ASN 229 ASN 230 CYS 231 PRO 232 LYS 233 ILE 234 LYS 235 PHE 236 ASN 237 GLN 238 THR 239 ASN 240 TRP 241 PRO 242 VAL 243 ASP 244 ALA 245 GLY 246 HIS 247 PRO 248 CYS 249 ILE 250 GLY 251 CYS 252 SER 253 GLU 254 PRO 255 ASP 256 PHE 257 TRP 258 ASP 259 ALA 260 MET 261 THR 262 PRO 263 PHE 264 TYR 265 GLN 266 ASN 267

Unit 2

SER 19 SER 20 TYR 21 SER 22 GLY 23 PRO 24 ILE 25 VAL 26 VAL 27 ASP 28 PRO 29 VAL 30 THR 31 ARG 32 ILE 33 GLU 34 GLY 35 HIS 36 LEU 37 ARG 38 ILE 39 GLU 40 VAL 41 GLU 42 VAL 43 GLU 44 ASN 45 GLY 46 LYS 47 VAL 48 LYS 49 ASN 50 ALA 51 TYR 52 SER 53 SER 54 SER 55 THR 56 LEU 57 PHE 58 ARG 59 GLY 60 LEU 61 GLU 62 ILE 63 ILE 64 LEU 65 LYS 66 GLY 67 ARG 68 ASP 69 PRO 70 ARG 71 ASP 72 ALA 73 GLN 74 HIS 75 PHE 76 THR 77 GLN 78 ARG 79 THR 80 CYS 81 GLY 82 VAL 83 CYS 84 THR 85 TYR 86 THR 87 HIS 88 ALA 89 LEU 90 ALA 91 SER 92 THR 93 ARG 94 CYS 95 VAL 96 ASP 97 ASN 98 ALA 99 VAL 100 GLY 101 VAL 102 HIS 103 ILE 104 PRO 105 LYS 106 ASN 107 ALA 108 THR 109 TYR 110 ILE 111 ARG 112 ASN 113 LEU 114 VAL 115 LEU 116 GLY 117 ALA 118 GLN 119 TYR 120 LEU 121 HIS 122 ASP 123 HIS 124 ILE 125 VAL 126 HIS 127 PHE 128 TYR 129 HIS 130 LEU 131 HIS 132 ALA 133 LEU 134 ASP 135 PHE 136 VAL 137 ASP 138 VAL 139 THR 140 ALA 141 ALA 142 LEU 143 LYS 144 ALA 145 ASP 146 PRO 147 ALA 148 LYS 149 ALA 150 ALA 151 LYS 152 VAL 153 ALA 154 SER 155 SER 156 ILE 157 SER 158 PRO 159 ARG 160 LYS 161 THR 162 THR 163 ALA 164 ALA 165 ASP 166 LEU 167 LYS 168 ALA 169 VAL 170 GLN 171 ASP 172 LYS 173 LEU 174 LYS 175 THR 176 PHE 177 VAL 178 GLU 179 THR 180 GLY 181 GLN 182 LEU 183 GLY 184 PRO 185 PHE 186 THR 187 ASN 188 ALA 189 TYR 190 PHE 191 LEU 192 GLY 193 GLY 194 HIS 195 PRO 196 ALA 197 TYR 198 TYR 199 LEU 200 ASP 201 PRO 202 GLU 203 THR 204 ASN 205 LEU 206 ILE 207 ALA 208 THR 209 ALA 210 HIS 211 TYR 212 LEU 213 GLU 214 ALA 215 LEU 216 ARG 217 LEU 218 GLN 219 VAL 220 LYS 221 ALA 222 ALA 223 ARG 224 ALA 225 MET 226 ALA 227 VAL 228 PHE 229 GLY 230 ALA 231 LYS 232 ASN 233 PRO 234 HIS 235 THR 236 GLN 237 PHE 238 THR 239 VAL 240 VAL 241 GLY 242 GLY 243 VAL 244 THR 245 CYS 246 TYR 247 ASP 248 ALA 249 LEU 250 THR 251 PRO 252 GLN 253 ARG 254 ILE 255 ALA 256 GLU 257 PHE 258 GLU 259 ALA 260 LEU 261 TRP 262 LYS 263 GLU 264 THR 265 LYS 266 ALA 267 PHE 268 VAL 269 ASP 270 GLU 271 VAL 272 TYR 273 ILE 274 PRO 275 ASP 276 LEU 277 LEU 278 VAL 279 VAL 280 ALA 281 ALA 282 ALA 283 TYR 284 LYS 285 ASP 286 TRP 287 THR 288 GLN 289 TYR 290 GLY 291 GLY 292 THR 293 ASP 294 ASN 295 PHE 296 ILE 297 THR 298 PHE 299 GLY 300 GLU 301 PHE 302 PRO 303 LYS 304 ASP 305 GLU 306 TYR 307 ASP 308 LEU 309 ASN 310 SER 311 ARG 312 PHE 313 PHE 314 LYS 315 PRO 316 GLY 317 VAL 318 VAL 319 PHE 320 LYS 321 ARG 322 ASP 323 PHE 324 LYS 325 ASN 326 ILE 327 LYS 328 PRO 329 PHE 330 ASP 331 LYS 332 MET 333 GLN 334 ILE 335 GLU 336 GLU 337 HIS 338 VAL 339 ARG 340 HIS 341 SER 342 TRP 343 TYR 344 GLU 345 GLY 346 ALA 347 GLU 348 ALA 349 ARG 350 HIS 351 PRO 352 TRP 353 LYS 354 GLY 355 GLN 356 THR 357 GLN 358 PRO 359 LYS 360 TYR 361 THR 362 ASP 363 LEU 364 HIS 365 GLY 366 ASP 367 ASP 368 ARG 369 TYR 370 SER 371 TRP 372 MET 373 LYS 374 ALA 375 PRO 376 ARG 377 TYR 378 MET 379 GLY 380 GLU 381 PRO 382 MET 383 GLU 384 THR 385 GLY 386 PRO 387 LEU 388 ALA 389 GLN 390 VAL 391 LEU 392 ILE 393 ALA 394 TYR 395 SER 396 GLN 397 GLY 398 HIS 399 PRO 400 LYS 401 VAL 402 LYS 403 ALA 404 VAL 405 THR 406 ASP 407 ALA 408 VAL 409 LEU 410 ALA 411 LYS 412 LEU 413 GLY 414 VAL 415 GLY 416 PRO 417 GLU 418 ALA 419 LEU 420 PHE 421 SER 422 THR 423 LEU 424 GLY 425 ARG 426 THR 427 ALA 428 ALA 429 ARG 430 GLY 431 ILE 432 GLU 433 THR 434 ALA 435 VAL 436 ILE 437 ALA 438 GLU 439 TYR 440 VAL 441 GLY 442 VAL 443 MET 444 LEU 445 GLN 446 GLU 447 TYR 448 LYS 449 ASP 450 ASN 451 ILE 452 ALA 453 LYS 454 GLY 455 ASP 456 ASN 457 VAL 458 ILE 459 CYS 460 ALA 461 PRO 462 TRP 463 GLU 464 MET 465 PRO 466 LYS 467 GLN 468 ALA 469 GLU 470 GLY 471 VAL 472 GLY 473 PHE 474 VAL 475 ASN 476 ALA 477 PRO 478 ARG 479 GLY 480 GLY 481 LEU 482 SER 483 HIS 484 TRP 485 ILE 486 ARG 487 ILE 488 GLU 489 ASP 490 GLY 491 LYS 492 ILE 493 GLY 494 ASN 495 PHE 496 GLN 497 LEU 498 VAL 499 VAL 500 PRO 501 SER 502 THR 503 TRP 504 THR 505 LEU 506 GLY 507 PRO 508 ARG 509 CYS 510 ASP 511 LYS 512 ASN 513 LYS 514 LEU 515 SER 516 PRO 517 VAL 518 GLU 519 ALA 520 SER 521 LEU 522 ILE 523 GLY 524 THR 525 PRO 526 VAL 527 ALA 528 ASP 529 ALA 530 LYS 531 ARG 532 PRO 533 VAL 534 GLU 535 ILE 536 LEU 537 ARG 538 THR 539 VAL 540 HIS 541 SER 542 PHE 543 ASP 544 PRO 545 CYS 546 ILE 547 ALA 548 CYS 549 GLY 550 VAL 551 HIS 552

Ligands

Unit 3	SF4 1001 SF4 1002 F3S 1003 MPD 2001 MPD 2004 MPD 2007
Unit 4	FNE 1004 MG 1005 CMO 1006 MPD 2006 MPD 2010 MPD 2011 MPD 2012