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Sequence, Chains, Asymmetric and Biological Units

Title HUMAN DNA TOPOISOMERASE I (70 KDA) IN COMPLEX WITH THE INDENOISOQUINOLINE AI-III-52 AND COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX
Keywords COMPLEX (ISOMERASE/DNA), DNA, TOPOISOMERASE I, DRUG, POISON, IDENOISOQUINOLINE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1TL8     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Other macromolecule   5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*T)-3'  B 10 203 0
2  Other macromolecule   5'-D(*(TPC)P*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3'  C 12 227 16
3  Other macromolecule   5'- D(*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*GP*TP*CP*TP*TP *TP*TP*T)-3'  D 22 446 0
4  Protein   DNA TOPOISOMERASE I  A 565 4687 16
5  Ligand   5'- D(*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*GP*TP*CP*TP*TP *TP*TP*T)-3'  D 1 0 24
total       610 5563 56
Proteins
Unit 4 GLN201 LYS202 TRP203 LYS204 TRP205 TRP206 GLU207 GLU208 GLU209 ARG210 TYR211 PRO212 GLU213 GLY214 ILE215 LYS216 TRP217 LYS218 PHE219 LEU220 GLU221 HIS222 LYS223 GLY224 PRO225 VAL226 PHE227 ALA228 PRO229 PRO230 TYR231 GLU232 PRO233 LEU234 PRO235 GLU236 ASN237 VAL238 LYS239 PHE240 TYR241 TYR242 ASP243 GLY244 LYS245 VAL246 MET247 LYS248 LEU249 SER250 PRO251 LYS252 ALA253 GLU254 GLU255 VAL256 ALA257 THR258 PHE259 PHE260 ALA261 LYS262 MET263 LEU264 ASP265 HIS266 GLU267 TYR268 THR269 THR270 LYS271 GLU272 ILE273 PHE274 ARG275 LYS276 ASN277 PHE278 PHE279 LYS280 ASP281 TRP282 ARG283 LYS284 GLU285 MET286 THR287 ASN288 GLU289 GLU290 LYS291 ASN292 ILE293 ILE294 THR295 ASN296 LEU297 SER298 LYS299 CYS300 ASP301 PHE302 THR303 GLN304 MET305 SER306 GLN307 TYR308 PHE309 LYS310 ALA311 GLN312 THR313 GLU314 ALA315 ARG316 LYS317 GLN318 MET319 SER320 LYS321 GLU322 GLU323 LYS324 LEU325 LYS326 ILE327 LYS328 GLU329 GLU330 ASN331 GLU332 LYS333 LEU334 LEU335 LYS336 GLU337 TYR338 GLY339 PHE340 CYS341 ILE342 MET343 ASP344 ASN345 HIS346 LYS347 GLU348 ARG349 ILE350 ALA351 ASN352 PHE353 LYS354 ILE355 GLU356 PRO357 PRO358 GLY359 LEU360 PHE361 ARG362 GLY363 ARG364 GLY365 ASN366 HIS367 PRO368 LYS369 MET370 GLY371 MET372 LEU373 LYS374 ARG375 ARG376 ILE377 MET378 PRO379 GLU380 ASP381 ILE382 ILE383 ILE384 ASN385 CYS386 SER387 LYS388 ASP389 ALA390 LYS391 VAL392 PRO393 SER394 PRO395 PRO396 PRO397 GLY398 HIS399 LYS400 TRP401 LYS402 GLU403 VAL404 ARG405 HIS406 ASP407 ASN408 LYS409 VAL410 THR411 TRP412 LEU413 VAL414 SER415 TRP416 THR417 GLU418 ASN419 ILE420 GLN421 GLY422 SER423 ILE424 LYS425 TYR426 ILE427 MET428 LEU429 ASN430 PRO431 SER432 SER433 ARG434 ILE435 LYS436 GLY437 GLU438 LYS439 ASP440 TRP441 GLN442 LYS443 TYR444 GLU445 THR446 ALA447 ARG448 ARG449 LEU450 LYS451 LYS452 CYS453 VAL454 ASP455 LYS456 ILE457 ARG458 ASN459 GLN460 TYR461 ARG462 GLU463 ASP464 TRP465 LYS466 SER467 LYS468 GLU469 MET470 LYS471 VAL472 ARG473 GLN474 ARG475 ALA476 VAL477 ALA478 LEU479 TYR480 PHE481 ILE482 ASP483 LYS484 LEU485 ALA486 LEU487 ARG488 ALA489 GLY490 ASN491 GLU492 LYS493 GLU494 GLU495 GLY496 GLU497 THR498 ALA499 ASP500 THR501 VAL502 GLY503 CYS504 CYS505 SER506 LEU507 ARG508 VAL509 GLU510 HIS511 ILE512 ASN513 LEU514 HIS515 PRO516 GLU517 LEU518 ASP519 GLY520 GLN521 GLU522 TYR523 VAL524 VAL525 GLU526 PHE527 ASP528 PHE529 LEU530 GLY531 LYS532 ASP533 SER534 ILE535 ARG536 TYR537 TYR538 ASN539 LYS540 VAL541 PRO542 VAL543 GLU544 LYS545 ARG546 VAL547 PHE548 LYS549 ASN550 LEU551 GLN552 LEU553 PHE554 MET555 GLU556 ASN557 LYS558 GLN559 PRO560 GLU561 ASP562 ASP563 LEU564 PHE565 ASP566 ARG567 LEU568 ASN569 THR570 GLY571 ILE572 LEU573 ASN574 LYS575 HIS576 LEU577 GLN578 ASP579 LEU580 MET581 GLU582 GLY583 LEU584 THR585 ALA586 LYS587 VAL588 PHE589 ARG590 THR591 TYR592 ASN593 ALA594 SER595 ILE596 THR597 LEU598 GLN599 GLN600 GLN601 LEU602 LYS603 GLU604 LEU605 THR606 ALA607 PRO608 ASP609 GLU610 ASN611 ILE612 PRO613 ALA614 LYS615 ILE616 LEU617 SER618 TYR619 ASN620 ARG621 ALA622 ASN623 ARG624 ALA625 VAL626 ALA627 ILE628 LEU629 CYS630 ASN631 HIS632 GLN633 ARG634 ALA635 PRO636 PRO637 LYS638 THR639 PHE640 GLU641 LYS642 SER643 MET644 MET645 ASN646 LEU647 GLN648 THR649 LYS650 ILE651 ASP652 ALA653 LYS654 LYS655 GLU656 GLN657 LEU658 ALA659 ASP660 ALA661 ARG662 ARG663 ASP664 LEU665 LYS666 SER667 ALA668 LYS669 ALA670 ASP671 ALA672 LYS673 VAL674 MET675 LYS676 ASP677 ALA678 LYS679 THR680 LYS681 LYS682 VAL683 VAL684 GLU685 SER686 LYS687 LYS688 LYS689 ALA690 VAL691 GLN692 ARG693 LEU694 GLU695 GLU696 GLN697 LEU698 MET699 LYS700 LEU701 GLU702 VAL703 GLN704 ALA705 THR706 ASP707 ARG708 GLU709 GLU710 ASN711 LYS712 GLN713 ILE714 ALA715 LEU716 GLY717 THR718 SER719 LYS720 LEU721 ASN722 PTR723 LEU724 ASP725 PRO726 ARG727 ILE728 THR729 VAL730 ALA731 TRP732 CYS733 LYS734 LYS735 TRP736 GLY737 VAL738 PRO739 ILE740 GLU741 LYS742 ILE743 TYR744 ASN745 LYS746 THR747 GLN748 ARG749 GLU750 LYS751 PHE752 ALA753 TRP754 ALA755 ILE756 ASP757 MET758 ALA759 ASP760 GLU761 ASP762 TYR763 GLU764 PHE765
Other macromolecules
Unit 1 DA1 DA2 DA3 DA4 DA5 DG6 DA7 DC8 DT9 DT10
Unit 2 TPC11 DG12 DA13 DA14 DA15 DA16 DA17 DT18 DT19 DT20 DT21 DT22
Unit 3 DA101 DA102 DA103 DA104 DA105 DT106 DT107 DT108 DT109 DT110 DC111 DG112 DA113 DA114 DG115 DT116 DC117 DT118 DT119 DT120 DT121 DT122
Ligands
Unit 5 AI3901
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany