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Sequence, Chains, Asymmetric and Biological Units

Title NMR STRUCTURE OF THE MLV ENCAPSIDATION SIGNAL BOUND TO THE NUCLEOCAPSID PROTEIN
Keywords MLV, A-MINOR K-TURN, STEM LOOP, BULGE, G-U MISMATCH, G-A MIS U MISMATCH, A-C MISMATCH, ZINC FINGER, NC, VIRAL PROTEIN-RN
Experiment NMR
Number of Models  20


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1U6P     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GAG POLYPROTEIN  A 56 888 0
2  RNA    B 101 3225 34
3  Ligand   GAG POLYPROTEIN  A 1 0 1
total       158 4113 35

Proteins
Unit 1 ALA1 THR2 VAL3 VAL4 SER5 GLY6 GLN7 LYS8 GLN9 ASP10 ARG11 GLN12 GLY13 GLY14 GLU15 ARG16 ARG17 ARG18 SER19 GLN20 LEU21 ASP22 ARG23 ASP24 GLN25 CYS26 ALA27 TYR28 CYS29 LYS30 GLU31 LYS32 GLY33 HIS34 TRP35 ALA36 LYS37 ASP38 CYS39 PRO40 LYS41 LYS42 PRO43 ARG44 GLY45 PRO46 ARG47 GLY48 PRO49 ARG50 PRO51 GLN52 THR53 SER54 LEU55 LEU56

Nucleic acids
Unit 2 G276 G277 C278 G279 G280 U281 AP7282 C283 U284 A285 G286 U287 U288 G289 A290 G291 A292 A293 A294 C295 U296 A297 G298 C299 U300 C301 U302 G303 U304 A305 U306 C307 U308 G309 G310 C311 G312 G313 A314 C315 C316 C317 G318 U319 G320 G321 U322 G323 G324 A325 A326 C327 U328 G329 U330 G331 A332 A333 G334 U335 U336 C337 G338 G339 A340 A341 C342 A343 C344 C345 C346 G347 G348 C349 C350 G351 C352 A353 A354 C355 C356 C357 U358 G359 G360 G361 A362 G363 A364 G365 G366 U367 C368 C369 C370 A371 G372 G373 G374 U375 U376

Ligands
Unit 3 ZN57

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany