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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF RAB5 COMPLEX WITH RABAPTIN5 C-TERMINAL DOMAIN
Keywords RAB5, RABAPTIN5, EFFECTOR-BINDING, PROTEIN TRANSPORT
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1TU3     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RAS-RELATED PROTEIN RAB-5A  A 165 1296 0
2  Protein   RAS-RELATED PROTEIN RAB-5A  B 166 1305 0
3  Protein   RAS-RELATED PROTEIN RAB-5A  C 166 1305 0
4  Protein   RAS-RELATED PROTEIN RAB-5A  D 147 1141 0
5  Protein   RAS-RELATED PROTEIN RAB-5A  E 167 1313 0
6  Protein   RAB GTPASE BINDING EFFECTOR PROTEIN 1  F 46 381 0
7  Protein   RAB GTPASE BINDING EFFECTOR PROTEIN 1  G 51 422 0
8  Protein   RAB GTPASE BINDING EFFECTOR PROTEIN 1  H 44 367 0
9  Protein   RAB GTPASE BINDING EFFECTOR PROTEIN 1  I 45 375 0
10  Protein   RAB GTPASE BINDING EFFECTOR PROTEIN 1  J 53 437 0
11  Ligand   RAS-RELATED PROTEIN RAB-5A  A 2 0 33
12  Ligand   RAS-RELATED PROTEIN RAB-5A  B 2 0 33
13  Ligand   RAS-RELATED PROTEIN RAB-5A  C 2 0 33
14  Ligand   RAS-RELATED PROTEIN RAB-5A  D 2 0 33
15  Ligand   RAS-RELATED PROTEIN RAB-5A  E 2 0 33
16 Water     228 0 228
total       1288 8342 393

Proteins
Unit 1 ILE18 CYS19 GLN20 PHE21 LYS22 LEU23 VAL24 LEU25 LEU26 GLY27 GLU28 SER29 ALA30 VAL31 GLY32 LYS33 SER34 SER35 LEU36 VAL37 LEU38 ARG39 PHE40 VAL41 LYS42 GLY43 GLN44 PHE45 HIS46 GLU47 PHE48 GLN49 GLU50 SER51 THR52 ILE53 GLY54 ALA55 ALA56 PHE57 LEU58 THR59 GLN60 THR61 VAL62 CYS63 LEU64 ASP65 ASP66 THR67 THR68 VAL69 LYS70 PHE71 GLU72 ILE73 TRP74 ASP75 THR76 ALA77 GLY78 GLN79 GLU80 ARG81 TYR82 HIS83 SER84 LEU85 ALA86 PRO87 MET88 TYR89 TYR90 ARG91 GLY92 ALA93 GLN94 ALA95 ALA96 ILE97 VAL98 VAL99 TYR100 ASP101 ILE102 THR103 ASN104 GLU105 GLU106 SER107 PHE108 ALA109 ARG110 ALA111 LYS112 ASN113 TRP114 VAL115 LYS116 GLU117 LEU118 GLN119 ARG120 GLN121 ALA122 SER123 PRO124 ASN125 ILE126 VAL127 ILE128 ALA129 LEU130 SER131 GLY132 ASN133 LYS134 ALA135 ASP136 LEU137 ALA138 ASN139 LYS140 ARG141 ALA142 VAL143 ASP144 PHE145 GLN146 GLU147 ALA148 GLN149 SER150 TYR151 ALA152 ASP153 ASP154 ASN155 SER156 LEU157 LEU158 PHE159 MET160 GLU161 THR162 SER163 ALA164 LYS165 THR166 SER167 MET168 ASN169 VAL170 ASN171 GLU172 ILE173 PHE174 MET175 ALA176 ILE177 ALA178 LYS179 LYS180 LEU181 PRO182
Unit 2 LYS17 ILE18 CYS19 GLN20 PHE21 LYS22 LEU23 VAL24 LEU25 LEU26 GLY27 GLU28 SER29 ALA30 VAL31 GLY32 LYS33 SER34 SER35 LEU36 VAL37 LEU38 ARG39 PHE40 VAL41 LYS42 GLY43 GLN44 PHE45 HIS46 GLU47 PHE48 GLN49 GLU50 SER51 THR52 ILE53 GLY54 ALA55 ALA56 PHE57 LEU58 THR59 GLN60 THR61 VAL62 CYS63 LEU64 ASP65 ASP66 THR67 THR68 VAL69 LYS70 PHE71 GLU72 ILE73 TRP74 ASP75 THR76 ALA77 GLY78 GLN79 GLU80 ARG81 TYR82 HIS83 SER84 LEU85 ALA86 PRO87 MET88 TYR89 TYR90 ARG91 GLY92 ALA93 GLN94 ALA95 ALA96 ILE97 VAL98 VAL99 TYR100 ASP101 ILE102 THR103 ASN104 GLU105 GLU106 SER107 PHE108 ALA109 ARG110 ALA111 LYS112 ASN113 TRP114 VAL115 LYS116 GLU117 LEU118 GLN119 ARG120 GLN121 ALA122 SER123 PRO124 ASN125 ILE126 VAL127 ILE128 ALA129 LEU130 SER131 GLY132 ASN133 LYS134 ALA135 ASP136 LEU137 ALA138 ASN139 LYS140 ARG141 ALA142 VAL143 ASP144 PHE145 GLN146 GLU147 ALA148 GLN149 SER150 TYR151 ALA152 ASP153 ASP154 ASN155 SER156 LEU157 LEU158 PHE159 MET160 GLU161 THR162 SER163 ALA164 LYS165 THR166 SER167 MET168 ASN169 VAL170 ASN171 GLU172 ILE173 PHE174 MET175 ALA176 ILE177 ALA178 LYS179 LYS180 LEU181 PRO182
Unit 3 CYS19 GLN20 PHE21 LYS22 LEU23 VAL24 LEU25 LEU26 GLY27 GLU28 SER29 ALA30 VAL31 GLY32 LYS33 SER34 SER35 LEU36 VAL37 LEU38 ARG39 PHE40 VAL41 LYS42 GLY43 GLN44 PHE45 HIS46 GLU47 PHE48 GLN49 GLU50 SER51 THR52 ILE53 GLY54 ALA55 ALA56 PHE57 LEU58 THR59 GLN60 THR61 VAL62 CYS63 LEU64 ASP65 ASP66 THR67 THR68 VAL69 LYS70 PHE71 GLU72 ILE73 TRP74 ASP75 THR76 ALA77 GLY78 GLN79 GLU80 ARG81 TYR82 HIS83 SER84 LEU85 ALA86 PRO87 MET88 TYR89 TYR90 ARG91 GLY92 ALA93 GLN94 ALA95 ALA96 ILE97 VAL98 VAL99 TYR100 ASP101 ILE102 THR103 ASN104 GLU105 GLU106 SER107 PHE108 ALA109 ARG110 ALA111 LYS112 ASN113 TRP114 VAL115 LYS116 GLU117 LEU118 GLN119 ARG120 GLN121 ALA122 SER123 PRO124 ASN125 ILE126 VAL127 ILE128 ALA129 LEU130 SER131 GLY132 ASN133 LYS134 ALA135 ASP136 LEU137 ALA138 ASN139 LYS140 ARG141 ALA142 VAL143 ASP144 PHE145 GLN146 GLU147 ALA148 GLN149 SER150 TYR151 ALA152 ASP153 ASP154 ASN155 SER156 LEU157 LEU158 PHE159 MET160 GLU161 THR162 SER163 ALA164 LYS165 THR166 SER167 MET168 ASN169 VAL170 ASN171 GLU172 ILE173 PHE174 MET175 ALA176 ILE177 ALA178 LYS179 LYS180 LEU181 PRO182 LYS183 ASN184
Unit 4 LYS22 LEU23 VAL24 LEU25 LEU26 GLY27 GLU28 SER29 ALA30 VAL31 GLY32 LYS33 SER34 SER35 LEU36 VAL37 LEU38 ARG39 PHE40 VAL41 LYS42 GLY43 GLN44 PHE45 GLN49 GLU50 SER51 THR52 ILE53 GLY54 ALA55 ALA56 PHE57 LEU58 THR59 GLN60 THR61 VAL62 CYS63 ASP66 THR67 THR68 VAL69 GLU72 ILE73 TRP74 ASP75 THR76 ALA77 GLY78 GLN79 GLU80 ARG81 TYR82 HIS83 SER84 LEU85 ALA86 PRO87 MET88 TYR89 TYR90 ARG91 GLY92 ALA93 GLN94 ALA95 ALA96 ILE97 VAL98 VAL99 TYR100 ASP101 ILE102 THR103 ASN104 GLU105 GLU106 SER107 PHE108 ALA109 ARG110 ALA111 LYS112 ASN113 TRP114 VAL115 LYS116 GLU117 LEU118 ILE126 VAL127 ILE128 ALA129 LEU130 SER131 GLY132 ASN133 LYS134 ALA135 ASP136 LEU137 ALA138 ASN139 LYS140 ARG141 ALA142 VAL143 ASP144 PHE145 GLN146 GLU147 ALA148 GLN149 SER150 TYR151 ALA152 ASP153 ASP154 ASN155 SER156 LEU157 LEU158 PHE159 MET160 GLU161 THR162 SER163 ALA164 LYS165 THR166 SER167 MET168 ASN169 VAL170 ASN171 GLU172 ILE173 PHE174 MET175 ALA176 ILE177 ALA178 LYS179 LYS180 LEU181 PRO182
Unit 5 ASN16 LYS17 ILE18 CYS19 GLN20 PHE21 LYS22 LEU23 VAL24 LEU25 LEU26 GLY27 GLU28 SER29 ALA30 VAL31 GLY32 LYS33 SER34 SER35 LEU36 VAL37 LEU38 ARG39 PHE40 VAL41 LYS42 GLY43 GLN44 PHE45 HIS46 GLU47 PHE48 GLN49 GLU50 SER51 THR52 ILE53 GLY54 ALA55 ALA56 PHE57 LEU58 THR59 GLN60 THR61 VAL62 CYS63 LEU64 ASP65 ASP66 THR67 THR68 VAL69 LYS70 PHE71 GLU72 ILE73 TRP74 ASP75 THR76 ALA77 GLY78 GLN79 GLU80 ARG81 TYR82 HIS83 SER84 LEU85 ALA86 PRO87 MET88 TYR89 TYR90 ARG91 GLY92 ALA93 GLN94 ALA95 ALA96 ILE97 VAL98 VAL99 TYR100 ASP101 ILE102 THR103 ASN104 GLU105 GLU106 SER107 PHE108 ALA109 ARG110 ALA111 LYS112 ASN113 TRP114 VAL115 LYS116 GLU117 LEU118 GLN119 ARG120 GLN121 ALA122 SER123 PRO124 ASN125 ILE126 VAL127 ILE128 ALA129 LEU130 SER131 GLY132 ASN133 LYS134 ALA135 ASP136 LEU137 ALA138 ASN139 LYS140 ARG141 ALA142 VAL143 ASP144 PHE145 GLN146 GLU147 ALA148 GLN149 SER150 TYR151 ALA152 ASP153 ASP154 ASN155 SER156 LEU157 LEU158 PHE159 MET160 GLU161 THR162 SER163 ALA164 LYS165 THR166 SER167 MET168 ASN169 VAL170 ASN171 GLU172 ILE173 PHE174 MET175 ALA176 ILE177 ALA178 LYS179 LYS180 LEU181 PRO182
Unit 6 ALA804 GLN805 ARG806 LEU807 GLN808 THR809 GLU810 LEU811 ASP812 VAL813 SER814 GLU815 GLN816 VAL817 GLN818 ARG819 ASP820 PHE821 VAL822 LYS823 LEU824 SER825 GLN826 THR827 LEU828 GLN829 VAL830 GLN831 LEU832 GLU833 ARG834 ILE835 ARG836 GLN837 ALA838 ASP839 SER840 LEU841 GLU842 ARG843 ILE844 ARG845 ALA846 ILE847 LEU848 ASN849
Unit 7 ASN802 LYS803 ALA804 GLN805 ARG806 LEU807 GLN808 THR809 GLU810 LEU811 ASP812 VAL813 SER814 GLU815 GLN816 VAL817 GLN818 ARG819 ASP820 PHE821 VAL822 LYS823 LEU824 SER825 GLN826 THR827 LEU828 GLN829 VAL830 GLN831 LEU832 GLU833 ARG834 ILE835 ARG836 GLN837 ALA838 ASP839 SER840 LEU841 GLU842 ARG843 ILE844 ARG845 ALA846 ILE847 LEU848 ASN849 ASP850 THR851 LYS852
Unit 8 ARG806 LEU807 GLN808 THR809 GLU810 LEU811 ASP812 VAL813 SER814 GLU815 GLN816 VAL817 GLN818 ARG819 ASP820 PHE821 VAL822 LYS823 LEU824 SER825 GLN826 THR827 LEU828 GLN829 VAL830 GLN831 LEU832 GLU833 ARG834 ILE835 ARG836 GLN837 ALA838 ASP839 SER840 LEU841 GLU842 ARG843 ILE844 ARG845 ALA846 ILE847 LEU848 ASN849
Unit 9 ALA804 GLN805 ARG806 LEU807 GLN808 THR809 GLU810 LEU811 ASP812 VAL813 SER814 GLU815 GLN816 VAL817 GLN818 ARG819 ASP820 PHE821 VAL822 LYS823 LEU824 SER825 GLN826 THR827 LEU828 GLN829 VAL830 GLN831 LEU832 GLU833 ARG834 ILE835 ARG836 GLN837 ALA838 LEU841 GLU842 ARG843 ILE844 ARG845 ALA846 ILE847 LEU848 ASN849 ASP850
Unit 10 ASN802 LYS803 ALA804 GLN805 ARG806 LEU807 GLN808 THR809 GLU810 LEU811 ASP812 VAL813 SER814 GLU815 GLN816 VAL817 GLN818 ARG819 ASP820 PHE821 VAL822 LYS823 LEU824 SER825 GLN826 THR827 LEU828 GLN829 VAL830 GLN831 LEU832 GLU833 ARG834 ILE835 ARG836 GLN837 ALA838 ASP839 SER840 LEU841 GLU842 ARG843 ILE844 ARG845 ALA846 ILE847 LEU848 ASN849 ASP850 THR851 LYS852 LEU853 THR854

Ligands
Unit 11 MG1201 GNP1202
Unit 12 MG2201 GNP2202
Unit 13 MG3201 GNP3202
Unit 14 MG4201 GNP4202
Unit 15 MG5201 GNP5202

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany