1U8F - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF HUMAN PLACENTAL GLYCERALDEHYDE-3- PHOSPHATE DEHYDROGENASE AT 1.75 RESOLUTION
• Keywords: GAPDH, ROSSMANN FOLD, OXIDOREDUCTASE, DEHYDROGENASE, MAMMALIAN GAPDH, GAPD
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1U8F	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, LIVER	O	333	2523	0
2	Protein	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, LIVER	P	333	2523	0
3	Protein	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, LIVER	Q	333	2523	0
4	Protein	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, LIVER	R	333	2523	0
5	Ligand	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, LIVER	P	1	0	44
6	Ligand	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, LIVER	Q	1	0	44
7	Ligand	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, LIVER	R	1	0	44
8	Water			911	0	911
total				2246	10092	1043

Proteins

Unit 1	LYS 3 VAL 4 LYS 5 VAL 6 GLY 7 VAL 8 ASN 9 GLY 10 PHE 11 GLY 12 ARG 13 ILE 14 GLY 15 ARG 16 LEU 17 VAL 18 THR 19 ARG 20 ALA 21 ALA 22 PHE 23 ASN 24 SER 25 GLY 26 LYS 27 VAL 28 ASP 29 ILE 30 VAL 31 ALA 32 ILE 33 ASN 34 ASP 35 PRO 36 PHE 37 ILE 38 ASP 39 LEU 40 ASN 41 TYR 42 MET 43 VAL 44 TYR 45 MET 46 PHE 47 GLN 48 TYR 49 ASP 50 SER 51 THR 52 HIS 53 GLY 54 LYS 55 PHE 56 HIS 57 GLY 58 THR 59 VAL 60 LYS 61 ALA 62 GLU 63 ASN 64 GLY 65 LYS 66 LEU 67 VAL 68 ILE 69 ASN 70 GLY 71 ASN 72 PRO 73 ILE 74 THR 75 ILE 76 PHE 77 GLN 78 GLU 79 ARG 80 ASP 81 PRO 82 SER 83 LYS 84 ILE 85 LYS 86 TRP 87 GLY 88 ASP 89 ALA 90 GLY 91 ALA 92 GLU 93 TYR 94 VAL 95 VAL 96 GLU 97 SER 98 THR 99 GLY 100 VAL 101 PHE 102 THR 103 THR 104 MET 105 GLU 106 LYS 107 ALA 108 GLY 109 ALA 110 HIS 111 LEU 112 GLN 113 GLY 114 GLY 115 ALA 116 LYS 117 ARG 118 VAL 119 ILE 120 ILE 121 SER 122 ALA 123 PRO 124 SER 125 ALA 126 ASP 127 ALA 128 PRO 129 MET 130 PHE 131 VAL 132 MET 133 GLY 134 VAL 135 ASN 136 HIS 137 GLU 138 LYS 139 TYR 140 ASP 141 ASN 142 SER 143 LEU 144 LYS 145 ILE 146 ILE 147 SER 148 ASN 149 ALA 150 SER 151 CYS 152 THR 153 THR 154 ASN 155 CYS 156 LEU 157 ALA 158 PRO 159 LEU 160 ALA 161 LYS 162 VAL 163 ILE 164 HIS 165 ASP 166 ASN 167 PHE 168 GLY 169 ILE 170 VAL 171 GLU 172 GLY 173 LEU 174 MET 175 THR 176 THR 177 VAL 178 HIS 179 ALA 180 ILE 181 THR 182 ALA 183 THR 184 GLN 185 LYS 186 THR 187 VAL 188 ASP 189 GLY 190 PRO 191 SER 192 GLY 193 LYS 194 LEU 195 TRP 196 ARG 197 ASP 198 GLY 199 ARG 200 GLY 201 ALA 202 LEU 203 GLN 204 ASN 205 ILE 206 ILE 207 PRO 208 ALA 209 SER 210 THR 211 GLY 212 ALA 213 ALA 214 LYS 215 ALA 216 VAL 217 GLY 218 LYS 219 VAL 220 ILE 221 PRO 222 GLU 223 LEU 224 ASN 225 GLY 226 LYS 227 LEU 228 THR 229 GLY 230 MET 231 ALA 232 PHE 233 ARG 234 VAL 235 PRO 236 THR 237 ALA 238 ASN 239 VAL 240 SER 241 VAL 242 VAL 243 ASP 244 LEU 245 THR 246 CYS 247 ARG 248 LEU 249 GLU 250 LYS 251 PRO 252 ALA 253 LYS 254 TYR 255 ASP 256 ASP 257 ILE 258 LYS 259 LYS 260 VAL 261 VAL 262 LYS 263 GLN 264 ALA 265 SER 266 GLU 267 GLY 268 PRO 269 LEU 270 LYS 271 GLY 272 ILE 273 LEU 274 GLY 275 TYR 276 THR 277 GLU 278 HIS 279 GLN 280 VAL 281 VAL 282 SER 283 SER 284 ASP 285 PHE 286 ASN 287 SER 288 ASP 289 THR 290 HIS 291 SER 292 SER 293 THR 294 PHE 295 ASP 296 ALA 297 GLY 298 ALA 299 GLY 300 ILE 301 ALA 302 LEU 303 ASN 304 ASP 305 HIS 306 PHE 307 VAL 308 LYS 309 LEU 310 ILE 311 SER 312 TRP 313 TYR 314 ASP 315 ASN 316 GLU 317 PHE 318 GLY 319 TYR 320 SER 321 ASN 322 ARG 323 VAL 324 VAL 325 ASP 326 LEU 327 MET 328 ALA 329 HIS 330 MET 331 ALA 332 SER 333 LYS 334 GLU 335
Unit 2	LYS 3 VAL 4 LYS 5 VAL 6 GLY 7 VAL 8 ASN 9 GLY 10 PHE 11 GLY 12 ARG 13 ILE 14 GLY 15 ARG 16 LEU 17 VAL 18 THR 19 ARG 20 ALA 21 ALA 22 PHE 23 ASN 24 SER 25 GLY 26 LYS 27 VAL 28 ASP 29 ILE 30 VAL 31 ALA 32 ILE 33 ASN 34 ASP 35 PRO 36 PHE 37 ILE 38 ASP 39 LEU 40 ASN 41 TYR 42 MET 43 VAL 44 TYR 45 MET 46 PHE 47 GLN 48 TYR 49 ASP 50 SER 51 THR 52 HIS 53 GLY 54 LYS 55 PHE 56 HIS 57 GLY 58 THR 59 VAL 60 LYS 61 ALA 62 GLU 63 ASN 64 GLY 65 LYS 66 LEU 67 VAL 68 ILE 69 ASN 70 GLY 71 ASN 72 PRO 73 ILE 74 THR 75 ILE 76 PHE 77 GLN 78 GLU 79 ARG 80 ASP 81 PRO 82 SER 83 LYS 84 ILE 85 LYS 86 TRP 87 GLY 88 ASP 89 ALA 90 GLY 91 ALA 92 GLU 93 TYR 94 VAL 95 VAL 96 GLU 97 SER 98 THR 99 GLY 100 VAL 101 PHE 102 THR 103 THR 104 MET 105 GLU 106 LYS 107 ALA 108 GLY 109 ALA 110 HIS 111 LEU 112 GLN 113 GLY 114 GLY 115 ALA 116 LYS 117 ARG 118 VAL 119 ILE 120 ILE 121 SER 122 ALA 123 PRO 124 SER 125 ALA 126 ASP 127 ALA 128 PRO 129 MET 130 PHE 131 VAL 132 MET 133 GLY 134 VAL 135 ASN 136 HIS 137 GLU 138 LYS 139 TYR 140 ASP 141 ASN 142 SER 143 LEU 144 LYS 145 ILE 146 ILE 147 SER 148 ASN 149 ALA 150 SER 151 CYS 152 THR 153 THR 154 ASN 155 CYS 156 LEU 157 ALA 158 PRO 159 LEU 160 ALA 161 LYS 162 VAL 163 ILE 164 HIS 165 ASP 166 ASN 167 PHE 168 GLY 169 ILE 170 VAL 171 GLU 172 GLY 173 LEU 174 MET 175 THR 176 THR 177 VAL 178 HIS 179 ALA 180 ILE 181 THR 182 ALA 183 THR 184 GLN 185 LYS 186 THR 187 VAL 188 ASP 189 GLY 190 PRO 191 SER 192 GLY 193 LYS 194 LEU 195 TRP 196 ARG 197 ASP 198 GLY 199 ARG 200 GLY 201 ALA 202 LEU 203 GLN 204 ASN 205 ILE 206 ILE 207 PRO 208 ALA 209 SER 210 THR 211 GLY 212 ALA 213 ALA 214 LYS 215 ALA 216 VAL 217 GLY 218 LYS 219 VAL 220 ILE 221 PRO 222 GLU 223 LEU 224 ASN 225 GLY 226 LYS 227 LEU 228 THR 229 GLY 230 MET 231 ALA 232 PHE 233 ARG 234 VAL 235 PRO 236 THR 237 ALA 238 ASN 239 VAL 240 SER 241 VAL 242 VAL 243 ASP 244 LEU 245 THR 246 CYS 247 ARG 248 LEU 249 GLU 250 LYS 251 PRO 252 ALA 253 LYS 254 TYR 255 ASP 256 ASP 257 ILE 258 LYS 259 LYS 260 VAL 261 VAL 262 LYS 263 GLN 264 ALA 265 SER 266 GLU 267 GLY 268 PRO 269 LEU 270 LYS 271 GLY 272 ILE 273 LEU 274 GLY 275 TYR 276 THR 277 GLU 278 HIS 279 GLN 280 VAL 281 VAL 282 SER 283 SER 284 ASP 285 PHE 286 ASN 287 SER 288 ASP 289 THR 290 HIS 291 SER 292 SER 293 THR 294 PHE 295 ASP 296 ALA 297 GLY 298 ALA 299 GLY 300 ILE 301 ALA 302 LEU 303 ASN 304 ASP 305 HIS 306 PHE 307 VAL 308 LYS 309 LEU 310 ILE 311 SER 312 TRP 313 TYR 314 ASP 315 ASN 316 GLU 317 PHE 318 GLY 319 TYR 320 SER 321 ASN 322 ARG 323 VAL 324 VAL 325 ASP 326 LEU 327 MET 328 ALA 329 HIS 330 MET 331 ALA 332 SER 333 LYS 334 GLU 335
Unit 3	LYS 3 VAL 4 LYS 5 VAL 6 GLY 7 VAL 8 ASN 9 GLY 10 PHE 11 GLY 12 ARG 13 ILE 14 GLY 15 ARG 16 LEU 17 VAL 18 THR 19 ARG 20 ALA 21 ALA 22 PHE 23 ASN 24 SER 25 GLY 26 LYS 27 VAL 28 ASP 29 ILE 30 VAL 31 ALA 32 ILE 33 ASN 34 ASP 35 PRO 36 PHE 37 ILE 38 ASP 39 LEU 40 ASN 41 TYR 42 MET 43 VAL 44 TYR 45 MET 46 PHE 47 GLN 48 TYR 49 ASP 50 SER 51 THR 52 HIS 53 GLY 54 LYS 55 PHE 56 HIS 57 GLY 58 THR 59 VAL 60 LYS 61 ALA 62 GLU 63 ASN 64 GLY 65 LYS 66 LEU 67 VAL 68 ILE 69 ASN 70 GLY 71 ASN 72 PRO 73 ILE 74 THR 75 ILE 76 PHE 77 GLN 78 GLU 79 ARG 80 ASP 81 PRO 82 SER 83 LYS 84 ILE 85 LYS 86 TRP 87 GLY 88 ASP 89 ALA 90 GLY 91 ALA 92 GLU 93 TYR 94 VAL 95 VAL 96 GLU 97 SER 98 THR 99 GLY 100 VAL 101 PHE 102 THR 103 THR 104 MET 105 GLU 106 LYS 107 ALA 108 GLY 109 ALA 110 HIS 111 LEU 112 GLN 113 GLY 114 GLY 115 ALA 116 LYS 117 ARG 118 VAL 119 ILE 120 ILE 121 SER 122 ALA 123 PRO 124 SER 125 ALA 126 ASP 127 ALA 128 PRO 129 MET 130 PHE 131 VAL 132 MET 133 GLY 134 VAL 135 ASN 136 HIS 137 GLU 138 LYS 139 TYR 140 ASP 141 ASN 142 SER 143 LEU 144 LYS 145 ILE 146 ILE 147 SER 148 ASN 149 ALA 150 SER 151 CYS 152 THR 153 THR 154 ASN 155 CYS 156 LEU 157 ALA 158 PRO 159 LEU 160 ALA 161 LYS 162 VAL 163 ILE 164 HIS 165 ASP 166 ASN 167 PHE 168 GLY 169 ILE 170 VAL 171 GLU 172 GLY 173 LEU 174 MET 175 THR 176 THR 177 VAL 178 HIS 179 ALA 180 ILE 181 THR 182 ALA 183 THR 184 GLN 185 LYS 186 THR 187 VAL 188 ASP 189 GLY 190 PRO 191 SER 192 GLY 193 LYS 194 LEU 195 TRP 196 ARG 197 ASP 198 GLY 199 ARG 200 GLY 201 ALA 202 LEU 203 GLN 204 ASN 205 ILE 206 ILE 207 PRO 208 ALA 209 SER 210 THR 211 GLY 212 ALA 213 ALA 214 LYS 215 ALA 216 VAL 217 GLY 218 LYS 219 VAL 220 ILE 221 PRO 222 GLU 223 LEU 224 ASN 225 GLY 226 LYS 227 LEU 228 THR 229 GLY 230 MET 231 ALA 232 PHE 233 ARG 234 VAL 235 PRO 236 THR 237 ALA 238 ASN 239 VAL 240 SER 241 VAL 242 VAL 243 ASP 244 LEU 245 THR 246 CYS 247 ARG 248 LEU 249 GLU 250 LYS 251 PRO 252 ALA 253 LYS 254 TYR 255 ASP 256 ASP 257 ILE 258 LYS 259 LYS 260 VAL 261 VAL 262 LYS 263 GLN 264 ALA 265 SER 266 GLU 267 GLY 268 PRO 269 LEU 270 LYS 271 GLY 272 ILE 273 LEU 274 GLY 275 TYR 276 THR 277 GLU 278 HIS 279 GLN 280 VAL 281 VAL 282 SER 283 SER 284 ASP 285 PHE 286 ASN 287 SER 288 ASP 289 THR 290 HIS 291 SER 292 SER 293 THR 294 PHE 295 ASP 296 ALA 297 GLY 298 ALA 299 GLY 300 ILE 301 ALA 302 LEU 303 ASN 304 ASP 305 HIS 306 PHE 307 VAL 308 LYS 309 LEU 310 ILE 311 SER 312 TRP 313 TYR 314 ASP 315 ASN 316 GLU 317 PHE 318 GLY 319 TYR 320 SER 321 ASN 322 ARG 323 VAL 324 VAL 325 ASP 326 LEU 327 MET 328 ALA 329 HIS 330 MET 331 ALA 332 SER 333 LYS 334 GLU 335
Unit 4	LYS 3 VAL 4 LYS 5 VAL 6 GLY 7 VAL 8 ASN 9 GLY 10 PHE 11 GLY 12 ARG 13 ILE 14 GLY 15 ARG 16 LEU 17 VAL 18 THR 19 ARG 20 ALA 21 ALA 22 PHE 23 ASN 24 SER 25 GLY 26 LYS 27 VAL 28 ASP 29 ILE 30 VAL 31 ALA 32 ILE 33 ASN 34 ASP 35 PRO 36 PHE 37 ILE 38 ASP 39 LEU 40 ASN 41 TYR 42 MET 43 VAL 44 TYR 45 MET 46 PHE 47 GLN 48 TYR 49 ASP 50 SER 51 THR 52 HIS 53 GLY 54 LYS 55 PHE 56 HIS 57 GLY 58 THR 59 VAL 60 LYS 61 ALA 62 GLU 63 ASN 64 GLY 65 LYS 66 LEU 67 VAL 68 ILE 69 ASN 70 GLY 71 ASN 72 PRO 73 ILE 74 THR 75 ILE 76 PHE 77 GLN 78 GLU 79 ARG 80 ASP 81 PRO 82 SER 83 LYS 84 ILE 85 LYS 86 TRP 87 GLY 88 ASP 89 ALA 90 GLY 91 ALA 92 GLU 93 TYR 94 VAL 95 VAL 96 GLU 97 SER 98 THR 99 GLY 100 VAL 101 PHE 102 THR 103 THR 104 MET 105 GLU 106 LYS 107 ALA 108 GLY 109 ALA 110 HIS 111 LEU 112 GLN 113 GLY 114 GLY 115 ALA 116 LYS 117 ARG 118 VAL 119 ILE 120 ILE 121 SER 122 ALA 123 PRO 124 SER 125 ALA 126 ASP 127 ALA 128 PRO 129 MET 130 PHE 131 VAL 132 MET 133 GLY 134 VAL 135 ASN 136 HIS 137 GLU 138 LYS 139 TYR 140 ASP 141 ASN 142 SER 143 LEU 144 LYS 145 ILE 146 ILE 147 SER 148 ASN 149 ALA 150 SER 151 CYS 152 THR 153 THR 154 ASN 155 CYS 156 LEU 157 ALA 158 PRO 159 LEU 160 ALA 161 LYS 162 VAL 163 ILE 164 HIS 165 ASP 166 ASN 167 PHE 168 GLY 169 ILE 170 VAL 171 GLU 172 GLY 173 LEU 174 MET 175 THR 176 THR 177 VAL 178 HIS 179 ALA 180 ILE 181 THR 182 ALA 183 THR 184 GLN 185 LYS 186 THR 187 VAL 188 ASP 189 GLY 190 PRO 191 SER 192 GLY 193 LYS 194 LEU 195 TRP 196 ARG 197 ASP 198 GLY 199 ARG 200 GLY 201 ALA 202 LEU 203 GLN 204 ASN 205 ILE 206 ILE 207 PRO 208 ALA 209 SER 210 THR 211 GLY 212 ALA 213 ALA 214 LYS 215 ALA 216 VAL 217 GLY 218 LYS 219 VAL 220 ILE 221 PRO 222 GLU 223 LEU 224 ASN 225 GLY 226 LYS 227 LEU 228 THR 229 GLY 230 MET 231 ALA 232 PHE 233 ARG 234 VAL 235 PRO 236 THR 237 ALA 238 ASN 239 VAL 240 SER 241 VAL 242 VAL 243 ASP 244 LEU 245 THR 246 CYS 247 ARG 248 LEU 249 GLU 250 LYS 251 PRO 252 ALA 253 LYS 254 TYR 255 ASP 256 ASP 257 ILE 258 LYS 259 LYS 260 VAL 261 VAL 262 LYS 263 GLN 264 ALA 265 SER 266 GLU 267 GLY 268 PRO 269 LEU 270 LYS 271 GLY 272 ILE 273 LEU 274 GLY 275 TYR 276 THR 277 GLU 278 HIS 279 GLN 280 VAL 281 VAL 282 SER 283 SER 284 ASP 285 PHE 286 ASN 287 SER 288 ASP 289 THR 290 HIS 291 SER 292 SER 293 THR 294 PHE 295 ASP 296 ALA 297 GLY 298 ALA 299 GLY 300 ILE 301 ALA 302 LEU 303 ASN 304 ASP 305 HIS 306 PHE 307 VAL 308 LYS 309 LEU 310 ILE 311 SER 312 TRP 313 TYR 314 ASP 315 ASN 316 GLU 317 PHE 318 GLY 319 TYR 320 SER 321 ASN 322 ARG 323 VAL 324 VAL 325 ASP 326 LEU 327 MET 328 ALA 329 HIS 330 MET 331 ALA 332 SER 333 LYS 334 GLU 335

Ligands

Unit 5	NAD 336
Unit 6	NAD 336
Unit 7	NAD 336